{"action":"created","comment":{"url":"https://api.github.com/repos/sunpy/sunkit-image/pulls/comments/298657161","pull_request_review_id":255839027,"id":298657161,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDI5ODY1NzE2MQ==","diff_hunk":"@@ -0,0 +1,147 @@\n+\"\"\"\n+========================\n+Removing Cosmic Ray Hits\n+========================\n+\n+This example illustrates how to remove cosmic ray hits from a LASCO C2 image (both `FITS` and `jp2`)\n+using `astroscrappy.detect_cosmics`. Astroscrappy is not a `sunkit_image` subroutine and can be\n+installed seperately using `pip` or `conda`.\n+\"\"\"\n+# sphinx_gallery_thumbnail_number = 2\n+\n+import matplotlib.pyplot as plt\n+\n+from sunpy.map import Map\n+\n+import astroscrappy\n+\n+###############################################################################\n+# First, we will work with the FITS files.\n+# These imports are necessary to download the FITS file based on the instrument.\n+# For more details on how to download a particular LASCO FITS file as a map see\n+# Sunpy's example `downloading_lascoC3.py`\n+from sunpy.net import Fido, attrs as a\n+from sunpy.io.file_tools import read_file\n+\n+###############################################################################\n+# We will also work with `jp2` images. So to download these files we will use\n+# Sunpy's Helioviewer.org api. For more information about the helioviewer api,\n+# see sunpy example `Querying Helioviewer.org with SunPy`.\n+from sunpy.net.helioviewer import HelioviewerClient\n+\n+###############################################################################\n+# In order to download the required FITS file, we use\n+# `Fido <sunpy.net.fido_factory.UnifiedDownloaderFactory>`, a downloader client.\n+# We define two search variables:\n+# a timerange and the instrument.\n+timerange = a.Time(\"2000/11/09 00:26\", \"2000/11/09 00:27\")\n+instrument = a.Instrument(\"LASCO\")\n+detector = a.Detector(\"C2\")\n+result = Fido.search(timerange, instrument)\n+\n+downloaded_files = Fido.fetch(result[0])\n+data, header = read_file(downloaded_files[1])[0]\n+\n+# Add the missing meta information to the header\n+header[\"CUNIT1\"] = \"arcsec\"\n+header[\"CUNIT2\"] = \"arcsec\"\n+\n+###############################################################################\n+# With this fix we can load it into a map and plot the results.\n+lascomap1 = Map(data, header)\n+fig1 = plt.figure()\n+lascomap1.plot()\n+\n+###############################################################################\n+# Now we will call the `astroscrappy.detect_cosmics` to remove the cosmic ray\n+# hits. This algorithm can perform well with both high intensity and low intensity\n+# noise levels in the FTIS file.\n+\n+# The function takes a `numpy.ndarray` as input so we only pass the data part of\n+# the map.\n+mask, clean = astroscrappy.detect_cosmics(lascomap1.data)\n+# This returns two values - `mask` is a boolean array depicting whether their is\n+# a comic ray hit at that pixel, `clean` is the cleaned image after removing those\n+# hits.\n+\n+###############################################################################\n+# We can now plot the cleaned image after making a `sunpy.map.GenericMap`.\n+clean_map1 = Map(clean, lascomap1.meta)\n+\n+fig2 = plt.figure()\n+clean_map1.plot()\n+\n+###############################################################################\n+# The above portion explained how to use `astroscrappy.detect_cosmics` when working\n+# with FITS files. Now, we will see how can we remove cosmic ray hits in a `jp2`\n+# image.\n+\n+# First, we will create a HelioviewerClient\n+hv = HelioviewerClient()\n+\n+# This will download the `jp2` image based on the date of the observation and the\n+# instruments used. This is a `jp2` image with a low level of noise intensity.