Throughout the Edo period, the Fujikake clan maintained its status as a taishin hatamoto (greater vassal) (4,000 koku), whose jinya (headquarters) was located in the Yatsuai district in Kanbayashi (currently: Yatsuai-machi, Ayabe City, Kyoto Prefecture).
江戸時代を通じて、藤掛氏（藤懸氏）は上林八津合（現在の綾部市八津合町）に陣屋を構える大身旗本（4000石）として存続した。