title: Partial Correlation in Python
body: <p>I ran a correlation matrix:</p>
  
  <pre><code>sns.pairplot(data.dropna())
  corr = data.dropna().corr()
  corr.style.background_gradient(cmap='coolwarm').set_precision(2)
  </code></pre>
  
  <p>and it looks like <code>advisory_pct</code> is fairly (0.57) negatively correlated to <code>all_brokerage_pct</code>. As far as I understand, I can claim that we are fairly certain that "when advisor has low % of advisory in his portfolio, he has high % of all brokerage in his portfolio".</p>
  
  <p>However this is a "pairwise" correlation, and we are not controlling for the effect of the rest of the possible variables. </p>
  
  <p>I searched SO and was not able to find how I can run a "partial correlation" where the correlation matrix can provide the correlation between every two variables- while controlling for the rest of the variables. For this purpose lets assume, <code>brokerage %</code> + <code>etf brokerage %</code> + <code>advisory %</code> + <code>all brokerage %</code> = ~100% of portfolio.</p>
  
  <p>Does such function exist?</p>
  
  <p><a href="https://i.stack.imgur.com/5M2VW.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/5M2VW.png" alt="enter image description here"></a>
  <a href="https://i.stack.imgur.com/mXKHW.png" rel="nofollow noreferrer"><img src="https://i.stack.imgur.com/mXKHW.png" alt="enter image description here"></a></p>
  
  <p>-- EDIT --
  Running the data as per <a href="https://stats.stackexchange.com/questions/288273/partial-correlation-in-panda-dataframe-python">https://stats.stackexchange.com/questions/288273/partial-correlation-in-panda-dataframe-python</a>:</p>
  
  <pre><code>dict = {'x1': [1, 2, 3, 4, 5], 'x2': [2, 2, 3, 4, 2], 'x3': [10, 9, 5, 4, 9], 'y' : [5.077, 32.330, 65.140, 47.270, 80.570]} 
  data = pd.DataFrame(dict, columns=['x1', 'x2', 'x3', 'y'])
  
  partial_corr_array = df.as_matrix()
  data_int = np.hstack((np.ones((partial_corr_array.shape[0],1)), partial_corr_array))
  print(data_int)
  [[  1.      1.      2.     10.      5.077]
   [  1.      2.      2.      9.     32.33 ]
   [  1.      3.      3.      5.     65.14 ]
   [  1.      4.      4.      4.     47.27 ]
   [  1.      5.      2.      9.     80.57 ]]
  arr = np.round(partial_corr(partial_corr_array)[1:, 1:], decimals=2)
  print(arr)
  [[ 1.    0.99  0.99  1.  ]
   [ 0.99  1.   -1.   -0.99]
   [ 0.99 -1.    1.   -0.99]
   [ 1.   -0.99 -0.99  1.  ]]
  corr_df = pd.DataFrame(arr, columns = data.columns, index = data.columns)
  print(corr_df)
      x1    x2    x3    y
  x1  1.00  0.99  0.99  1.00
  x2  0.99  1.00 -1.00 -0.99
  x3  0.99 -1.00  1.00 -0.99
  y   1.00 -0.99 -0.99  1.00
  </code></pre>
  
  <p>These correlations don't make much sense. Using my real data, I get a very similar result where all correlations are rounded to -1..</p>