However, triggered by the dispute over naming of the Ikko sect (the issue that government attempted to enforce the name of 'Ikko' as an official name on the Jodo Shinshu sect even though the sect had officially rejected it), the repugnance against the government grew within the Jodo Shinshu sect, and the Jodo Shinshu sect withdrew from Kyobusho after the policy of Kyobusho reached a deadlock on the basis of the separation of religion and politics.
一向宗宗名論争（浄土真宗が公式に否認している「一向宗」を宗派名として強要しようとした問題）を機に浄土真宗内部からも政府への反発が高まってきたこともあり、教部省の施策が暗礁に乗り上げると政教分離の観点から脱退するといった動きを見せた。