{"action":"created","issue":{"url":"https://api.github.com/repos/popgenmethods/momi2/issues/4","repository_url":"https://api.github.com/repos/popgenmethods/momi2","labels_url":"https://api.github.com/repos/popgenmethods/momi2/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/popgenmethods/momi2/issues/4/comments","events_url":"https://api.github.com/repos/popgenmethods/momi2/issues/4/events","html_url":"https://github.com/popgenmethods/momi2/issues/4","id":324245249,"number":4,"title":"Installation using conda","user":{"login":"yss1","id":10172814,"avatar_url":"https://avatars3.githubusercontent.com/u/10172814?v=4","gravatar_id":"","url":"https://api.github.com/users/yss1","html_url":"https://github.com/yss1","followers_url":"https://api.github.com/users/yss1/followers","following_url":"https://api.github.com/users/yss1/following{/other_user}","gists_url":"https://api.github.com/users/yss1/gists{/gist_id}","starred_url":"https://api.github.com/users/yss1/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yss1/subscriptions","organizations_url":"https://api.github.com/users/yss1/orgs","repos_url":"https://api.github.com/users/yss1/repos","events_url":"https://api.github.com/users/yss1/events{/privacy}","received_events_url":"https://api.github.com/users/yss1/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-05-18T02:03:45Z","updated_at":"2018-05-18T12:05:24Z","closed_at":null,"author_association":"COLLABORATOR","body":"Installation using conda requires python 3.6 or higher.   Here is the error message I get when using python 3.5.\r\n\r\n---\r\nFetching package metadata ...............\r\nSolving package specifications: .\r\n\r\nUnsatisfiableError: The following specifications were found to be in conflict:\r\n  - momi -> python >=3.6,<3.7.0a0\r\n  - python 3.5*\r\nUse \"conda info <package>\" to see the dependencies for each package."},"comment":{"url":"https://api.github.com/repos/popgenmethods/momi2/issues/comments/390186145","html_url":"https://github.com/popgenmethods/momi2/issues/4#issuecomment-390186145","issue_url":"https://api.github.com/repos/popgenmethods/momi2/issues/4","id":390186145,"user":{"login":"jackkamm","id":9089216,"avatar_url":"https://avatars1.githubusercontent.com/u/9089216?v=4","gravatar_id":"","url":"https://api.github.com/users/jackkamm","html_url":"https://github.com/jackkamm","followers_url":"https://api.github.com/users/jackkamm/followers","following_url":"https://api.github.com/users/jackkamm/following{/other_user}","gists_url":"https://api.github.com/users/jackkamm/gists{/gist_id}","starred_url":"https://api.github.com/users/jackkamm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jackkamm/subscriptions","organizations_url":"https://api.github.com/users/jackkamm/orgs","repos_url":"https://api.github.com/users/jackkamm/repos","events_url":"https://api.github.com/users/jackkamm/events{/privacy}","received_events_url":"https://api.github.com/users/jackkamm/received_events","type":"User","site_admin":false},"created_at":"2018-05-18T12:05:24Z","updated_at":"2018-05-18T12:05:24Z","author_association":"COLLABORATOR","body":"I think there is some dependency hell happening due to using both the conda-forge and bioconda channels. Can you see if the following works:\r\n```\r\nconda install momi -c jackkamm -c conda-forge -c bioconda\r\n```\r\nthat is, switching the order of bioconda and conda-forge in the install instructions, which I think will give priority to conda-forge.\r\n\r\nYou may need to add `python=3.5` to ensure you are testing python3.5 instead of 3.6:\r\n```\r\nconda install momi python=3.5 -c jackkamm -c conda-forge -c bioconda\r\n```\r\n\r\nRight now conda-forge is needed for `msprime` and bioconda is needed for `pysam`. I think I will package `pysam` for conda-forge to avoid the need for bioconda. In the meantime let me know if the above works."}}
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