{"action":"opened","number":1159,"pull_request":{"url":"https://api.github.com/repos/spacetx/starfish/pulls/1159","id":268929092,"node_id":"MDExOlB1bGxSZXF1ZXN0MjY4OTI5MDky","html_url":"https://github.com/spacetx/starfish/pull/1159","diff_url":"https://github.com/spacetx/starfish/pull/1159.diff","patch_url":"https://github.com/spacetx/starfish/pull/1159.patch","issue_url":"https://api.github.com/repos/spacetx/starfish/issues/1159","number":1159,"state":"open","locked":false,"title":"Demonstrate that starfish outputs can be used in R","user":{"login":"ambrosejcarr","id":5239152,"node_id":"MDQ6VXNlcjUyMzkxNTI=","avatar_url":"https://avatars1.githubusercontent.com/u/5239152?v=4","gravatar_id":"","url":"https://api.github.com/users/ambrosejcarr","html_url":"https://github.com/ambrosejcarr","followers_url":"https://api.github.com/users/ambrosejcarr/followers","following_url":"https://api.github.com/users/ambrosejcarr/following{/other_user}","gists_url":"https://api.github.com/users/ambrosejcarr/gists{/gist_id}","starred_url":"https://api.github.com/users/ambrosejcarr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ambrosejcarr/subscriptions","organizations_url":"https://api.github.com/users/ambrosejcarr/orgs","repos_url":"https://api.github.com/users/ambrosejcarr/repos","events_url":"https://api.github.com/users/ambrosejcarr/events{/privacy}","received_events_url":"https://api.github.com/users/ambrosejcarr/received_events","type":"User","site_admin":false},"body":"Adds documentation demonstrating how to use starfish outputs in R\r\n\r\n* docs for IntensityTable and DecodedSpots\r\n* adds example data files and README.rst declaring file contents\r\n\r\nReview strategy: \r\n\r\nI think the reviewer probably needs to fire up R and verify this works. There's no R CI on starfish. ","created_at":"2019-04-09T21:19:04Z","updated_at":"2019-04-09T21:19:04Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"assignees":[],"requested_reviewers":[{"login":"dganguli","id":2704460,"node_id":"MDQ6VXNlcjI3MDQ0NjA=","avatar_url":"https://avatars3.githubusercontent.com/u/2704460?v=4","gravatar_id":"","url":"https://api.github.com/users/dganguli","html_url":"https://github.com/dganguli","followers_url":"https://api.github.com/users/dganguli/followers","following_url":"https://api.github.com/users/dganguli/following{/other_user}","gists_url":"https://api.github.com/users/dganguli/gists{/gist_id}","starred_url":"https://api.github.com/users/dganguli/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dganguli/subscriptions","organizations_url":"https://api.github.com/users/dganguli/orgs","repos_url":"https://api.github.com/users/dganguli/repos","events_url":"https://api.github.com/users/dganguli/events{/privacy}","received_events_url":"https://api.github.com/users/dganguli/received_events","type":"User","site_admin":false}],"requested_teams":[],"labels":[],"milestone":null,"commits_url":"https://api.github.com/repos/spacetx/starfish/pulls/1159/commits","review_comments_url":"https://api.github.com/repos/spacetx/starfish/pulls/1159/comments","review_comment_url":"https://api.github.com/repos/spacetx/starfish/pulls/comments{/number}","comments_url":"https://api.github.com/repos/spacetx/starfish/issues/1159/comments","statuses_url":"https://api.github.com/repos/spacetx/starfish/statuses/b52fd2e6b5cd3d43b933f6fbd031dd6531203a62","head":{"label":"spacetx:ajc-loading-outputs-in-r","ref":"ajc-loading-outputs-in-r","sha":"b52fd2e6b5cd3d43b933f6fbd031dd6531203a62","user":{"login":"spacetx","id":37218549,"node_id":"MDEyOk9yZ2FuaXphdGlvbjM3MjE4NTQ5","avatar_url":"https://avatars0.githubusercontent.com/u/37218549?v=4","gravatar_id":"","url":"https://api.github.com/users/spacetx","html_url":"https://github.com/spacetx","followers_url":"https://api.github.com/users/spacetx/followers","following_url":"https://api.github.com/users/spacetx/following{/other_user}","gists_url":"https://api.github.com/users/spacetx/gists{/gist_id}","starred_url":"https://api.github.com/users/spacetx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spacetx/subscriptions","organizations_url":"https://api.github.com/users/spacetx/orgs","repos_url":"https://api.github.com/users/spacetx/repos","events_url":"https://api.github.com/users/spacetx/events{/privacy}","received_events_url":"https://api.github.com/users/spacetx/received_events","type":"Organization","site_admin":false},"repo":{"id":92539237,"node_id":"MDEwOlJlcG9zaXRvcnk5MjUzOTIzNw==","name":"starfish","full_name":"spacetx/starfish","private":false,"owner":{"login":"spacetx","id":37218549,"node_id":"MDEyOk9yZ2FuaXphdGlvbjM3MjE4NTQ5","avatar_url":"https://avatars0.githubusercontent.com/u/37218549?v=4","gravatar_id":"","url":"https://api.github.com/users/spacetx","html_url":"https://github.com/spacetx","followers_url":"https://api.github.com/users/spacetx/followers","following_url":"https://api.github.com/users/spacetx/following{/other_user}","gists_url":"https://api.github.com/users/spacetx/gists{/gist_id}","starred_url":"https://api.github.com/users/spacetx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spacetx/subscriptions","organizations_url":"https://api.github.com/users/spacetx/orgs","repos_url":"https://api.github.com/users/spacetx/repos","events_url":"https://api.github.com/users/spacetx/events{/privacy}","received_events_url":"https://api.github.com/users/spacetx/received_events","type":"Organization","site_admin":false},"html_url":"https://github.com/spacetx/starfish","description":"starfish: standardized pipelines for image-based transcriptomics","fork":false,"url":"https://api.github.com/repos/spacetx/starfish","forks_url":"https://api.github.com/repos/spacetx/starfish/forks","keys_url":"https://api.github.com/repos/spacetx/starfish/keys{/key_id}","collaborators_url":"https://api.github.com/repos/spacetx/starfish/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/spacetx/starfish/teams","hooks_url":"https://api.github.com/repos/spacetx/starfish/hooks","issue_events_url":"https://api.github.com/repos/spacetx/starfish/issues/events{/number}","events_url":"https://api.github.com/repos/spacetx/starfish/events","assignees_url":"https://api.github.com/repos/spacetx/starfish/assignees{/user}","branches_url":"https://api.github.com/repos/spacetx/starfish/branches{/branch}","tags_url":"https://api.github.com/repos/spacetx/starfish/tags","blobs_url":"https://api.github.com/repos/spacetx/starfish/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/spacetx/starfish/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/spacetx/starfish/git/refs{/sha}","trees_url":"https://api.github.com/repos/spacetx/starfish/git/trees{/sha}","statuses_url":"https://api.github.com/repos/spacetx/starfish/statuses/{sha}","languages_url":"https://api.github.com/repos/spacetx/starfish/languages","stargazers_url":"https://api.github.com/repos/spacetx/starfish/stargazers","contributors_url":"https://api.github.com/repos/spacetx/starfish/contributors","subscribers_url":"https://api.github.com/repos/spacetx/starfish/subscribers","subscription_url":"https://api.github.com/repos/spacetx/starfish/subscription","commits_url":"https://api.github.com/repos/spacetx/starfish/commits{/sha}","git_commits_url":"https://api.github.com/repos/spacetx/starfish/git/commits{/sha}","comments_url":"https://api.github.com/repos/spacetx/starfish/comments{/number}","issue_comment_url":"https://api.github.com/repos/spacetx/starfish/issues/comments{/number}","contents_url":"https://api.github.com/repos/spacetx/starfish/contents/{+path}","compare_url":"https://api.github.com/repos/spacetx/starfish/compare/{base}...