title: csh cannot be launched
body: <p>After I log into our server with bash, I try to switch to csh, but it was stuck there. I wonder what is happening at csh startup?</p>
  
  <p>I don't have .cshrc file. I'm pretty sure this is related to some settings specific to my account because another user can use csh without problem. I tried to delete my .bash_profile and .bashrc and copied them from the account mentioned above, but they didn't work.</p>
  
  <p>update: Nov 25, 2014 15:31 PM</p>
  
  <p>Thanks for all the comments, especially for mentioning 'csh -X'. First let me clarify a couple of things:</p>
  
  <ol>
  <li>by 'stuck' I mean no shell prompt appears after I type <code>csh</code></li>
  <li>I checked <code>top</code> after <code>csh</code>, csh is in status 'S', so it's not looping infinitely</li>
  <li>`csh` is indeed a symbolic link to `tcsh`</li>
  <li>type 'x' or enter after 'csh' hangs doesn't change the situation</li>
  </ol>
  
  <p>Here's what I got after type <code>csh -X</code>, any clue?</p>
  
  <pre>
  
      [user@cluster ~]$ csh -X
      if ( 547 &gt 199 && `id -gn` == `id -un` ) then
      id -gn
      id -un
      umask 022
      endif
      if ( 1 ) then
      if ( 1 ) then
      set promptchars=$#
      set prompt=[%n@%m %c]%#
      set autolist
      else
      endif
      if ( 1 ) then
      bindkey ^[[3~ delete-char
      endif
      bindkey ^R i-search-back
      set echo_style = both
      set histdup = erase
      set savehist = ( 1024 merge )
      if ( 1 ) then
      if ( 1 ) then
      switch ( xterm )
      if ( 1 ) then
      set prompt=%{\033]0;%n@%m:%c\007%}[%n@%m %c]%#
      endif
      breaksw
      endif
      endif
      setenv MAIL /var/spool/mail/user
      if ( ! 0 ) then
      if ( -d /etc/profile.d ) then
      set nonomatch
      foreach i ( /etc/profile.d/*.csh )
      if ( -r /etc/profile.d/apache-ant.csh ) then
      if ( 1 ) then
      source /etc/profile.d/apache-ant.csh
      setenv ANT_HOME /opt/rocks
      else
      endif
      end
      if ( -r /etc/profile.d/colorls.csh ) then
      if ( 1 ) then
      source /etc/profile.d/colorls.csh
      if ( 0 ) then
      alias ll ls -l
      alias l. ls -d .*
      set COLORS=/etc/DIR_COLORS
      if ( 1 ) then
      if ( -e /etc/DIR_COLORS.xterm ) then
      if ( -e /etc/DIR_COLORS.256color ) then
      if ( `tput colors` == 256 ) then
      tput colors
      endif
      endif
      if ( -f ~/.dircolors ) set COLORS=~/.dircolors
      if ( -f ~/.dir_colors ) set COLORS=~/.dir_colors
      if ( 1 ) then
      if ( -f ~/.dircolors.xterm ) set COLORS=~/.dircolors.xterm
      if ( -f ~/.dir_colors.xterm ) set COLORS=~/.dir_colors.xterm
      endif
      if ( ! -e /etc/DIR_COLORS ) exit
      eval `dircolors -c /etc/DIR_COLORS`
      dircolors -c /etc/DIR_COLORS
      setenv LS_COLORS rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
      if ( rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36: ==  ) exit
      set color_none=`sed -n '/^COLOR.*none/Ip' &lt $COLORS`
      sed -n /^COLOR.*none/Ip
      if (  !=  ) then
      unset color_none
      finish:
      alias ll ls -l --color=auto
      alias l. ls -d .* --color=auto
      alias ls ls --color=auto
      else
      endif
      end
      if ( -r /etc/profile.d/cvs.csh ) then
      if ( 1 ) then
      source /etc/profile.d/cvs.csh
      else
      endif
      end
      if ( -r /etc/profile.d/eclipse.csh ) then
      if ( 1 ) then
      source /etc/profile.d/eclipse.csh
      setenv ECLIPSE_HOME /opt/eclipse
      set BIN=/opt/eclipse
      if ( -d /opt/eclipse ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/eclipse
      if ( 0 != 0 ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/ganglia-binaries.csh ) then
      if ( 1 ) then
