{"action":"opened","issue":{"url":"https://api.github.com/repos/Discngine/fpocket/issues/24","repository_url":"https://api.github.com/repos/Discngine/fpocket","labels_url":"https://api.github.com/repos/Discngine/fpocket/issues/24/labels{/name}","comments_url":"https://api.github.com/repos/Discngine/fpocket/issues/24/comments","events_url":"https://api.github.com/repos/Discngine/fpocket/issues/24/events","html_url":"https://github.com/Discngine/fpocket/issues/24","id":546521163,"node_id":"MDU6SXNzdWU1NDY1MjExNjM=","number":24,"title":"mdpocket with --pdb_list flag just returns the help page","user":{"login":"JoanGizzio","id":59625288,"node_id":"MDQ6VXNlcjU5NjI1Mjg4","avatar_url":"https://avatars1.githubusercontent.com/u/59625288?v=4","gravatar_id":"","url":"https://api.github.com/users/JoanGizzio","html_url":"https://github.com/JoanGizzio","followers_url":"https://api.github.com/users/JoanGizzio/followers","following_url":"https://api.github.com/users/JoanGizzio/following{/other_user}","gists_url":"https://api.github.com/users/JoanGizzio/gists{/gist_id}","starred_url":"https://api.github.com/users/JoanGizzio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JoanGizzio/subscriptions","organizations_url":"https://api.github.com/users/JoanGizzio/orgs","repos_url":"https://api.github.com/users/JoanGizzio/repos","events_url":"https://api.github.com/users/JoanGizzio/events{/privacy}","received_events_url":"https://api.github.com/users/JoanGizzio/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2020-01-07T21:38:28Z","updated_at":"2020-01-07T21:38:28Z","closed_at":null,"author_association":"NONE","body":"Hi!\r\nI'm trying to run the pocket exploration with mdpocket (fpocket3.0), on a set of superimposed PDB files. \r\n\r\nI have a text file, pdblistfile.txt, which is a list of PDB file paths that I generated using createMDPocketInputFile.py\r\n\r\nmdpocket --pdb_list pdblistfile.txt\r\njust gives the help page as if I had used the flag -h, and when I try the old command;\r\nmdpocket -L pdblistfile.txt\r\nI get the same thing\r\n\r\nAny thoughts? These PDB files are literally from the PDB, superimposed using Theseus, so I don't have an MD trajectory to try pocket exploration on instead"}}
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