{head}","merges_url":"https://api.github.com/repos/spacetx/starfish/merges","archive_url":"https://api.github.com/repos/spacetx/starfish/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/spacetx/starfish/downloads","issues_url":"https://api.github.com/repos/spacetx/starfish/issues{/number}","pulls_url":"https://api.github.com/repos/spacetx/starfish/pulls{/number}","milestones_url":"https://api.github.com/repos/spacetx/starfish/milestones{/number}","notifications_url":"https://api.github.com/repos/spacetx/starfish/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/spacetx/starfish/labels{/name}","releases_url":"https://api.github.com/repos/spacetx/starfish/releases{/id}","deployments_url":"https://api.github.com/repos/spacetx/starfish/deployments","created_at":"2017-05-26T18:45:11Z","updated_at":"2019-04-09T00:28:14Z","pushed_at":"2019-04-09T21:18:09Z","git_url":"git://github.com/spacetx/starfish.git","ssh_url":"git@github.com:spacetx/starfish.git","clone_url":"https://github.com/spacetx/starfish.git","svn_url":"https://github.com/spacetx/starfish","homepage":"https://spacetx-starfish.readthedocs.io","size":68343,"stargazers_count":67,"watchers_count":67,"language":"Python","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":30,"mirror_url":null,"archived":false,"disabled":false,"open_issues_count":172,"license":{"key":"mit","name":"MIT License","spdx_id":"MIT","url":"https://api.github.com/licenses/mit","node_id":"MDc6TGljZW5zZTEz"},"forks":30,"open_issues":172,"watchers":67,"default_branch":"master"}},"base":{"label":"spacetx:ajc-is-starfish-for-me","ref":"ajc-is-starfish-for-me","sha":"9c002936d85b18179ea104fb74f5d9812bcd371c","user":{"login":"spacetx","id":37218549,"node_id":"MDEyOk9yZ2FuaXphdGlvbjM3MjE4NTQ5","avatar_url":"https://avatars0.githubusercontent.com/u/37218549?v=4","gravatar_id":"","url":"https://api.github.com/users/spacetx","html_url":"https://github.com/spacetx","followers_url":"https://api.github.com/users/spacetx/followers","following_url":"https://api.github.com/users/spacetx/following{/other_user}","gists_url":"https://api.github.com/users/spacetx/gists{/gist_id}","starred_url":"https://api.github.com/users/spacetx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spacetx/subscriptions","organizations_url":"https://api.github.com/users/spacetx/orgs","repos_url":"https://api.github.com/users/spacetx/repos","events_url":"https://api.github.com/users/spacetx/events{/privacy}","received_events_url":"https://api.github.com/users/spacetx/received_events","type":"Organization","site_admin":false},"repo":{"id":92539237,"node_id":"MDEwOlJlcG9zaXRvcnk5MjUzOTIzNw==","name":"starfish","full_name":"spacetx/starfish","private":false,"owner":{"login":"spacetx","id":37218549,"node_id":"MDEyOk9yZ2FuaXphdGlvbjM3MjE4NTQ5","avatar_url":"https://avatars0.githubusercontent.com/u/37218549?v=4","gravatar_id":"","url":"https://api.github.com/users/spacetx","html_url":"https://github.com/spacetx","followers_url":"https://api.github.com/users/spacetx/followers","following_url":"https://api.github.com/users/spacetx/following{/other_user}","gists_url":"https://api.github.com/users/spacetx/gists{/gist_id}","starred_url":"https://api.github.com/users/spacetx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spacetx/subscriptions","organizations_url":"https://api.github.com/users/spacetx/orgs","repos_url":"https://api.github.com/users/spacetx/repos","events_url":"https://api.github.com/users/spacetx/events{/privacy}","received_events_url":"https://api.github.com/users/spacetx/received_events","type":"Organization","site_admin":false},"html_url":"https://github.com/spacetx/starfish","description":"starfish: standardized pipelines for image-based