{"action":"created","issue":{"url":"https://api.github.com/repos/ReproNim/ohbm2018-training/issues/15","repository_url":"https://api.github.com/repos/ReproNim/ohbm2018-training","labels_url":"https://api.github.com/repos/ReproNim/ohbm2018-training/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/ReproNim/ohbm2018-training/issues/15/comments","events_url":"https://api.github.com/repos/ReproNim/ohbm2018-training/issues/15/events","html_url":"https://github.com/ReproNim/ohbm2018-training/issues/15","id":329437360,"node_id":"MDU6SXNzdWUzMjk0MzczNjA=","number":15,"title":"VirtualBox list","user":{"login":"satra","id":184063,"node_id":"MDQ6VXNlcjE4NDA2Mw==","avatar_url":"https://avatars2.githubusercontent.com/u/184063?v=4","gravatar_id":"","url":"https://api.github.com/users/satra","html_url":"https://github.com/satra","followers_url":"https://api.github.com/users/satra/followers","following_url":"https://api.github.com/users/satra/following{/other_user}","gists_url":"https://api.github.com/users/satra/gists{/gist_id}","starred_url":"https://api.github.com/users/satra/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/satra/subscriptions","organizations_url":"https://api.github.com/users/satra/orgs","repos_url":"https://api.github.com/users/satra/repos","events_url":"https://api.github.com/users/satra/events{/privacy}","received_events_url":"https://api.github.com/users/satra/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":50,"created_at":"2018-06-05T12:38:38Z","updated_at":"2018-06-12T00:56:40Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"@mjtravers  - replacing issue #12 - just check off all the things you already have.\r\n\r\n#### Core VM\r\n- [x] memory 2G (needs to be tested)\r\n- [x] cores 2\r\n- [x] xenial LTS desktop\r\n   - [x] neurodebian sources\r\n- [x] autologin full-screen\r\n- [x] latest guest additions\r\n\r\n####  general (see each section for additional local installs (listed under install)\r\n  - [x] git\r\n  - [x] git-annex-standalone\r\n  - [x] editors: vim emacs pico nano gedit\r\n  - [x] docker 18.03.1-ce\r\n  - [x] Singularity 2.5.1-dist\r\n  - [x] build-essential\r\n  - [x] wget curl\r\n\r\n#### FAIR Data - BIDS datasets\r\n- instructions from here: https://github.com/albertcrowley/nidm-training\r\n  - install\r\n    - [x] graphviz\r\n- miniconda (environment: section1)\r\n  - conda \r\n    - [x] python=3 pytest graphviz pandas rdflib requests fuzzywuzzy pygithub python-levenshtein\r\n  - pip \r\n    - [x] owlready2 pybids duecredit https://github.com/incf-nidash/PyNIDM/archive/a90b3f47dbdafb9504f13a3a8d85fdff931cc45c.zip \r\n    - [x] git clone https://github.com/incf-nidash/PyNIDM.git\r\n\r\n#### Computational basis\r\n- [x] Datalad @yarikoptic - let matt know when this is released\r\n- pip:\r\n  - [x] https://github.com/datalad/datalad-container/archive/master.zip\r\n  - [x] https://github.com/datalad/datalad-neuroimaging/archive/master.zip\r\n\r\n#### Neuroimaging Workflows\r\n  - containers\r\n    - [x] neurodocker (`docker pull kaczmarj/neurodocker:master`) - will ask @kaczmarj to cut a new release\r\n  - [x] fsl heudiconv (build using instructions below)\r\n  - [x] Reprozip/Reprounzip (installed via miniconda above into environment: section3)\r\n\r\n#### Statistics for reproducibility\r\n   - [x] requirements installed into separate environment (environment: section4)\r\n\r\n#### Others\r\n- [ ] Vagrantfile\r\n- [ ] All the neurodocker scripts for containers\r\n- [ ] niceman into containers?? (@yarikoptic @mjtravers - should this be done?)\r\n- [ ] instructions for building the singularity containers (testing these now - will add soon)\r\n"},"comment":{"url":"https://api.github.com/repos/ReproNim/ohbm2018-training/issues/comments/396431932","html_url":"https://github.com/ReproNim/ohbm2018-training/issues/15#issuecomment-396431932","issue_url":"https://api.github.com/repos/ReproNim/ohbm2018-training/issues/15","id":396431932,"node_id":"MDEyOklzc3VlQ29tbWVudDM5NjQzMTkzMg==","user":{"login":"jbpoline","id":275048,"node_id":"MDQ6VXNlcjI3NTA0OA==","avatar_url":"https://avatars0.githubusercontent.com/u/275048?v=4","gravatar_id":"","url":"https://api.github.com/users/jbpoline","html_url":"https://github.com/jbpoline","followers_url":"https://api.github.com/users/jbpoline/followers","following_url":"https://api.github.com/users/jbpoline/following{/other_user}","gists_url":"https://api.github.com/users/jbpoline/gists{/gist_id}","starred_url":"https://api.github.com/users/jbpoline/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jbpoline/subscriptions","organizations_url":"https://api.github.com/users/jbpoline/orgs","repos_url":"https://api.github.com/users/jbpoline/repos","events_url":"https://api.github.com/users/jbpoline/events{/privacy}","received_events_url":"https://api.github.com/users/jbpoline/received_events","type":"User","site_admin":false},"created_at":"2018-06-12T00:56:40Z","updated_at":"2018-06-12T00:56:40Z","author_association":"CONTRIBUTOR","body":"@mjtravers  Awesome - thanks !\r\n@cmtgreenwood : let us know if that is fine - best would be to try on the VM - will try on my side"}}
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