{"action":"created","issue":{"url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns/issues/24","repository_url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns","labels_url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns/issues/24/labels{/name}","comments_url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns/issues/24/comments","events_url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns/issues/24/events","html_url":"https://github.com/UMCUGenetics/MutationalPatterns/issues/24","id":337838755,"node_id":"MDU6SXNzdWUzMzc4Mzg3NTU=","number":24,"title":" Find optimal contribution of known signatures","user":{"login":"sadafambreen","id":20967224,"node_id":"MDQ6VXNlcjIwOTY3MjI0","avatar_url":"https://avatars0.githubusercontent.com/u/20967224?v=4","gravatar_id":"","url":"https://api.github.com/users/sadafambreen","html_url":"https://github.com/sadafambreen","followers_url":"https://api.github.com/users/sadafambreen/followers","following_url":"https://api.github.com/users/sadafambreen/following{/other_user}","gists_url":"https://api.github.com/users/sadafambreen/gists{/gist_id}","starred_url":"https://api.github.com/users/sadafambreen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sadafambreen/subscriptions","organizations_url":"https://api.github.com/users/sadafambreen/orgs","repos_url":"https://api.github.com/users/sadafambreen/repos","events_url":"https://api.github.com/users/sadafambreen/events{/privacy}","received_events_url":"https://api.github.com/users/sadafambreen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2018-07-03T10:29:00Z","updated_at":"2018-07-03T11:21:28Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\nI have used MutationalPatterns for my own data. But, when i tried to plot mutational profile of the  COSMIC signatures. I got error. Can you help me to solve this problem. As, i write new_order = match(row.names(mut_mat), cancer_signatures$Somatic.Mutation.Type).  The new file contain ''NA''  all columns and rows.\r\n I thought, it can be error from my data. But, by using example data, i am getting  same error.  It seems simple, but i am unable to solve it? "},"comment":{"url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns/issues/comments/402117966","html_url":"https://github.com/UMCUGenetics/MutationalPatterns/issues/24#issuecomment-402117966","issue_url":"https://api.github.com/repos/UMCUGenetics/MutationalPatterns/issues/24","id":402117966,"node_id":"MDEyOklzc3VlQ29tbWVudDQwMjExNzk2Ng==","user":{"login":"sadafambreen","id":20967224,"node_id":"MDQ6VXNlcjIwOTY3MjI0","avatar_url":"https://avatars0.githubusercontent.com/u/20967224?v=4","gravatar_id":"","url":"https://api.github.com/users/sadafambreen","html_url":"https://github.com/sadafambreen","followers_url":"https://api.github.com/users/sadafambreen/followers","following_url":"https://api.github.com/users/sadafambreen/following{/other_user}","gists_url":"https://api.github.com/users/sadafambreen/gists{/gist_id}","starred_url":"https://api.github.com/users/sadafambreen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sadafambreen/subscriptions","organizations_url":"https://api.github.com/users/sadafambreen/orgs","repos_url":"https://api.github.com/users/sadafambreen/repos","events_url":"https://api.github.com/users/sadafambreen/events{/privacy}","received_events_url":"https://api.github.com/users/sadafambreen/received_events","type":"User","site_admin":false},"created_at":"2018-07-03T11:21:28Z","updated_at":"2018-07-03T11:21:28Z","author_association":"NONE","body":"> sessionInfo()\r\nR version 3.4.0 (2017-04-21)\r\nPlatform: x86_64-pc-linux-gnu (64-bit)\r\nRunning under: CentOS Linux 7 (Core)\r\n\r\nMatrix products: default\r\nBLAS: /software/biosoft/software/Rsoft/R3.4/lib64/R/lib/libRblas.so\r\nLAPACK: /software/biosoft/software/Rsoft/R3.4/lib64/R/lib/libRlapack.so\r\n\r\nlocale:\r\n [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C\r\n [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8\r\n [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8\r\n [7] LC_PAPER=en_US.UTF-8       LC_NAME=C\r\n [9] LC_ADDRESS=C               LC_TELEPHONE=C\r\n[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C\r\n\r\nattached base packages:\r\n[1] stats4    parallel  stats     graphics  grDevices utils     datasets\r\n[8] methods   base\r\n\r\nother attached packages:\r\n [1] gtools_3.5.0\r\n [2] gridExtra_2.3\r\n [3] doParallel_1.0.11\r\n [4] iterators_1.0.9\r\n [5] foreach_1.4.4\r\n [6] BSgenome.Cfamiliaris.UCSC.canFam3_1.4.0\r\n [7] BSgenome_1.44.2\r\n **[8] MutationalPatterns_1.2.1**\r\n [9] signeR_1.2.2\r\n[10] NMF_0.21.0\r\n[11] cluster_2.0.7-1\r\n[12] rngtools_1.3.1\r\n[13] pkgmaker_0.27\r\n[14] registry_0.5\r\n[15] rtracklayer_1.36.6\r\n[16] VariantAnnotation_1.22.3\r\n[17] Rsamtools_1.28.0\r\n[18] Biostrings_2.44.2\r\n[19] XVector_0.16.0\r\n[20] SummarizedExperiment_1.6.5\r\n[21] DelayedArray_0.2.7\r\n[22] matrixStats_0.53.1\r\n[23] Biobase_2.36.2\r\n[24] GenomicRanges_1.28.6\r\n[25] GenomeInfoDb_1.12.3\r\n[26] IRanges_2.10.5\r\n[27] S4Vectors_0.14.7\r\n[28] BiocGenerics_0.22.1\r\n[29] BiocInstaller_1.26.1\r\n"}}
{"actor":{"display_login":"sadafambreen"}}