{"action":"opened","issue":{"url":"https://api.github.com/repos/ElucidataInc/ElMaven/issues/1176","repository_url":"https://api.github.com/repos/ElucidataInc/ElMaven","labels_url":"https://api.github.com/repos/ElucidataInc/ElMaven/issues/1176/labels{/name}","comments_url":"https://api.github.com/repos/ElucidataInc/ElMaven/issues/1176/comments","events_url":"https://api.github.com/repos/ElucidataInc/ElMaven/issues/1176/events","html_url":"https://github.com/ElucidataInc/ElMaven/issues/1176","id":530905708,"node_id":"MDU6SXNzdWU1MzA5MDU3MDg=","number":1176,"title":"Retention time for Bruker Files is displayed in EIC in seconds instead of minutes.","user":{"login":"shefalilathwal","id":27472328,"node_id":"MDQ6VXNlcjI3NDcyMzI4","avatar_url":"https://avatars1.githubusercontent.com/u/27472328?v=4","gravatar_id":"","url":"https://api.github.com/users/shefalilathwal","html_url":"https://github.com/shefalilathwal","followers_url":"https://api.github.com/users/shefalilathwal/followers","following_url":"https://api.github.com/users/shefalilathwal/following{/other_user}","gists_url":"https://api.github.com/users/shefalilathwal/gists{/gist_id}","starred_url":"https://api.github.com/users/shefalilathwal/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/shefalilathwal/subscriptions","organizations_url":"https://api.github.com/users/shefalilathwal/orgs","repos_url":"https://api.github.com/users/shefalilathwal/repos","events_url":"https://api.github.com/users/shefalilathwal/events{/privacy}","received_events_url":"https://api.github.com/users/shefalilathwal/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2019-12-02T05:46:39Z","updated_at":"2019-12-02T05:46:39Z","closed_at":null,"author_association":"COLLABORATOR","body":"I have files from a Bruker Instrument. I converted them to .mzXML format using MSconvert. The file conversion happens correctly and the files are read by EL-MAVEN. However, the retention time axis appears in seconds instead of minutes. This issue is creating problems because downstream in PollyPhi (since the PollyPhi app displays a fixed rt window around the peaks assuming that the rt is in minutes. So for these files, the peak appears very zoomed in and looks like noise. Additionally, for targeted analysis, the retention time reported for metabolites is in minutes, so thinking in seconds is fairly non-intuitive during usage.\r\n\r\nLink to the files: shared over email."}}
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