Under the Kyoto Shugoshoku was the Kyoto Shoshidai, the Kyoto Machibugyo, and the Mimawariyaku (patrol troops) and the Kyoto Mimawariyaku, that was under the Mimawariyaku formed by the bakufu's direct followers and also incorporated under the Kyoto Shugoshoku.
京都守護職は京都所司代・京都町奉行・見廻役を傘下に置き、見廻役配下で幕臣により結成された京都見廻組も支配下となった。