After the Onin War, the temple was moved to Takatsuji Karasuma (present-day Shimogyo-ku Ward, Kyoto City) before being relocated again between 1573 and 1592 by Hideyoshi TOYOTOMI to Shijo Kyogoku where it stood throughout the early modern period.
応仁の乱の後、寺は高辻烏丸（現・京都市下京区）に移転し、さらに天正年間（1573-1592）に豊臣秀吉によって四条京極へ移転させられて、近世を通じて同地にあった。