{"action":"reopened","issue":{"url":"https://api.github.com/repos/iqbal-lab-org/minos/issues/78","repository_url":"https://api.github.com/repos/iqbal-lab-org/minos","labels_url":"https://api.github.com/repos/iqbal-lab-org/minos/issues/78/labels{/name}","comments_url":"https://api.github.com/repos/iqbal-lab-org/minos/issues/78/comments","events_url":"https://api.github.com/repos/iqbal-lab-org/minos/issues/78/events","html_url":"https://github.com/iqbal-lab-org/minos/issues/78","id":458548347,"node_id":"MDU6SXNzdWU0NTg1NDgzNDc=","number":78,"title":"Null genotypes missing GT_CONF_PERCENTILE value","user":{"login":"mbhall88","id":20403931,"node_id":"MDQ6VXNlcjIwNDAzOTMx","avatar_url":"https://avatars3.githubusercontent.com/u/20403931?v=4","gravatar_id":"","url":"https://api.github.com/users/mbhall88","html_url":"https://github.com/mbhall88","followers_url":"https://api.github.com/users/mbhall88/followers","following_url":"https://api.github.com/users/mbhall88/following{/other_user}","gists_url":"https://api.github.com/users/mbhall88/gists{/gist_id}","starred_url":"https://api.github.com/users/mbhall88/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mbhall88/subscriptions","organizations_url":"https://api.github.com/users/mbhall88/orgs","repos_url":"https://api.github.com/users/mbhall88/repos","events_url":"https://api.github.com/users/mbhall88/events{/privacy}","received_events_url":"https://api.github.com/users/mbhall88/received_events","type":"User","site_admin":false},"labels":[{"id":816400599,"node_id":"MDU6TGFiZWw4MTY0MDA1OTk=","url":"https://api.github.com/repos/iqbal-lab-org/minos/labels/bug","name":"bug","color":"d73a4a","default":true}],"state":"open","locked":false,"assignee":{"login":"bricoletc","id":22122595,"node_id":"MDQ6VXNlcjIyMTIyNTk1","avatar_url":"https://avatars0.githubusercontent.com/u/22122595?v=4","gravatar_id":"","url":"https://api.github.com/users/bricoletc","html_url":"https://github.com/bricoletc","followers_url":"https://api.github.com/users/bricoletc/followers","following_url":"https://api.github.com/users/bricoletc/following{/other_user}","gists_url":"https://api.github.com/users/bricoletc/gists{/gist_id}","starred_url":"https://api.github.com/users/bricoletc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bricoletc/subscriptions","organizations_url":"https://api.github.com/users/bricoletc/orgs","repos_url":"https://api.github.com/users/bricoletc/repos","events_url":"https://api.github.com/users/bricoletc/events{/privacy}","received_events_url":"https://api.github.com/users/bricoletc/received_events","type":"User","site_admin":false},"assignees":[{"login":"bricoletc","id":22122595,"node_id":"MDQ6VXNlcjIyMTIyNTk1","avatar_url":"https://avatars0.githubusercontent.com/u/22122595?v=4","gravatar_id":"","url":"https://api.github.com/users/bricoletc","html_url":"https://github.com/bricoletc","followers_url":"https://api.github.com/users/bricoletc/followers","following_url":"https://api.github.com/users/bricoletc/following{/other_user}","gists_url":"https://api.github.com/users/bricoletc/gists{/gist_id}","starred_url":"https://api.github.com/users/bricoletc/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bricoletc/subscriptions","organizations_url":"https://api.github.com/users/bricoletc/orgs","repos_url":"https://api.github.com/users/bricoletc/repos","events_url":"https://api.github.com/users/bricoletc/events{/privacy}","received_events_url":"https://api.github.com/users/bricoletc/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2019-06-20T09:39:02Z","updated_at":"2019-07-18T15:13:50Z","closed_at":null,"author_association":"NONE","body":"I have a multisample VCF from minos v0.5.1 where some samples are missing the GT_CONF_PERCENTILE field. It seems to only be on samples with a null genotype (`./.`) An example of the INFO string \r\n\r\n```\r\nGT:DP:COV:GT_CONF:GT_CONF_PERCENTILE:STATUS\r\n```\r\nand an example incorrect sample entry\r\n```\r\n./.:0:0,0:0.0:FAIL\r\n```"}}
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