The mausoleum in the precincts of Jingo-ji Temple where WAKE no Kiyomaro was enshrined underwent the denomination change and came to be called Goo-jinja Shrine, designated as one of the Bekkaku-Kanpeisha (special government shrines), and was transferred from the precincts of Jingo-ji Temple to in front of Hamaguri-gomon gate of Kyoto Imperial Palace by the order of Emperor Meiji.
神護寺の境内にあった和気清麻呂を祀った廟は護王神社と改称され別格官幣社に列し、、明治天皇の勅命により、神護寺境内から京都御所蛤御門前に遷座した。