title: Trouble using shinyapps.io and rconnect to host .Rmd report
body: <p>I have an .Rmd file for a report that makes use of the following libraries: lubridate, plotly, DT, pracma, plyr, dplyr, scales. My goal is to host this document on shinyapps.io so that my manager can easily access it through a link. Unfortunately, when I try to deploy by running the following code:</p>
  
  <pre><code>rsconnect::setAccountInfo(name='myAccount',
            token='myToken',
            secret='mySecret')
  
  library(rsconnect)
  
  rsconnect::deployDoc('myFile.Rmd')
  </code></pre>
  
  <p>It says that the deployment was successful, but the loaded webpage just gives an error. This is what I'm getting in my log:</p>
  
  <pre><code>...
  ...
  ... 
  2019-08-13T02:29:26.571244+00:00 shinyapps[1080409]: Warning: Error in 
  library: there is no package called 'lubridate'
  2019-08-13T02:29:26.577255+00:00 shinyapps[1080409]:   151: stop
  2019-08-13T02:29:26.577257+00:00 shinyapps[1080409]:   150: library
  2019-08-13T02:29:26.577258+00:00 shinyapps[1080409]:   148: eval
  2019-08-13T02:29:26.577258+00:00 shinyapps[1080409]:   149: eval
  2019-08-13T02:29:26.577259+00:00 shinyapps[1080409]:   143: evaluate_call
  2019-08-13T02:29:26.577260+00:00 shinyapps[1080409]:   142: evaluate::evaluate
  2019-08-13T02:29:26.577260+00:00 shinyapps[1080409]:   141: evaluate
  2019-08-13T02:29:26.577261+00:00 shinyapps[1080409]:   138: call_block
  2019-08-13T02:29:26.577261+00:00 shinyapps[1080409]:   139: block_exec
  2019-08-13T02:29:26.577262+00:00 shinyapps[1080409]:   137: process_group.block
  2019-08-13T02:29:26.577262+00:00 shinyapps[1080409]:   134: process_file
  2019-08-13T02:29:26.577262+00:00 shinyapps[1080409]:   133: knitr::knit
  2019-08-13T02:29:26.577263+00:00 shinyapps[1080409]:   132: &lt;Anonymous&gt;
  2019-08-13T02:29:26.577263+00:00 shinyapps[1080409]:   127: &lt;reactive&gt;
  2019-08-13T02:29:26.577264+00:00 shinyapps[1080409]:   111: doc
  2019-08-13T02:29:26.577264+00:00 shinyapps[1080409]:   110: shiny::renderUI
  2019-08-13T02:29:26.577265+00:00 shinyapps[1080409]:   109: func
  2019-08-13T02:29:26.577265+00:00 shinyapps[1080409]:    96: origRenderFunc
  2019-08-13T02:29:26.577266+00:00 shinyapps[1080409]:    95: output$__reactivedoc__
  2019-08-13T02:29:26.577266+00:00 shinyapps[1080409]:    15: &lt;Anonymous&gt;
  2019-08-13T02:29:26.577267+00:00 shinyapps[1080409]:    12: fn
  2019-08-13T02:29:26.577266+00:00 shinyapps[1080409]:    13: rmarkdown::run
  2019-08-13T02:29:26.577267+00:00 shinyapps[1080409]:     7: connect$retry
  2019-08-13T02:29:26.577268+00:00 shinyapps[1080409]:     6: eval
  2019-08-13T02:29:26.577268+00:00 shinyapps[1080409]:     5: eval
  </code></pre>
  
  <p>For context, lubridate is the first package I attempt to load in the R script. I've both run the rconnect code and tried to use the publishing button, but to no avail. </p>
  
  <p>I've also followed the suggestions in this thread, also to no avail: <a href="https://stackoverflow.com/questions/38777265/deploy-a-rmd-interactive-doc-with-shinyapps-io">deploy a Rmd interactive doc with Shinyapps.io</a></p>
  