      source /etc/profile.d/ganglia-binaries.csh
      set GANGLIA_HOME=/opt/ganglia
      set BIN=/opt/ganglia/bin
      set SBIN=/opt/ganglia/sbin
      if ( -d /opt/ganglia/bin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/ganglia/bin
      if ( 0 != 0 ) then
      endif
      if ( -d /opt/ganglia/sbin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/ganglia/sbin
      if ( 0 != 0 ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/glib2.csh ) then
      if ( 1 ) then
      source /etc/profile.d/glib2.csh
      setenv G_BROKEN_FILENAMES 1
      else
      endif
      end
      if ( -r /etc/profile.d/gnome-ssh-askpass.csh ) then
      if ( 1 ) then
      source /etc/profile.d/gnome-ssh-askpass.csh
      setenv SSH_ASKPASS /usr/libexec/openssh/gnome-ssh-askpass
      else
      endif
      end
      if ( -r /etc/profile.d/java.csh ) then
      if ( 1 ) then
      source /etc/profile.d/java.csh
      setenv JAVA_HOME /usr/java/latest
      set BIN=/usr/java/latest/bin
      if ( -d /usr/java/latest/bin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /usr/java/latest/bin
      if ( 0 != 0 ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/lang.csh ) then
      if ( 1 ) then
      source /etc/profile.d/lang.csh
      set sourced=0
      if ( 1 ) then
      set saved_lang=en_US.iso885915
      if ( -f /home/user/.i18n ) then
      setenv LANG en_US.iso885915
      unset saved_lang
      else
      if ( 0 == 1 ) then
      else
      endif
      end
      if ( -r /etc/profile.d/less.csh ) then
      if ( 1 ) then
      source /etc/profile.d/less.csh
      if ( -x /usr/bin/lesspipe.sh ) then
      setenv LESSOPEN |/usr/bin/lesspipe.sh %s
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/maven.csh ) then
      if ( 1 ) then
      source /etc/profile.d/maven.csh
      setenv MAVEN_HOME /opt/maven
      set BIN=/opt/maven/bin
      if ( -d /opt/maven/bin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/maven/bin
      if ( 0 != 0 ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/modules.csh ) then
      if ( 1 ) then
      source /etc/profile.d/modules.csh
      if ( 1 ) then
      set modules_shell=tcsh
      else
      set exec_prefix=/usr/bin
      set prefix=
      set postfix=
      if ( 0 ) then
      set histchar = !
      endif
      if ( 1 ) then
      set prefix = set _prompt="$prompt";set prompt="";
      set postfix = set prompt="$_prompt";unset _prompt;
      endif
      if ( 0 ) then
      set postfix = set _exit=$status; set prompt="$_prompt";unset _prompt;; test 0 = $_exit;
      alias module set _prompt="$prompt";set prompt="";eval `/usr/bin/modulecmd tcsh !*`; set _exit=$status; set prompt="$_prompt";unset _prompt;; test 0 = $_exit;
      unset exec_prefix
      unset prefix
      unset postfix
      setenv MODULESHOME /usr/share/Modules
      if ( ! 1 ) then
      if ( ! 1 ) then
      else
      endif
      end
      if ( -r /etc/profile.d/pdsh.csh ) then
      if ( 1 ) then
      source /etc/profile.d/pdsh.csh
      set PDSHROOT=/opt/pdsh
      set BIN=/opt/pdsh/bin
      if ( -d /opt/pdsh/bin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/pdsh/bin
      if ( 0 != 0 ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/qt.csh ) then
      if ( 1 ) then
      source /etc/profile.d/qt.csh
      if ( 1 ) then
      exit
      else
      endif
      end
      if ( -r /etc/profile.d/rocks-binaries.csh ) then
      if ( 1 ) then
      source /etc/profile.d/rocks-binaries.csh
      setenv ROCKS_ROOT /opt/rocks
      set BIN=/opt/rocks/bin
      set SBIN=/opt/rocks/bin
      if ( -d /opt/rocks/bin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/rocks/bin
      if ( 0 != 0 ) then
      endif
      if ( -d /opt/rocks/bin ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/rocks/bin
