That closing ministries thing has been a joke from the beginning.   Catholic universities and corporations founded by no-longer-functioning religious congregations almost universally were offering normal commercial insurance plans -- which cover all these reproductive services -- before Obama and will continue to do so for the foreseeable future.  
Why?  Because they have to compete in the employee market for acceptable licensed practitioners like everyone else in their industries.   Their employees are not all Catholic--nowhere near it and they want normal commercial insurance benefits.  These institutions are hospitals & universities, public corporations much like any others.  They'll charge you every bit as much for that procedure as they will your atheist buddy at work.  It's a business.

Proof:  Think of the 2 biggest & most prestigious Catholic universities in the US?  Did they close their doors?  Do you really think they will over this?