Even after the Omuro school, Daigo school, Daikakuji school and others separated, Kaju-ji Temple remained part of the Shingon Sect but became independent and divided into the Yamashina school, Ono school, Toji school and Sennyuji school in 1907.
御室派、醍醐派、大覚寺派等が分立した後も勧修寺は「真言宗」にとどまっていたが、明治40年（1907年）には当時の「真言宗」が解消されて山階派、小野派、東寺派、泉涌寺派として独立。