      if ( 0 != 0 ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/rocks-devel.csh ) then
      if ( 1 ) then
      source /etc/profile.d/rocks-devel.csh
      setenv ROCKSROOT /opt/rocks/share/devel
      setenv ROLLSROOT /opt/rocks/share/devel/src/roll
      else
      endif
      end
      if ( -r /etc/profile.d/rocks-hpc.csh ) then
      if ( 1 ) then
      source /etc/profile.d/rocks-hpc.csh
      if ( ! 0 ) then
      set _prompt=%{\033]0;%n@%m:%c\007%}[%n@%m %c]%#
      set prompt=
      eval `/usr/bin/modulecmd tcsh -s add rocks-openmpi`
      /usr/bin/modulecmd tcsh -s add rocks-openmpi
      set _exit=0
      set prompt=%{\033]0;%n@%m:%c\007%}[%n@%m %c]%#
      unset _prompt
      test 0 = 0
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/rocks-lang.csh ) then
      if ( 1 ) then
      source /etc/profile.d/rocks-lang.csh
      if ( 1 ) then
      if ( xterm == linux ) then
      endif
      else
      endif
      end
      if ( -r /etc/profile.d/sge-binaries.csh ) then
      if ( 1 ) then
      source /etc/profile.d/sge-binaries.csh
      setenv SGE_ROOT /opt/gridengine
      setenv SGE_ARCH `$SGE_ROOT/util/arch`
      /opt/gridengine/util/arch
      set DEFAULTMANPATH = `$SGE_ROOT/util/arch -m`
      /opt/gridengine/util/arch -m
      set MANTYPE = `$SGE_ROOT/util/arch -mt`
      /opt/gridengine/util/arch -mt
      setenv SGE_CELL default
      setenv SGE_QMASTER_PORT 536
      setenv SGE_EXECD_PORT 537
      set BIN=/opt/gridengine/bin/linux-x64
      if ( -d /opt/gridengine/bin/linux-x64 ) then
      echo /home/user/software/tophat-2.0.10.Linux_x86_64:/home/user/software/samtools-0.1.19:/home/user/software/bowtie2-2.2.1:/home/user/software/boost_1_55_0:/home/user/software/Mus_musculus:/home/user/software/bowtie-1.0.1:/home/user/software/FastQC:/home/user/software/bedtools2-2.19.1/bin:/home/user/software/cufflinks-2.2.0.Linux_x86_64:/home/user/software/bin:/home/user/software/STAR_2.3.0e.Linux_x86_64:/home/user/software/sratoolkit.2.3.5-2-ubuntu64/bin:/home/user/software/Python-2.7.8:/home/user/software/pysam-0.8.0:/home/user/software/CIRCexplorer-1.0.3:/home/user/software/Python-2.7.8/lib/python2.7/site-packages/pysam-0.8.0-py2.7-linux-x86_64.egg/pysam/__init__.pyc':/opt/openmpi/bin:/usr/lib64/qt-3.3/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/opt/eclipse:/opt/ganglia/bin:/opt/ganglia/sbin:/usr/java/latest/bin:/opt/maven/bin:/opt/pdsh/bin:/opt/rocks/bin:/opt/rocks/sbin:/opt/gridengine/bin/linux-x64:/home/user/bin
      /bin/grep -q /opt/gridengine/bin/linux-x64
      if ( 0 != 0 ) then
      endif
      set shlib_path_name = `$SGE_ROOT/util/arch -lib`
      /opt/gridengine/util/arch -lib
      if ( `eval echo '$?'$shlib_path_name` ) then
      eval echo $?LD_LIBRARY_PATH
      echo 1
      set old_value = `eval echo '$'$shlib_path_name`
      eval echo $LD_LIBRARY_PATH
      echo /opt/gridengine/lib/linux-x64:/opt/openmpi/lib
      setenv LD_LIBRARY_PATH /opt/gridengine/lib/linux-x64:/opt/gridengine/lib/linux-x64:/opt/openmpi/lib
      else
      unset DEFAULTMANPATH MANTYPE shlib_path_name
      else
      endif
      end
      if ( -r /etc/profile.d/sge-mpi.csh ) then
      if ( 1 ) then
      source /etc/profile.d/sge-mpi.csh
      setenv MPICH_PROCESS_GROUP no
      else
      endif
      end
      if ( -r /etc/profile.d/ssh-key.csh ) then
      if ( 1 ) then
      source /etc/profile.d/ssh-key.csh
      /bin/bash /etc/profile.d/ssh-key.sh
      else
      endif
      end
      if ( -r /etc/profile.d/vim.csh ) then
      if ( 1 ) then
      source /etc/profile.d/vim.csh
      if ( -x /usr/bin/id ) then
      if ( `/usr/bin/id -u` &gt 200 ) then
      /usr/bin/id -u
      alias vi vim
      endif
      endif
      else
      endif
      end
      unset i nonomatch
      endif
      endif
  
  </pre>