Fujita was born in Fukuoka Prefecture on June 22, 1987. After graduating from Fukuoka University, he joined J2 League club Sagan Tosu in 2010. He played many matches as defensive midfielder from first season. Tosu won the 2nd place in the 2011 season and was promoted to J1 League first time in the club history. In 2016, he moved to Vissel Kobe. In 2019, he moved to Cerezo Osaka.