In the latter part of the Kamakura Period, the Emperor Godaigo started an anti-Shogunate movement and when the Kenmu Restoration by the Emperor Godaigo began after the fall of the Shogunate, the Five Mountain System was reformed to meet with Kyoto.
鎌倉時代後期に後醍醐天皇は討幕運動を起し、幕府滅亡後に後醍醐による建武の新政が開始されると五山も京都本位に改められた。