To distinguish the Subway Line or the Kintetsu Line from the JR Line, when you take the Subway Line the station is often called 'Subway Kyoto Station (Karasuma Line Kyoto Station),' but when you take the Kintetsu Line it is often called 'Kintetsu Kyoto Station.'
JR線、地下鉄線、近鉄線を区別するのに、地下鉄線は「地下鉄京都駅（烏丸線京都駅）」、近鉄線は「近鉄京都駅」と呼ばれる事が多い。