The main sanctuary (center shrine) enshrines the main deities of Susanoo, Wakeikazuchi no mikoto, Yamato Takeru, the Emperor Ojin, the Empress Jingu, TAKEUCHI no Sukune and the Emperor Nintoku; the eastern sanctuary (eastern shrine) enshrines the Emperor Tenmu and the Emperor Sudo Jinkei (Imperial Prince Toneri); the western sanctuary (western shrine) enshrines the Emperor Sudo (Imperial Prince Sawara), the Imperial Prince Iyo and the Imperial Princess Inoue.
本殿（中座）に主祭神・スサノオと別雷命・ヤマトタケル・応神天皇・神功皇后・武内宿禰・仁徳天皇、東殿（東座）に天武天皇・崇道尽敬皇帝（舎人親王）、西殿（西座）に崇道天皇（早良親王）・伊予親王・井上内親王を祀る。