{"action":"opened","issue":{"url":"https://api.github.com/repos/simonhmartin/genomics_general/issues/25","repository_url":"https://api.github.com/repos/simonhmartin/genomics_general","labels_url":"https://api.github.com/repos/simonhmartin/genomics_general/issues/25/labels{/name}","comments_url":"https://api.github.com/repos/simonhmartin/genomics_general/issues/25/comments","events_url":"https://api.github.com/repos/simonhmartin/genomics_general/issues/25/events","html_url":"https://github.com/simonhmartin/genomics_general/issues/25","id":524086104,"node_id":"MDU6SXNzdWU1MjQwODYxMDQ=","number":25,"title":"Extremely high fd output with ABBA-BABA script","user":{"login":"BioGeorge","id":42829875,"node_id":"MDQ6VXNlcjQyODI5ODc1","avatar_url":"https://avatars0.githubusercontent.com/u/42829875?v=4","gravatar_id":"","url":"https://api.github.com/users/BioGeorge","html_url":"https://github.com/BioGeorge","followers_url":"https://api.github.com/users/BioGeorge/followers","following_url":"https://api.github.com/users/BioGeorge/following{/other_user}","gists_url":"https://api.github.com/users/BioGeorge/gists{/gist_id}","starred_url":"https://api.github.com/users/BioGeorge/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BioGeorge/subscriptions","organizations_url":"https://api.github.com/users/BioGeorge/orgs","repos_url":"https://api.github.com/users/BioGeorge/repos","events_url":"https://api.github.com/users/BioGeorge/events{/privacy}","received_events_url":"https://api.github.com/users/BioGeorge/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2019-11-18T01:31:00Z","updated_at":"2019-11-18T01:31:00Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\nWhen using ABBABABAwindows.py to calculate introgression between groups, I come across such a strange value as the figure shows.\r\n![image](https://user-images.githubusercontent.com/42829875/69017868-74809a00-09e4-11ea-9e6c-d4e85d98d35a.png)\r\n\r\nI know little about the ABBA-BABA statistics. But I've read the cited reference and learned about that the fd statitic will be underestimated compared to the D statistic. I wonder how did this high value happen? Is the value right?\r\n\r\nThe command I used is shown as below.\r\n`python2.7 ABBABABAwindows.py -g Selected.gono -f haplo -o ABBABABAoutput.csv -w 50000 -P1 Pop1 -P2 Pop2 -P3 Pop3 -O OG -T 10 --minData0.5 --popsFile Poplist --writeFailedWindows --haploid Q,W,E,R,T,Y,U,I,O,P,A,S,F,G,J,H`\r\n\r\nThanks."}}
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