Thereafter, while in Yoshimitsu's time the country was pacified, following the Onin War the entire country became engulfed in strife (the Sengoku period) and as the shoen-koryo system fell apart, a new system came into existence to replace it.
その後、義満の時代に国内は安定したものの、応仁の乱をへて全国動乱の時代（戦国時代）を迎え荘園公領制が崩壊して新秩序が成立した。