title: Make Python script combined with linux packages easy installable for end-user
body: <p>I wrote a python script that uses numpy, multiprocessing, tqdm and a feq other Python libraries. Additionally, I run packages (e.g. samtools, bwa, GATK) set are necessary to be installed in linux (apt-get install).</p>
  
  <p>I'd like to somehow wrap all these dependencies up to make the final installation as user-friendly and stable as possible. </p>
  
  <p>It seems as pip is not an option here as non-python-packages are included for my example.</p>
  
  <p>Maybe Docker or creating a conda environment with all these dependecies might be possible but I did not really get how to manage this.</p>