Datasets:

mskrt
/

PAIR

@@ -1,156 +0,0 @@
-# Copyright 2020 The HuggingFace Datasets Authors and the current dataset script contributor.
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-import csv
-import json
-import os
-import datasets
-# TODO: Add BibTeX citation
-# Find for instance the citation on arxiv or on the dataset repo/website
-_CITATION = """\
-@article{duan2024boosting,
-  title={Boosting the Predictive Power of Protein Representations with a Corpus of Text Annotations},
-  author={Duan, Haonan and Skreta, Marta and Cotta, Leonardo and Rajaonson, Ella Miray and Dhawan, Nikita and Aspuru-Guzik, Alán and Maddison, Chris J},
-  journal={bioRxiv},
-  pages={2024--07},
-  year={2024},
-  publisher={Cold Spring Harbor Laboratory}
-}
-"""
-_DESCRIPTION = """\
-This new dataset is designed to solve this great NLP task and is crafted with a lot of care.
-"""
-# TODO: Add a link to an official homepage for the dataset here
-_HOMEPAGE = ""
-# TODO: Add the licence for the dataset here if you can find it
-_LICENSE = ""
-# TODO: Add link to the official dataset URLs here
-# The HuggingFace Datasets library doesn't host the datasets but only points to the original files.
-# This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method)
-_URLS = {
-    "first_domain": "https://huggingface.co/great-new-dataset-first_domain.zip",
-    "second_domain": "https://huggingface.co/great-new-dataset-second_domain.zip",
-}
-# TODO: Name of the dataset usually matches the script name with CamelCase instead of snake_case
-class PAIRDataset(datasets.GeneratorBasedBuilder):
-    """TODO: Short description of my dataset."""
-    VERSION = datasets.Version("1.1.0")
-    # This is an example of a dataset with multiple configurations.
-    # If you don't want/need to define several sub-sets in your dataset,
-    # just remove the BUILDER_CONFIG_CLASS and the BUILDER_CONFIGS attributes.
-    # If you need to make complex sub-parts in the datasets with configurable options
-    # You can create your own builder configuration class to store attribute, inheriting from datasets.BuilderConfig
-    # BUILDER_CONFIG_CLASS = MyBuilderConfig
-    # You will be able to load one or the other configurations in the following list with
-    # data = datasets.load_dataset('my_dataset', 'first_domain')
-    # data = datasets.load_dataset('my_dataset', 'second_domain')
-    BUILDER_CONFIGS = [
-        datasets.BuilderConfig(name="first_domain", version=VERSION, description="This part of my dataset covers a first domain"),
-        datasets.BuilderConfig(name="second_domain", version=VERSION, description="This part of my dataset covers a second domain"),
-    ]
-    DEFAULT_CONFIG_NAME = "first_domain"  # It's not mandatory to have a default configuration. Just use one if it make sense.
-    def _info(self):
-        # TODO: This method specifies the datasets.DatasetInfo object which contains informations and typings for the dataset
-        if self.config.name == "first_domain":  # This is the name of the configuration selected in BUILDER_CONFIGS above
-            features = datasets.Features(
-                {
-                    "sentence": datasets.Value("string"),
-                    "option1": datasets.Value("string"),
-                    "answer": datasets.Value("string")
-                    # These are the features of your dataset like images, labels ...
-                }
-            )
-        else:  # This is an example to show how to have different features for "first_domain" and "second_domain"
-            features = datasets.Features(
-                {
-                    "sentence": datasets.Value("string"),
-                    "option2": datasets.Value("string"),
-                    "second_domain_answer": datasets.Value("string")
-                    # These are the features of your dataset like images, labels ...
-                }
-            )
-        return datasets.DatasetInfo(
-            # This is the description that will appear on the datasets page.
-            description=_DESCRIPTION,
-            # This defines the different columns of the dataset and their types
-            features=features,  # Here we define them above because they are different between the two configurations
-            # If there's a common (input, target) tuple from the features, uncomment supervised_keys line below and
-            # specify them. They'll be used if as_supervised=True in builder.as_dataset.
-            # supervised_keys=("sentence", "label"),
-            # Homepage of the dataset for documentation
-            homepage=_HOMEPAGE,
-            # License for the dataset if available
-            license=_LICENSE,
-            # Citation for the dataset
-            citation=_CITATION,
-        )
-    def _split_generators(self, dl_manager):
-        # TODO: This method is tasked with downloading/extracting the data and defining the splits depending on the configuration
-        # If several configurations are possible (listed in BUILDER_CONFIGS), the configuration selected by the user is in self.config.name
-        # dl_manager is a datasets.download.DownloadManager that can be used to download and extract URLS
-        # It can accept any type or nested list/dict and will give back the same structure with the url replaced with path to local files.
-        # By default the archives will be extracted and a path to a cached folder where they are extracted is returned instead of the archive
-        urls = _URLS[self.config.name]
-        data_dir = dl_manager.download_and_extract(urls)
-        return [
-            datasets.SplitGenerator(
-                name=datasets.Split.TRAIN,
-                # These kwargs will be passed to _generate_examples
-                gen_kwargs={
-                    "filepath": os.path.join(data_dir, "train.json"),
-                    "split": "train",
-                },
-            ),
-            datasets.SplitGenerator(
-                name=datasets.Split.TEST,
-                # These kwargs will be passed to _generate_examples
-                gen_kwargs={
-                    "filepath": os.path.join(data_dir, "test.json"),
-                    "split": "test"
-                },
-            ),
-        ]
-    # method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
-    def _generate_examples(self, filepath, split):
-        # TODO: This method handles input defined in _split_generators to yield (key, example) tuples from the dataset.
-        # The `key` is for legacy reasons (tfds) and is not important in itself, but must be unique for each example.
-        with open(filepath, encoding="utf-8") as f:
-            for key, row in enumerate(f):
-                data = json.loads(row)
-                if data['content'] != [None]:
-                    yield key, {
-                        "sequence": data["seq"],
-                        "pid": data["pid"],
-                        #"content": "" if split == "test" else data["answer"],
-                        "content": data['content'][0],
-                    }