title: Thread interrupt not ending blocking call on input stream read
body: <p>I'm using RXTX to read data from a serial port.  The reading is done within a thread spawned in the following manner:</p>
  
  <pre><code>CommPortIdentifier portIdentifier = CommPortIdentifier.getPortIdentifier(port);
  CommPort comm = portIdentifier.open("Whatever", 2000);
  SerialPort serial = (SerialPort)comm;
  ...settings
  Thread t = new Thread(new SerialReader(serial.getInputStream()));
  t.start();
  </code></pre>
  
  <p>The SerialReader class implements Runnable and just loops indefinitely, reading from the port and constructing the data into useful packages before sending it off to other applications.  However, I've reduced it down to the following simplicity:</p>
  
  <pre><code>public void run() {
    ReadableByteChannel byteChan = Channels.newChannel(in); //in = InputStream passed to SerialReader
    ByteBuffer buffer = ByteBuffer.allocate(100);
    while (true) {
      try {
        byteChan.read(buffer);
      } catch (Exception e) {
        System.out.println(e);
      }
    }
  }
  </code></pre>
  
  <p>When a user clicks a stop button, the following functionality fires that should in theory close the input stream and break out of the blocking byteChan.read(buffer) call.  The code is as follows:</p>
  
  <pre><code>public void stop() {
    t.interrupt();
    serial.close();
  }
  </code></pre>
  
  <p>However, when I run this code, I never get a ClosedByInterruptException, which SHOULD fire once the input stream closes.  Furthermore, the execution blocks on the call to serial.close() -- because the underlying input stream is still blocking on the read call.  I've tried replacing the interrupt call with byteChan.close(), which should then cause an AsynchronousCloseException, however, I'm getting the same results.</p>
  
  <p>Any help on what I'm missing would be greatly appreciated.</p>