{"action":"opened","issue":{"url":"https://api.github.com/repos/lianos/multiGSEA/issues/3","repository_url":"https://api.github.com/repos/lianos/multiGSEA","labels_url":"https://api.github.com/repos/lianos/multiGSEA/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/lianos/multiGSEA/issues/3/comments","events_url":"https://api.github.com/repos/lianos/multiGSEA/issues/3/events","html_url":"https://github.com/lianos/multiGSEA/issues/3","id":300907212,"number":3,"title":"Hard to debug error","user":{"login":"mukhyala","id":1018689,"avatar_url":"https://avatars3.githubusercontent.com/u/1018689?v=4","gravatar_id":"","url":"https://api.github.com/users/mukhyala","html_url":"https://github.com/mukhyala","followers_url":"https://api.github.com/users/mukhyala/followers","following_url":"https://api.github.com/users/mukhyala/following{/other_user}","gists_url":"https://api.github.com/users/mukhyala/gists{/gist_id}","starred_url":"https://api.github.com/users/mukhyala/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mukhyala/subscriptions","organizations_url":"https://api.github.com/users/mukhyala/orgs","repos_url":"https://api.github.com/users/mukhyala/repos","events_url":"https://api.github.com/users/mukhyala/events{/privacy}","received_events_url":"https://api.github.com/users/mukhyala/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-02-28T06:28:27Z","updated_at":"2018-02-28T06:28:27Z","closed_at":null,"author_association":"NONE","body":"Hi Steve,\r\n\r\nWe deployed the in-house shiny app for multiGSEA (EPMultiGSEA) on R 3.4.3 / Bioc 3.6 and the app started crashing with a stack trace pointing at multiGSEA (see below) - \r\n`\r\nListening on http://127.0.0.1:53405\r\n\r\nWarning: Error in [.data.frame: undefined columns selected\r\nStack trace (innermost first):\r\n    98: [.data.frame\r\n    97: [\r\n    96: mode\r\n    95: attr.all.equal\r\n    94: all.equal.character\r\n    93: all.equal\r\n    92: isTRUE\r\n    91: eval [/tmp/RtmpXPJG27/file112f7100472ae/multiGSEA/R/MultiGSEAResult-methods.R#285]\r\n    90: eval\r\n    89: eval\r\n    88: eval\r\n    87: eval.parent\r\n    86: local\r\n    85: result [/tmp/RtmpXPJG27/file112f7100472ae/multiGSEA/R/MultiGSEAResult-methods.R#283]\r\n    84: FUN [/tmp/RtmpXPJG27/file112f7100472ae/multiGSEA/R/MultiGSEAResult-methods.R#391]\r\n    83: lapply\r\n    82: tabulateResults [/tmp/RtmpXPJG27/file112f7100472ae/multiGSEA/R/MultiGSEAResult-methods.R#390]\r\n    81: summaryHTMLTable.multiGSEA [/tmp/RtmpXPJG27/file112f7100472ae/multiGSEA/R/shiny-utils.R#253]\r\n    80: tagList\r\n`\r\n\r\nIts been hard to debug for me so far. Any ideas what's going on or how best to debug further? Thanks!"}}
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