France's "issues" with their Muslim population have more to do with France's treatment, segregation, bigotry, and alienation of that population than it does the Muslims themselves. And it's not just the North Africans who have this problem. Americans who've lived in France for 15 years, speak fluent French etc. have reported clear discrimination from the native French, because they aren't "authentic" French.  

https://academic.udayton.edu/race/06hrights/GeoRegions/Europe/France01.htm