The place where Shinnyosanmayado was built-- the site of the Hokke Sanmai-do, which was constructed soon after Daigo-ji Temple was built (it was burned down in a battle on September 24, 1470)--is located at the bottom part of Daigo-ji Temple, marking the realization of Emperor Daigo's wish.
真如三昧耶堂のある場所は、醍醐寺開創間もない頃に建立された法華三昧堂（文明(日本)2年（1470年）8月20日戦火により炎上）の跡地で、醍醐天皇の誓願を実現した醍醐寺の下伽藍に位置する。