The Emperor was cremated and his remains were kept at Jo Kongo-in Temple in Sagano, Kameyama dono Hokke do, Nanzen-ji Temple built by the Cloistered Emperor Kameyama, Mt. Koya Kongobu-ji, however Kameyama dono Hokke do was considered as the Imperial mausoleum, which is currently Kameyama no Misasagi located within Tenryu-ji Temple in Susuki no Baba-cho, Saga Tenryu-ji, Ukyo Ward, Kyoto City.
遺体は火葬に付され、嵯峨野にあった浄金剛院や亀山殿法華堂、法皇御願の南禅寺、高野山金剛峯寺にそれぞれ分骨されたが、亀山殿法華堂を以って天皇陵とし、現在は京都市右京区嵯峨天龍寺芒ノ馬場町の天龍寺境内にある亀山陵（かめやまのみささぎ）である。