Although the residence was rebuilt 9 years later, the Nijo family experienced hardship due to the successive deaths of family heads (Tadafusa NIJO, who became a family head at the age of 2 in 1497, was killed during the Revolt of Taineiji), and followed the course of ruin both politically and economically.
9年後に建物は再建されたものの、これを機に二条家は当主の急死が相次ぎ（明応6年（1497年）には2歳の二条尹房が当主となるが大寧寺の変で殺害されている）、政治的にも経済的にも没落の一途を辿っていった。