As it is mentioned in the next clause, even in the Emperor Organ Theory, it is considered that the emperor has sovereign power with reference to a right to make a final decision on state's intentions, and the emperor's authority hasn't been denied.
次節でみるように、天皇機関説においても、国家意思終局的決定権の意味での主権は天皇にあると考えられており、天皇の権限は否定されていない。