{"action":"created","issue":{"url":"https://api.github.com/repos/spacetx/starfish/issues/1096","repository_url":"https://api.github.com/repos/spacetx/starfish","labels_url":"https://api.github.com/repos/spacetx/starfish/issues/1096/labels{/name}","comments_url":"https://api.github.com/repos/spacetx/starfish/issues/1096/comments","events_url":"https://api.github.com/repos/spacetx/starfish/issues/1096/events","html_url":"https://github.com/spacetx/starfish/pull/1096","id":422912103,"node_id":"MDExOlB1bGxSZXF1ZXN0MjYyNTk4NTAx","number":1096,"title":"[WIP] BaristaSeq Notebook","user":{"login":"ambrosejcarr","id":5239152,"node_id":"MDQ6VXNlcjUyMzkxNTI=","avatar_url":"https://avatars1.githubusercontent.com/u/5239152?v=4","gravatar_id":"","url":"https://api.github.com/users/ambrosejcarr","html_url":"https://github.com/ambrosejcarr","followers_url":"https://api.github.com/users/ambrosejcarr/followers","following_url":"https://api.github.com/users/ambrosejcarr/following{/other_user}","gists_url":"https://api.github.com/users/ambrosejcarr/gists{/gist_id}","starred_url":"https://api.github.com/users/ambrosejcarr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ambrosejcarr/subscriptions","organizations_url":"https://api.github.com/users/ambrosejcarr/orgs","repos_url":"https://api.github.com/users/ambrosejcarr/repos","events_url":"https://api.github.com/users/ambrosejcarr/events{/privacy}","received_events_url":"https://api.github.com/users/ambrosejcarr/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2019-03-19T19:26:14Z","updated_at":"2019-03-19T21:03:19Z","closed_at":null,"author_association":"MEMBER","pull_request":{"url":"https://api.github.com/repos/spacetx/starfish/pulls/1096","html_url":"https://github.com/spacetx/starfish/pull/1096","diff_url":"https://github.com/spacetx/starfish/pull/1096.diff","patch_url":"https://github.com/spacetx/starfish/pull/1096.patch"},"body":"- Adds a work-in-progress BaristaSeq notebook that uses the PixelSpotDecoder to identify genes. \r\n\r\nNext steps: \r\n- Check with the Zador lab if these data make sense for them. "},"comment":{"url":"https://api.github.com/repos/spacetx/starfish/issues/comments/474583457","html_url":"https://github.com/spacetx/starfish/pull/1096#issuecomment-474583457","issue_url":"https://api.github.com/repos/spacetx/starfish/issues/1096","id":474583457,"node_id":"MDEyOklzc3VlQ29tbWVudDQ3NDU4MzQ1Nw==","user":{"login":"codecov-io","id":8655789,"node_id":"MDQ6VXNlcjg2NTU3ODk=","avatar_url":"https://avatars0.githubusercontent.com/u/8655789?v=4","gravatar_id":"","url":"https://api.github.com/users/codecov-io","html_url":"https://github.com/codecov-io","followers_url":"https://api.github.com/users/codecov-io/followers","following_url":"https://api.github.com/users/codecov-io/following{/other_user}","gists_url":"https://api.github.com/users/codecov-io/gists{/gist_id}","starred_url":"https://api.github.com/users/codecov-io/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/codecov-io/subscriptions","organizations_url":"https://api.github.com/users/codecov-io/orgs","repos_url":"https://api.github.com/users/codecov-io/repos","events_url":"https://api.github.com/users/codecov-io/events{/privacy}","received_events_url":"https://api.github.com/users/codecov-io/received_events","type":"User","site_admin":false},"created_at":"2019-03-19T21:03:19Z","updated_at":"2019-03-19T21:03:19Z","author_association":"NONE","body":"# [Codecov](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=h1) Report\n> Merging [#1096](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=desc) into [ajc-local-search-blob-detector](https://codecov.io/gh/spacetx/starfish/commit/d4cb865dee6b804b40509124672a942cf6f32e9b?src=pr&el=desc) will **increase** coverage by `1.9%`.\n> The diff coverage is `n/a`.\n\n[![Impacted file tree graph](https://codecov.io/gh/spacetx/starfish/pull/1096/graphs/tree.svg?width=650&token=kliQHejt6T&height=150&src=pr)](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=tree)\n\n```diff\n@@                        Coverage Diff                        @@\n##           ajc-local-search-blob-detector    #1096     +/-   ##\n=================================================================\n+ Coverage                           88.75%   90.66%   +1.9%     \n=================================================================\n  Files                                 176      166     -10     \n  Lines                                7249     6407    -842     \n=================================================================\n- Hits                                 6434     5809    -625     \n+ Misses                                815      598    -217\n```\n\n\n| [Impacted Files](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=tree) | Coverage Δ | |\n|---|---|---|\n| [starfish/imagestack/parser/\\_tiledata.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvaW1hZ2VzdGFjay9wYXJzZXIvX3RpbGVkYXRhLnB5) | `68.75% <0%> (-6.81%)` | :arrow_down: |\n| [starfish/experiment/builder/defaultproviders.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvZXhwZXJpbWVudC9idWlsZGVyL2RlZmF1bHRwcm92aWRlcnMucHk=) | `95.12% <0%> (-1.04%)` | :arrow_down: |\n| [starfish/starfish.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3RhcmZpc2gucHk=) | `93.87% <0%> (-0.13%)` | :arrow_down: |\n| [starfish/codebook/codebook.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvY29kZWJvb2svY29kZWJvb2sucHk=) | `96.66% <0%> (-0.05%)` | :arrow_down: |\n| [starfish/spacetx\\_format/util.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3BhY2V0eF9mb3JtYXQvdXRpbC5weQ==) | | |\n| [starfish/spacetx\\_format/test\\_field\\_of\\_view.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3BhY2V0eF9mb3JtYXQvdGVzdF9maWVsZF9vZl92aWV3LnB5) | | |\n| [starfish/spacetx\\_format/test\\_fov\\_manifest.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3BhY2V0eF9mb3JtYXQvdGVzdF9mb3ZfbWFuaWZlc3QucHk=) | | |\n| [starfish/spacetx\\_format/test\\_codebook.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3BhY2V0eF9mb3JtYXQvdGVzdF9jb2RlYm9vay5weQ==) | | |\n| [starfish/spacetx\\_format/test\\_experiment.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3BhY2V0eF9mb3JtYXQvdGVzdF9leHBlcmltZW50LnB5) | | |\n| [starfish/spacetx\\_format/test\\_fuzz.py](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree#diff-c3RhcmZpc2gvc3BhY2V0eF9mb3JtYXQvdGVzdF9mdXp6LnB5) | | |\n| ... and [8 more](https://codecov.io/gh/spacetx/starfish/pull/1096/diff?src=pr&el=tree-more) | |\n\n------\n\n[Continue to review full report at Codecov](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=continue).\n> **Legend** - [Click here to learn more](https://docs.codecov.io/docs/codecov-delta)\n> `Δ = absolute <relative> (impact)`, `ø = not affected`, `? = missing data`\n> Powered by [Codecov](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=footer). Last update [d4cb865...8c7f7f5](https://codecov.io/gh/spacetx/starfish/pull/1096?src=pr&el=lastupdated). Read the [comment docs](https://docs.codecov.io/docs/pull-request-comments).\n"}}
{"actor":{"display_login":"codecov-io"}}