question: @ Override public void apply ( NexusStreamParser np ) throws Exception { np . matchIgnoreCase ( "set sortreads=" ) ; String which = np . getWordMatchesIgnoringCase ( "alphabetically no" ) ; np . matchIgnoreCase ( ";" ) ; InspectorWindow inspectorWindow = ( InspectorWindow ) getViewer ( ) ; inspectorWindow . setSortReadsAlphabetically ( which . equalsIgnoreCase ( "alphabetically" ) ) ; }
target:  parses the given command and executes it