  <p>Does anyone know what's happening? Am I even approaching this task the right way? If not, how should it be done? Finally, if I'm well and truly screwed here, is there an alternative method that can more easily/reliably be used to host an .Rmd report?</p>
  
  <p>Update: deployment logs for those who have asked</p>
  
  <p>from my R console:</p>
  
  <pre><code>&gt; rsconnect::setAccountInfo(name='myAccount',
  +             token='myToken',
  +             secret='mySecret')
  &gt; library(rsconnect)
  &gt; rsconnect::deployDoc('myFile')
  Discovering document dependencies... OK
  Preparing to deploy document...
  Update application currently deployed at
  https://r3dp4nda.shinyapps.io/nf_subjective_measures/? [Y/n] Y
  DONE
  Uploading bundle for document: 1080409...DONE
  Deploying bundle: 2313819 for document: 1080409 ...
  Waiting for task: 638103202
    building: Processing bundle: 2313819
    building: Building image: 2452900
    building: Installing system dependencies
    building: Installing packages
    building: Installing files
    building: Pushing image: 2452900
    deploying: Starting instances
    rollforward: Activating new instances
    terminating: Stopping old instances
  Document successfully deployed to https://myAccount.shinyapps.io/myFile/
  </code></pre>
  
  <p>from shinyapps.io:</p>
  
  <pre><code>2019-08-13T14:13:56.809840+00:00 shinyapps[1080409]: 
  2019-08-13T14:13:56.809842+00:00 shinyapps[1080409]: Listening on http://127.0.0.1:37180
  2019-08-13T14:14:03.507715+00:00 shinyapps[1080409]: 
  2019-08-13T14:14:04.240749+00:00 shinyapps[1080409]: 
  2019-08-13T14:14:04.240752+00:00 shinyapps[1080409]: 
  2019-08-13T14:14:04.240753+00:00 shinyapps[1080409]: processing file: NF_Subjective_Measures.Rmd
  2019-08-13T14:14:04.252522+00:00 shinyapps[1080409]: 
    |                                                                       
    |                                                                 |   0%
    |                                                                       
    |...                                                              |   4%
  2019-08-13T14:14:04.259030+00:00 shinyapps[1080409]:  $ include: logi FALSE
  2019-08-13T14:14:04.252728+00:00 shinyapps[1080409]: 
  2019-08-13T14:14:04.253325+00:00 shinyapps[1080409]: 
    |                                                                       
    |......                                                           |   9%
  2019-08-13T14:14:04.254679+00:00 shinyapps[1080409]: label: unnamed-chunk-1 (with options) 
  2019-08-13T14:14:04.256983+00:00 shinyapps[1080409]: List of 2
  2019-08-13T14:14:04.258442+00:00 shinyapps[1080409]:  $ eval   : logi FALSE
  2019-08-13T14:14:04.259044+00:00 shinyapps[1080409]: 
  2019-08-13T14:14:04.263676+00:00 shinyapps[1080409]: 
    |                                                                       
    |........                                                         |  13%
  2019-08-13T14:14:04.263722+00:00 shinyapps[1080409]:   ordinary text without R code
  2019-08-13T14:14:04.263943+00:00 shinyapps[1080409]: 
    |                                                                       
    |...........                                                      |  17%
  2019-08-13T14:14:04.264450+00:00 shinyapps[1080409]: label: unnamed-chunk-2 (with options) 
  2019-08-13T14:14:04.252725+00:00 shinyapps[1080409]:   ordinary text without R code
  2019-08-13T14:14:04.264710+00:00 shinyapps[1080409]: List of 1
  2019-08-13T14:14:04.265360+00:00 shinyapps[1080409]:  $ echo: logi FALSE
  2019-08-13T14:14:04.265372+00:00 shinyapps[1080409]: 
  2019-08-13T14:14:04.308108+00:00 shinyapps[1080409]: Warning: Error in library: there is no package called 'lubridate'
  </code></pre>