Hiyoshi Station has a single track crossing loop configuration on the Fukuchiyama side of Platform 1, where Platform 1 is used mainly for the Limited Express trains that pass through the station and Platform 2 is used mainly for trains that stop at the station.
1番のりばの福知山寄りが一線スルーとなっているが、1番のりばは主として特急の通過に使われ、停車列車は主に2番のりばに停車する。