{"action":"created","issue":{"url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/issues/2396","repository_url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox","labels_url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/issues/2396/labels{/name}","comments_url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/issues/2396/comments","events_url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/issues/2396/events","html_url":"https://github.com/neuropoly/spinalcordtoolbox/pull/2396","id":477884968,"node_id":"MDExOlB1bGxSZXF1ZXN0MzA1MTE1NTAw","number":2396,"title":"Fixed wrong morphometric measures with anisotropic in-plane resolution","user":{"login":"jcohenadad","id":2482071,"node_id":"MDQ6VXNlcjI0ODIwNzE=","avatar_url":"https://avatars1.githubusercontent.com/u/2482071?v=4","gravatar_id":"","url":"https://api.github.com/users/jcohenadad","html_url":"https://github.com/jcohenadad","followers_url":"https://api.github.com/users/jcohenadad/followers","following_url":"https://api.github.com/users/jcohenadad/following{/other_user}","gists_url":"https://api.github.com/users/jcohenadad/gists{/gist_id}","starred_url":"https://api.github.com/users/jcohenadad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jcohenadad/subscriptions","organizations_url":"https://api.github.com/users/jcohenadad/orgs","repos_url":"https://api.github.com/users/jcohenadad/repos","events_url":"https://api.github.com/users/jcohenadad/events{/privacy}","received_events_url":"https://api.github.com/users/jcohenadad/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2019-08-07T12:00:13Z","updated_at":"2019-08-11T12:38:36Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/pulls/2396","html_url":"https://github.com/neuropoly/spinalcordtoolbox/pull/2396","diff_url":"https://github.com/neuropoly/spinalcordtoolbox/pull/2396.diff","patch_url":"https://github.com/neuropoly/spinalcordtoolbox/pull/2396.patch"},"body":"If axial in-plane resolution is anisotropic, some shape morphometric measures, such as RL/AP diameter and orientation are wrong. \r\n\r\nThis PR solves it by resampling the data to isotropic resolution (chooses the smallest pixel size between RL and AP dimension for target resolution) before computing shape morphometrics.\r\n\r\nAlso see: http://forum.spinalcordmri.org/t/sct-process-segmentation-is-mixing-up-diameter-rl-and-diameter-ap/135/3"},"comment":{"url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/issues/comments/520225092","html_url":"https://github.com/neuropoly/spinalcordtoolbox/pull/2396#issuecomment-520225092","issue_url":"https://api.github.com/repos/neuropoly/spinalcordtoolbox/issues/2396","id":520225092,"node_id":"MDEyOklzc3VlQ29tbWVudDUyMDIyNTA5Mg==","user":{"login":"gmotzespina","id":9021886,"node_id":"MDQ6VXNlcjkwMjE4ODY=","avatar_url":"https://avatars0.githubusercontent.com/u/9021886?v=4","gravatar_id":"","url":"https://api.github.com/users/gmotzespina","html_url":"https://github.com/gmotzespina","followers_url":"https://api.github.com/users/gmotzespina/followers","following_url":"https://api.github.com/users/gmotzespina/following{/other_user}","gists_url":"https://api.github.com/users/gmotzespina/gists{/gist_id}","starred_url":"https://api.github.com/users/gmotzespina/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gmotzespina/subscriptions","organizations_url":"https://api.github.com/users/gmotzespina/orgs","repos_url":"https://api.github.com/users/gmotzespina/repos","events_url":"https://api.github.com/users/gmotzespina/events{/privacy}","received_events_url":"https://api.github.com/users/gmotzespina/received_events","type":"User","site_admin":false},"created_at":"2019-08-11T12:38:36Z","updated_at":"2019-08-11T12:38:36Z","author_association":"COLLABORATOR","body":"@jcohenadad should we get this merged? "}}
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