\n+file = hv.download_jp2(\n+    \"2003/04/16\", observatory=\"SOHO\", instrument=\"LASCO\", measurement=\"C2\", source_id=4\n+)\n+\n+###############################################################################\n+# We can load the downloaded file into a `sunpy.map.GenericMap` and plot the\n+# results.\n+lascomap2 = Map(file)\n+\n+fig3 = plt.figure()\n+lascomap2.plot()\n+\n+################################################################################\n+# Now we will again call the `astroscrappy.detect_cosmics`. It is to be noted that","path":"examples/remove_CR_hits.py","position":97,"original_position":97,"commit_id":"98e1a568ff9b6d2aaf5746448f5718dee2919083","original_commit_id":"98e1a568ff9b6d2aaf5746448f5718dee2919083","user":{"login":"nabobalis","id":1392107,"node_id":"MDQ6VXNlcjEzOTIxMDc=","avatar_url":"https://avatars2.githubusercontent.com/u/1392107?v=4","gravatar_id":"","url":"https://api.github.com/users/nabobalis","html_url":"https://github.com/nabobalis","followers_url":"https://api.github.com/users/nabobalis/followers","following_url":"https://api.github.com/users/nabobalis/following{/other_user}","gists_url":"https://api.github.com/users/nabobalis/gists{/gist_id}","starred_url":"https://api.github.com/users/nabobalis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nabobalis/subscriptions","organizations_url":"https://api.github.com/users/nabobalis/orgs","repos_url":"https://api.github.com/users/nabobalis/repos","events_url":"https://api.github.com/users/nabobalis/events{/privacy}","received_events_url":"https://api.github.com/users/nabobalis/received_events","type":"User","site_admin":false},"body":"```suggestion\r\n# Now we will again call the``astroscrappy.detect_cosmics <https://astroscrappy.readthedocs.io/en/latest/api/astroscrappy.detect_cosmics.html>``__. It is to be noted that\r\n```","created_at":"2019-06-28T16:06:19Z","updated_at":"2019-06-28T16:07:41Z","html_url":"https://github.com/sunpy/sunkit-image/pull/35#discussion_r298657161","pull_request_url":"https://api.github.com/repos/sunpy/sunkit-image/pulls/35","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/sunpy/sunkit-image/pulls/comments/298657161"},"html":{"href":"https://github.com/sunpy/sunkit-image/pull/35#discussion_r298657161"},"pull_request":{"href":"https://api.github.com/repos/sunpy/sunkit-image/pulls/35"}}},"pull_request":{"url":"https://api.github.com/repos/sunpy/sunkit-image/pulls/35","id":292500546,"node_id":"MDExOlB1bGxSZXF1ZXN0MjkyNTAwNTQ2","html_url":"https://github.com/sunpy/sunkit-image/pull/35","diff_url":"https://github.com/sunpy/sunkit-image/pull/35.diff","patch_url":"https://github.com/sunpy/sunkit-image/pull/35.patch","issue_url":"https://api.github.com/repos/sunpy/sunkit-image/issues/35","number":35,"state":"open","locked":false,"title":"Added the example to remove cosmic ray hits","user":{"login":"vatch123","id":39871718,"node_id":"MDQ6VXNlcjM5ODcxNzE4","avatar_url":"https://avatars0.githubusercontent.com/u/39871718?v=4","gravatar_id":"","url":"https://api.github.com/users/vatch123","html_url":"https://github.com/vatch123","followers_url":"https://api.github.com/users/vatch123/followers","following_url":"https://api.github.com/users/vatch123/following{/other_user}","gists_url":"https://api.github.com/users/vatch123/gists{/gist_id}","starred_url":"https://api.github.com/users/vatch123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vatch123/subscriptions","organizations_url":"https://api.github.com/users/vatch123/orgs","repos_url":"https://api.github.com/users/vatch123/repos","events_url":"https://api.github.com/users/vatch123/events{/privacy}","received_events_url":"https://api.github.com/users/vatch123/received_events","type":"User","site_admin":false},"body":"<!-- This comments are hidden when 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