{"action":"created","issue":{"url":"https://api.github.com/repos/Oshlack/STRetch/issues/42","repository_url":"https://api.github.com/repos/Oshlack/STRetch","labels_url":"https://api.github.com/repos/Oshlack/STRetch/issues/42/labels{/name}","comments_url":"https://api.github.com/repos/Oshlack/STRetch/issues/42/comments","events_url":"https://api.github.com/repos/Oshlack/STRetch/issues/42/events","html_url":"https://github.com/Oshlack/STRetch/issues/42","id":383312334,"node_id":"MDU6SXNzdWUzODMzMTIzMzQ=","number":42,"title":"Running with Exome Bam","user":{"login":"npatel22526","id":16415435,"node_id":"MDQ6VXNlcjE2NDE1NDM1","avatar_url":"https://avatars0.githubusercontent.com/u/16415435?v=4","gravatar_id":"","url":"https://api.github.com/users/npatel22526","html_url":"https://github.com/npatel22526","followers_url":"https://api.github.com/users/npatel22526/followers","following_url":"https://api.github.com/users/npatel22526/following{/other_user}","gists_url":"https://api.github.com/users/npatel22526/gists{/gist_id}","starred_url":"https://api.github.com/users/npatel22526/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/npatel22526/subscriptions","organizations_url":"https://api.github.com/users/npatel22526/orgs","repos_url":"https://api.github.com/users/npatel22526/repos","events_url":"https://api.github.com/users/npatel22526/events{/privacy}","received_events_url":"https://api.github.com/users/npatel22526/received_events","type":"User","site_admin":false},"labels":[{"id":1136127876,"node_id":"MDU6TGFiZWwxMTM2MTI3ODc2","url":"https://api.github.com/repos/Oshlack/STRetch/labels/feature","name":"feature","color":"b5a0e8","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":13,"created_at":"2018-11-21T22:23:52Z","updated_at":"2018-11-30T22:31:10Z","closed_at":null,"author_association":"NONE","body":"Hello, \r\n\r\nIn the guide there is an example for running WGS samples from BAM , but for exome it shows example with Fastq files only. The same is true pipelines available after installation. \r\n\r\nWould it be OK to edit the \"STRetch_exome_pipeline.groovy\" to run with the exome ? or it would generate unexpected results. \r\n\r\nThanks, \r\nNick "},"comment":{"url":"https://api.github.com/repos/Oshlack/STRetch/issues/comments/443359426","html_url":"https://github.com/Oshlack/STRetch/issues/42#issuecomment-443359426","issue_url":"https://api.github.com/repos/Oshlack/STRetch/issues/42","id":443359426,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0MzM1OTQyNg==","user":{"login":"hdashnow","id":3794821,"node_id":"MDQ6VXNlcjM3OTQ4MjE=","avatar_url":"https://avatars2.githubusercontent.com/u/3794821?v=4","gravatar_id":"","url":"https://api.github.com/users/hdashnow","html_url":"https://github.com/hdashnow","followers_url":"https://api.github.com/users/hdashnow/followers","following_url":"https://api.github.com/users/hdashnow/following{/other_user}","gists_url":"https://api.github.com/users/hdashnow/gists{/gist_id}","starred_url":"https://api.github.com/users/hdashnow/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hdashnow/subscriptions","organizations_url":"https://api.github.com/users/hdashnow/orgs","repos_url":"https://api.github.com/users/hdashnow/repos","events_url":"https://api.github.com/users/hdashnow/events{/privacy}","received_events_url":"https://api.github.com/users/hdashnow/received_events","type":"User","site_admin":false},"created_at":"2018-11-30T22:31:10Z","updated_at":"2018-11-30T22:31:10Z","author_association":"COLLABORATOR","body":"Could you please try without the -m and -n flags?"}}
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