At this time Yoshiaki was also arrested by Hisahide MATSUNAGA and confined at Kofuku-ji Temple (it is said that Hisahide did not kill Kakukei because he was afraid of having Kofuku-ji Temple for an enemy; Kakukei was Shogun's brother and promised to be Betto (director) of Kofuku-ji Temple in future).
このとき、義昭も松永久秀らによって捕縛され、興福寺に幽閉された（久秀らは覚慶が将軍の弟で、なおかつ将来は興福寺別当の職を約束されていたことから、覚慶を殺すことで興福寺を敵に回すことを恐れて、幽閉にとどめたとされる）。