{"action":"created","issue":{"url":"https://api.github.com/repos/veg/hyphy/issues/870","repository_url":"https://api.github.com/repos/veg/hyphy","labels_url":"https://api.github.com/repos/veg/hyphy/issues/870/labels{/name}","comments_url":"https://api.github.com/repos/veg/hyphy/issues/870/comments","events_url":"https://api.github.com/repos/veg/hyphy/issues/870/events","html_url":"https://github.com/veg/hyphy/issues/870","id":387357647,"node_id":"MDU6SXNzdWUzODczNTc2NDc=","number":870,"title":"aBS-REL crashes with error ","user":{"login":"NatJWalker-Hale","id":34058664,"node_id":"MDQ6VXNlcjM0MDU4NjY0","avatar_url":"https://avatars3.githubusercontent.com/u/34058664?v=4","gravatar_id":"","url":"https://api.github.com/users/NatJWalker-Hale","html_url":"https://github.com/NatJWalker-Hale","followers_url":"https://api.github.com/users/NatJWalker-Hale/followers","following_url":"https://api.github.com/users/NatJWalker-Hale/following{/other_user}","gists_url":"https://api.github.com/users/NatJWalker-Hale/gists{/gist_id}","starred_url":"https://api.github.com/users/NatJWalker-Hale/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NatJWalker-Hale/subscriptions","organizations_url":"https://api.github.com/users/NatJWalker-Hale/orgs","repos_url":"https://api.github.com/users/NatJWalker-Hale/repos","events_url":"https://api.github.com/users/NatJWalker-Hale/events{/privacy}","received_events_url":"https://api.github.com/users/NatJWalker-Hale/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"spond","id":1018513,"node_id":"MDQ6VXNlcjEwMTg1MTM=","avatar_url":"https://avatars3.githubusercontent.com/u/1018513?v=4","gravatar_id":"","url":"https://api.github.com/users/spond","html_url":"https://github.com/spond","followers_url":"https://api.github.com/users/spond/followers","following_url":"https://api.github.com/users/spond/following{/other_user}","gists_url":"https://api.github.com/users/spond/gists{/gist_id}","starred_url":"https://api.github.com/users/spond/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spond/subscriptions","organizations_url":"https://api.github.com/users/spond/orgs","repos_url":"https://api.github.com/users/spond/repos","events_url":"https://api.github.com/users/spond/events{/privacy}","received_events_url":"https://api.github.com/users/spond/received_events","type":"User","site_admin":false},"assignees":[{"login":"spond","id":1018513,"node_id":"MDQ6VXNlcjEwMTg1MTM=","avatar_url":"https://avatars3.githubusercontent.com/u/1018513?v=4","gravatar_id":"","url":"https://api.github.com/users/spond","html_url":"https://github.com/spond","followers_url":"https://api.github.com/users/spond/followers","following_url":"https://api.github.com/users/spond/following{/other_user}","gists_url":"https://api.github.com/users/spond/gists{/gist_id}","starred_url":"https://api.github.com/users/spond/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spond/subscriptions","organizations_url":"https://api.github.com/users/spond/orgs","repos_url":"https://api.github.com/users/spond/repos","events_url":"https://api.github.com/users/spond/events{/privacy}","received_events_url":"https://api.github.com/users/spond/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-12-04T16:01:32Z","updated_at":"2018-12-07T17:07:53Z","closed_at":null,"author_association":"NONE","body":"Hi guys, \r\n\r\nI am trying to run an aBS-REL analysis locally with HYPHYMP v2.3.14.20181101beta. It gets quite a way through the run but then crashed with the following error: \r\n\r\n`Error:\r\nInternal error, dumping the offending likelihood function to /tmp/hyphy.dumpInternal error in _LikelihoodFunction::ConjugateGradientDescent. The function evaluated at current parameter values [-161376] does not match the last recorded LF maximum [-161375]`\r\n\r\nWould you happen to know what caused this and is there any way to correct it?\r\n"},"comment":{"url":"https://api.github.com/repos/veg/hyphy/issues/comments/445299223","html_url":"https://github.com/veg/hyphy/issues/870#issuecomment-445299223","issue_url":"https://api.github.com/repos/veg/hyphy/issues/870","id":445299223,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0NTI5OTIyMw==","user":{"login":"spond","id":1018513,"node_id":"MDQ6VXNlcjEwMTg1MTM=","avatar_url":"https://avatars3.githubusercontent.com/u/1018513?v=4","gravatar_id":"","url":"https://api.github.com/users/spond","html_url":"https://github.com/spond","followers_url":"https://api.github.com/users/spond/followers","following_url":"https://api.github.com/users/spond/following{/other_user}","gists_url":"https://api.github.com/users/spond/gists{/gist_id}","starred_url":"https://api.github.com/users/spond/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spond/subscriptions","organizations_url":"https://api.github.com/users/spond/orgs","repos_url":"https://api.github.com/users/spond/repos","events_url":"https://api.github.com/users/spond/events{/privacy}","received_events_url":"https://api.github.com/users/spond/received_events","type":"User","site_admin":false},"created_at":"2018-12-07T17:07:53Z","updated_at":"2018-12-07T17:07:53Z","author_association":"MEMBER","body":"Dear @NatJWalker-Hale,\r\n\r\nWould you mind privately sharing the alignment/tree files (and analysis settings) with me so that I could try to replicate and address the issue?\r\n\r\nThe error occurs because HyPhy internal consistency diagnostics are showing that something is wrong, but most of the times it is simply a false positive (sometimes, however, these tests to reveal a bug). In any case, an error like this implies that HyPhy encountered a state that should not have occurred, and I need to replicate the error to understand why.\r\n\r\nBest,\r\nSergei\r\n"}}
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