transcriptomics","fork":false,"url":"https://api.github.com/repos/spacetx/starfish","forks_url":"https://api.github.com/repos/spacetx/starfish/forks","keys_url":"https://api.github.com/repos/spacetx/starfish/keys{/key_id}","collaborators_url":"https://api.github.com/repos/spacetx/starfish/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/spacetx/starfish/teams","hooks_url":"https://api.github.com/repos/spacetx/starfish/hooks","issue_events_url":"https://api.github.com/repos/spacetx/starfish/issues/events{/number}","events_url":"https://api.github.com/repos/spacetx/starfish/events","assignees_url":"https://api.github.com/repos/spacetx/starfish/assignees{/user}","branches_url":"https://api.github.com/repos/spacetx/starfish/branches{/branch}","tags_url":"https://api.github.com/repos/spacetx/starfish/tags","blobs_url":"https://api.github.com/repos/spacetx/starfish/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/spacetx/starfish/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/spacetx/starfish/git/refs{/sha}","trees_url":"https://api.github.com/repos/spacetx/starfish/git/trees{/sha}","statuses_url":"https://api.github.com/repos/spacetx/starfish/statuses/{sha}","languages_url":"https://api.github.com/repos/spacetx/starfish/languages","stargazers_url":"https://api.github.com/repos/spacetx/starfish/stargazers","contributors_url":"https://api.github.com/repos/spacetx/starfish/contributors","subscribers_url":"https://api.github.com/repos/spacetx/starfish/subscribers","subscription_url":"https://api.github.com/repos/spacetx/starfish/subscription","commits_url":"https://api.github.com/repos/spacetx/starfish/commits{/sha}","git_commits_url":"https://api.github.com/repos/spacetx/starfish/git/commits{/sha}","comments_url":"https://api.github.com/repos/spacetx/starfish/comments{/number}","issue_comment_url":"https://api.github.com/repos/spacetx/starfish/issues/comments{/number}","contents_url":"https://api.github.com/repos/spacetx/starfish/contents/{+path}","compare_url":"https://api.github.com/repos/spacetx/starfish/compare/{base}...{head}","merges_url":"https://api.github.com/repos/spacetx/starfish/merges","archive_url":"https://api.github.com/repos/spacetx/starfish/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/spacetx/starfish/downloads","issues_url":"https://api.github.com/repos/spacetx/starfish/issues{/number}","pulls_url":"https://api.github.com/repos/spacetx/starfish/pulls{/number}","milestones_url":"https://api.github.com/repos/spacetx/starfish/milestones{/number}","notifications_url":"https://api.github.com/repos/spacetx/starfish/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/spacetx/starfish/labels{/name}","releases_url":"https://api.github.com/repos/spacetx/starfish/releases{/id}","deployments_url":"https://api.github.com/repos/spacetx/starfish/deployments","created_at":"2017-05-26T18:45:11Z","updated_at":"2019-04-09T00:28:14Z","pushed_at":"2019-04-09T21:18:09Z","git_url":"git://github.com/spacetx/starfish.git","ssh_url":"git@github.com:spacetx/starfish.git","clone_url":"https://github.com/spacetx/starfish.git","svn_url":"https://github.com/spacetx/starfish","homepage":"https://spacetx-starfish.readthedocs.io","size":68343,"stargazers_count":67,"watchers_count":67,"language":"Python","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":30,"mirror_url":null,"archived":false,"disabled":false,"open_issues_count":172,"license":{"key":"mit","name":"MIT License","spdx_id":"MIT","url":"https://api.github.com/licenses/mit","node_id":"MDc6TGljZW5zZTEz"},"forks":30,"open_issues":172,"watchers":67,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/spacetx/starfish/pulls/1159"},"html":{"href":"https://github.com/spacetx/starfish/pull/1159"},"issue":{"href":"https://api.github.com/repos/spacetx/starfish/issues/1159"},"comments":{"href":"https://api.github.com/repos/spacetx/starfish/issues/1159/comments"},"review_comments":{"href":"https://api.github.com/repos/spacetx/starfish/pulls/1159/comments"},"review_comment":{"href":"https://api.github.com/repos/spacetx/starfish/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/spacetx/starfish/pulls/1159/commits"},"statuses":{"href":"https://api.github.com/repos/spacetx/starfish/statuses/b52fd2e6b5cd3d43b933f6fbd031dd6531203a62"}},"author_association":"MEMBER","merged":false,"mergeable":null,"rebaseable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"maintainer_can_modify":false,"commits":1,"additions":3841,"deletions":0,"changed_files":5}}
{"actor":{"display_login":"ambrosejcarr"}}