{"action":"closed","issue":{"url":"https://api.github.com/repos/stschiff/msmc/issues/9","repository_url":"https://api.github.com/repos/stschiff/msmc","labels_url":"https://api.github.com/repos/stschiff/msmc/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/stschiff/msmc/issues/9/comments","events_url":"https://api.github.com/repos/stschiff/msmc/issues/9/events","html_url":"https://github.com/stschiff/msmc/issues/9","id":72243585,"node_id":"MDU6SXNzdWU3MjI0MzU4NQ==","number":9,"title":"MSMC with genomes in multiple scaffolds, not in chromosomes","user":{"login":"BegonaMartinez","id":12189808,"node_id":"MDQ6VXNlcjEyMTg5ODA4","avatar_url":"https://avatars1.githubusercontent.com/u/12189808?v=4","gravatar_id":"","url":"https://api.github.com/users/BegonaMartinez","html_url":"https://github.com/BegonaMartinez","followers_url":"https://api.github.com/users/BegonaMartinez/followers","following_url":"https://api.github.com/users/BegonaMartinez/following{/other_user}","gists_url":"https://api.github.com/users/BegonaMartinez/gists{/gist_id}","starred_url":"https://api.github.com/users/BegonaMartinez/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BegonaMartinez/subscriptions","organizations_url":"https://api.github.com/users/BegonaMartinez/orgs","repos_url":"https://api.github.com/users/BegonaMartinez/repos","events_url":"https://api.github.com/users/BegonaMartinez/events{/privacy}","received_events_url":"https://api.github.com/users/BegonaMartinez/received_events","type":"User","site_admin":false},"labels":[{"id":213317245,"node_id":"MDU6TGFiZWwyMTMzMTcyNDU=","url":"https://api.github.com/repos/stschiff/msmc/labels/feature%20request","name":"feature request","color":"eb6420","default":false}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2015-04-30T18:33:44Z","updated_at":"2018-07-06T14:50:07Z","closed_at":"2018-07-06T14:50:07Z","author_association":"NONE","body":"Hi,\nI want to use MSMC with whole genomes which reference genome is in 1140 scaffolds. From your sentence: \"MSMC takes as input several files, one for each chromosome\" I wonder whether MSMC could still be used for genomes that are not properly grouped into chromosomes. Is it possible? Should I follow the same procedure as if I had chromosomes?\nThank you very much in advance.\n\nBMartinez\n"}}
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