As Prime Minister, Bowell faced the difficult Manitoba Schools Question. In 1890 Manitoba stopped giving money to Catholic schools. This was the opposite of an earlier law called in the Manitoba Act of 1870. Bowell other political leaders could not solve the problem. It had divided the country, the government, and even Bowell's own Cabinet. He could not make up his own mind on how to fix the problem. As a Senator he could not speak in the arguments in the House of Commons. Bowell supported a law that would have forced Manitoba to restore funding the Catholic schools. His Cabinet did not agree. Normal government activities stopped. His Cabinet decided he did not have the ability to be Prime Minister and he was forced to resign. Seven government ministers resigned and stopped new people from being appointed. Bowell called them "a nest of traitors". After ten days, the Governor General stepped in and the problem was solved. Six of the ministers went back to their jobs. Charles Tupper was the person who was seen as the real leader. Tupper had been Canadian High Commissioner to the United Kingdom. He had been asked to come back and taker over from Bowell. Bowell resigned at the end of the parliamentary session.