The issue is that plenty of the issues have nothing to do with religious freedom.  Abortion is first and foremost a human rights issue and there are plenty of atheists who would agree with me.

On actual religious freedom, there is often a double standard.  Catholics are told to keep their religious views to themselves and yet at the same time the very people telling them to do this viciously attack the Church for not getting with the times.  One only has to look at Canada where certain bible verses are now considered "hate speech".