{"action":"opened","issue":{"url":"https://api.github.com/repos/PathwayCommons/factoid/issues/245","repository_url":"https://api.github.com/repos/PathwayCommons/factoid","labels_url":"https://api.github.com/repos/PathwayCommons/factoid/issues/245/labels{/name}","comments_url":"https://api.github.com/repos/PathwayCommons/factoid/issues/245/comments","events_url":"https://api.github.com/repos/PathwayCommons/factoid/issues/245/events","html_url":"https://github.com/PathwayCommons/factoid/issues/245","id":312640500,"number":245,"title":"Do not automatically apply Reach groundings","user":{"login":"maxkfranz","id":989043,"avatar_url":"https://avatars0.githubusercontent.com/u/989043?v=4","gravatar_id":"","url":"https://api.github.com/users/maxkfranz","html_url":"https://github.com/maxkfranz","followers_url":"https://api.github.com/users/maxkfranz/followers","following_url":"https://api.github.com/users/maxkfranz/following{/other_user}","gists_url":"https://api.github.com/users/maxkfranz/gists{/gist_id}","starred_url":"https://api.github.com/users/maxkfranz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maxkfranz/subscriptions","organizations_url":"https://api.github.com/users/maxkfranz/orgs","repos_url":"https://api.github.com/users/maxkfranz/repos","events_url":"https://api.github.com/users/maxkfranz/events{/privacy}","received_events_url":"https://api.github.com/users/maxkfranz/received_events","type":"User","site_admin":false},"labels":[{"id":777073494,"url":"https://api.github.com/repos/PathwayCommons/factoid/labels/discussion","name":"discussion","color":"94ed87","default":false},{"id":777060670,"url":"https://api.github.com/repos/PathwayCommons/factoid/labels/enhancement","name":"enhancement","color":"0052cc","default":true}],"state":"open","locked":false,"assignee":{"login":"maxkfranz","id":989043,"avatar_url":"https://avatars0.githubusercontent.com/u/989043?v=4","gravatar_id":"","url":"https://api.github.com/users/maxkfranz","html_url":"https://github.com/maxkfranz","followers_url":"https://api.github.com/users/maxkfranz/followers","following_url":"https://api.github.com/users/maxkfranz/following{/other_user}","gists_url":"https://api.github.com/users/maxkfranz/gists{/gist_id}","starred_url":"https://api.github.com/users/maxkfranz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maxkfranz/subscriptions","organizations_url":"https://api.github.com/users/maxkfranz/orgs","repos_url":"https://api.github.com/users/maxkfranz/repos","events_url":"https://api.github.com/users/maxkfranz/events{/privacy}","received_events_url":"https://api.github.com/users/maxkfranz/received_events","type":"User","site_admin":false},"assignees":[{"login":"maxkfranz","id":989043,"avatar_url":"https://avatars0.githubusercontent.com/u/989043?v=4","gravatar_id":"","url":"https://api.github.com/users/maxkfranz","html_url":"https://github.com/maxkfranz","followers_url":"https://api.github.com/users/maxkfranz/followers","following_url":"https://api.github.com/users/maxkfranz/following{/other_user}","gists_url":"https://api.github.com/users/maxkfranz/gists{/gist_id}","starred_url":"https://api.github.com/users/maxkfranz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maxkfranz/subscriptions","organizations_url":"https://api.github.com/users/maxkfranz/orgs","repos_url":"https://api.github.com/users/maxkfranz/repos","events_url":"https://api.github.com/users/maxkfranz/events{/privacy}","received_events_url":"https://api.github.com/users/maxkfranz/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-04-09T18:37:21Z","updated_at":"2018-04-09T18:37:21Z","closed_at":null,"author_association":"OWNER","body":"<!--\r\nAre you submitting a bug report or a feature\r\n<!-- FEATURE REQUEST : Delete if reporting a bug -->\r\n\r\n## Description of new feature\r\n\r\n<!-- What should the new feature do?  That is, what is the goal that the user will accomplish? -->\r\n\r\nA possibility to consider : Do not immediately set the grounding that comes back from Reach for an entity.  Possibly use the grounding as a hint that could be used in the weighted sorting of search results.\r\n\r\nNote : This may necessitate a redesign of the ungrounded entities, as it's not helpful to get back a graph full of \"?\" nodes.\r\n\r\n## Motivation for new feature\r\n\r\n<!-- Describe the use case for this new feature.  Why is the goal the user will accomplish important? -->\r\n\r\nThis approach could resolve these issues:\r\n\r\n1. When an entity comes back grounded from Reach, users tend not to verify the grounding: \"The name looks OK to me, so why should I bother to open it?\"\r\n2. It would help to resolve \"Pubchem is unreliable #228\": We don't need to use Pubchem just to have compatibility with Reach if we don't take Reach groundings as gospel.  In this case, all you lose is a grounding hint -- no big deal.\r\n\r\n\r\n<!-- END FEATURE REQUEST -->\r\n\r\n## Topics of discussion\r\n\r\n(A) Are there any strong reasons for using Pubchem over Chebi, *apart* from Reach using Pubchem?\r\n\r\n(B) Think about options to accommodate all entities coming back as ungrounded from Reach.\r\n"}}
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