{"action":"created","issue":{"url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/issues/15","repository_url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA","labels_url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/issues/15/comments","events_url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/issues/15/events","html_url":"https://github.com/OstfriesenBI/PredmiRNA/issues/15","id":381621824,"node_id":"MDU6SXNzdWUzODE2MjE4MjQ=","number":15,"title":"Feature calculation: Stacking triplets","user":{"login":"Finesim97","id":1181653,"node_id":"MDQ6VXNlcjExODE2NTM=","avatar_url":"https://avatars2.githubusercontent.com/u/1181653?v=4","gravatar_id":"","url":"https://api.github.com/users/Finesim97","html_url":"https://github.com/Finesim97","followers_url":"https://api.github.com/users/Finesim97/followers","following_url":"https://api.github.com/users/Finesim97/following{/other_user}","gists_url":"https://api.github.com/users/Finesim97/gists{/gist_id}","starred_url":"https://api.github.com/users/Finesim97/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Finesim97/subscriptions","organizations_url":"https://api.github.com/users/Finesim97/orgs","repos_url":"https://api.github.com/users/Finesim97/repos","events_url":"https://api.github.com/users/Finesim97/events{/privacy}","received_events_url":"https://api.github.com/users/Finesim97/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"mariusrueve","id":44000950,"node_id":"MDQ6VXNlcjQ0MDAwOTUw","avatar_url":"https://avatars1.githubusercontent.com/u/44000950?v=4","gravatar_id":"","url":"https://api.github.com/users/mariusrueve","html_url":"https://github.com/mariusrueve","followers_url":"https://api.github.com/users/mariusrueve/followers","following_url":"https://api.github.com/users/mariusrueve/following{/other_user}","gists_url":"https://api.github.com/users/mariusrueve/gists{/gist_id}","starred_url":"https://api.github.com/users/mariusrueve/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mariusrueve/subscriptions","organizations_url":"https://api.github.com/users/mariusrueve/orgs","repos_url":"https://api.github.com/users/mariusrueve/repos","events_url":"https://api.github.com/users/mariusrueve/events{/privacy}","received_events_url":"https://api.github.com/users/mariusrueve/received_events","type":"User","site_admin":false},"assignees":[{"login":"mariusrueve","id":44000950,"node_id":"MDQ6VXNlcjQ0MDAwOTUw","avatar_url":"https://avatars1.githubusercontent.com/u/44000950?v=4","gravatar_id":"","url":"https://api.github.com/users/mariusrueve","html_url":"https://github.com/mariusrueve","followers_url":"https://api.github.com/users/mariusrueve/followers","following_url":"https://api.github.com/users/mariusrueve/following{/other_user}","gists_url":"https://api.github.com/users/mariusrueve/gists{/gist_id}","starred_url":"https://api.github.com/users/mariusrueve/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mariusrueve/subscriptions","organizations_url":"https://api.github.com/users/mariusrueve/orgs","repos_url":"https://api.github.com/users/mariusrueve/repos","events_url":"https://api.github.com/users/mariusrueve/events{/privacy}","received_events_url":"https://api.github.com/users/mariusrueve/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/milestones/2","html_url":"https://github.com/OstfriesenBI/PredmiRNA/milestone/2","labels_url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/milestones/2/labels","id":3802982,"node_id":"MDk6TWlsZXN0b25lMzgwMjk4Mg==","number":2,"title":"Phase 1: Feature calculation","description":"Every feature we want to calculate is included in the workflow, maybe some visualization","creator":{"login":"Finesim97","id":1181653,"node_id":"MDQ6VXNlcjExODE2NTM=","avatar_url":"https://avatars2.githubusercontent.com/u/1181653?v=4","gravatar_id":"","url":"https://api.github.com/users/Finesim97","html_url":"https://github.com/Finesim97","followers_url":"https://api.github.com/users/Finesim97/followers","following_url":"https://api.github.com/users/Finesim97/following{/other_user}","gists_url":"https://api.github.com/users/Finesim97/gists{/gist_id}","starred_url":"https://api.github.com/users/Finesim97/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Finesim97/subscriptions","organizations_url":"https://api.github.com/users/Finesim97/orgs","repos_url":"https://api.github.com/users/Finesim97/repos","events_url":"https://api.github.com/users/Finesim97/events{/privacy}","received_events_url":"https://api.github.com/users/Finesim97/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":12,"state":"open","created_at":"2018-11-07T11:18:51Z","updated_at":"2019-01-31T19:14:48Z","due_on":"2018-12-11T08:00:00Z","closed_at":null},"comments":0,"created_at":"2018-11-16T14:29:01Z","updated_at":"2019-02-13T08:55:36Z","closed_at":null,"author_association":"COLLABORATOR","body":"R/Python function:\r\nInput: csv file with the sequences and the secondary structure:\r\n```\r\n\"comment\",\"sequence\",\"realmiRNA\",\"secstructure\",\r\n\"mmu-mir-380 MI0000797 Mus musculus miR-380 stem-loop\",\"AAGAUG\",1,\"...(..\"\r\n\"mmu-mir-381 MI0000798 Mus musculus miR-381 stem-loop\",\"AAUUC\",1,\"...(..\"\r\n```\r\nSource paper:\r\nClassification of real and pseudo microRNA precursors using local structure-sequence features and support vector machine\r\nSee figure 1 and 2. \r\n\r\nThe best features seem to be the A(((, U(((, G((( and C((( triplets, but the calculation of all 32 variants would be nice."},"comment":{"url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/issues/comments/463113501","html_url":"https://github.com/OstfriesenBI/PredmiRNA/issues/15#issuecomment-463113501","issue_url":"https://api.github.com/repos/OstfriesenBI/PredmiRNA/issues/15","id":463113501,"node_id":"MDEyOklzc3VlQ29tbWVudDQ2MzExMzUwMQ==","user":{"login":"mariusrueve","id":44000950,"node_id":"MDQ6VXNlcjQ0MDAwOTUw","avatar_url":"https://avatars1.githubusercontent.com/u/44000950?v=4","gravatar_id":"","url":"https://api.github.com/users/mariusrueve","html_url":"https://github.com/mariusrueve","followers_url":"https://api.github.com/users/mariusrueve/followers","following_url":"https://api.github.com/users/mariusrueve/following{/other_user}","gists_url":"https://api.github.com/users/mariusrueve/gists{/gist_id}","starred_url":"https://api.github.com/users/mariusrueve/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mariusrueve/subscriptions","organizations_url":"https://api.github.com/users/mariusrueve/orgs","repos_url":"https://api.github.com/users/mariusrueve/repos","events_url":"https://api.github.com/users/mariusrueve/events{/privacy}","received_events_url":"https://api.github.com/users/mariusrueve/received_events","type":"User","site_admin":false},"created_at":"2019-02-13T08:55:36Z","updated_at":"2019-02-13T08:55:36Z","author_association":"CONTRIBUTOR","body":"![image](https://user-images.githubusercontent.com/44000950/52699135-5aa5b880-2f75-11e9-9017-a2b11878eeb2.png)\r\n\r\n![image](https://user-images.githubusercontent.com/44000950/52699169-6d1ff200-2f75-11e9-93ed-6bd2576b8eef.png)\r\n"}}
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