During the Hogen Disturbance, 40 locations of Mokkanryo which belonged to FUJIWARA no Yorinaga and TAIRA no Tadamasa became Goinryo (lands attached to the palace of a retired emperor), and during the Genpei War, 500 locations of Mokkanryo which belonged to the Taira clan were given to MINAMOTO no Yoshinaka at first and then after the downfall of Yoshinaka, they were given to MINAMOTO no Yoritomo.
保元の乱の際の藤原頼長・平忠正らの没官領40ヶ所が後院領となり、源平合戦時の平家没官領500ヶ所は当初は源義仲に与えられその没落後は源頼朝に与えられた。