{"action":"created","issue":{"url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0/issues/2","repository_url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0","labels_url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0/issues/2/comments","events_url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0/issues/2/events","html_url":"https://github.com/KarchinLab/mhcnuggets-2.0/issues/2","id":333348084,"node_id":"MDU6SXNzdWUzMzMzNDgwODQ=","number":2,"title":"Support for IEDB style of HLA naming?","user":{"login":"malachig","id":856728,"node_id":"MDQ6VXNlcjg1NjcyOA==","avatar_url":"https://avatars3.githubusercontent.com/u/856728?v=4","gravatar_id":"","url":"https://api.github.com/users/malachig","html_url":"https://github.com/malachig","followers_url":"https://api.github.com/users/malachig/followers","following_url":"https://api.github.com/users/malachig/following{/other_user}","gists_url":"https://api.github.com/users/malachig/gists{/gist_id}","starred_url":"https://api.github.com/users/malachig/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/malachig/subscriptions","organizations_url":"https://api.github.com/users/malachig/orgs","repos_url":"https://api.github.com/users/malachig/repos","events_url":"https://api.github.com/users/malachig/events{/privacy}","received_events_url":"https://api.github.com/users/malachig/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-06-18T16:36:59Z","updated_at":"2018-06-29T20:13:07Z","closed_at":"2018-06-29T20:13:07Z","author_association":"NONE","body":"In adding support for mhcnuggets to pvactools @susannasiebert noted that the expected naming of HLA alleles is different between mhcnuggets and the iedb predictors.  \r\n\r\nFrom @susannasiebert, \r\nIn running pvactools, if someone wants to run allele HLA-A*02:01 on NetMHC and MHCnuggets they would need to specify this allele twice, once in the format HLA-A*02:01 (for NetMHC) and once as HLA-A0201 (MHCnuggets).\r\n\r\nWe will consider supporting multiple naming styles, but ideally this would be more standardized.  To me it looks like NetMHC (and others) are following the somewhat widely adopted standard format described here: http://hla.alleles.org/nomenclature/naming.html\r\n\r\nWould it be possible to add support for this style of HLA allele naming in mhcnuggets?"},"comment":{"url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0/issues/comments/401461868","html_url":"https://github.com/KarchinLab/mhcnuggets-2.0/issues/2#issuecomment-401461868","issue_url":"https://api.github.com/repos/KarchinLab/mhcnuggets-2.0/issues/2","id":401461868,"node_id":"MDEyOklzc3VlQ29tbWVudDQwMTQ2MTg2OA==","user":{"login":"rbhatta8","id":10222488,"node_id":"MDQ6VXNlcjEwMjIyNDg4","avatar_url":"https://avatars2.githubusercontent.com/u/10222488?v=4","gravatar_id":"","url":"https://api.github.com/users/rbhatta8","html_url":"https://github.com/rbhatta8","followers_url":"https://api.github.com/users/rbhatta8/followers","following_url":"https://api.github.com/users/rbhatta8/following{/other_user}","gists_url":"https://api.github.com/users/rbhatta8/gists{/gist_id}","starred_url":"https://api.github.com/users/rbhatta8/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rbhatta8/subscriptions","organizations_url":"https://api.github.com/users/rbhatta8/orgs","repos_url":"https://api.github.com/users/rbhatta8/repos","events_url":"https://api.github.com/users/rbhatta8/events{/privacy}","received_events_url":"https://api.github.com/users/rbhatta8/received_events","type":"User","site_admin":false},"created_at":"2018-06-29T20:13:07Z","updated_at":"2018-06-29T20:13:07Z","author_association":"CONTRIBUTOR","body":"Marking issue as closed for now :)"}}
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