{"action":"created","issue":{"url":"https://api.github.com/repos/ratschlab/spladder/issues/69","repository_url":"https://api.github.com/repos/ratschlab/spladder","labels_url":"https://api.github.com/repos/ratschlab/spladder/issues/69/labels{/name}","comments_url":"https://api.github.com/repos/ratschlab/spladder/issues/69/comments","events_url":"https://api.github.com/repos/ratschlab/spladder/issues/69/events","html_url":"https://github.com/ratschlab/spladder/issues/69","id":349314958,"node_id":"MDU6SXNzdWUzNDkzMTQ5NTg=","number":69,"title":"Error running spladder_test.py","user":{"login":"gupta567varun","id":7967159,"node_id":"MDQ6VXNlcjc5NjcxNTk=","avatar_url":"https://avatars3.githubusercontent.com/u/7967159?v=4","gravatar_id":"","url":"https://api.github.com/users/gupta567varun","html_url":"https://github.com/gupta567varun","followers_url":"https://api.github.com/users/gupta567varun/followers","following_url":"https://api.github.com/users/gupta567varun/following{/other_user}","gists_url":"https://api.github.com/users/gupta567varun/gists{/gist_id}","starred_url":"https://api.github.com/users/gupta567varun/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gupta567varun/subscriptions","organizations_url":"https://api.github.com/users/gupta567varun/orgs","repos_url":"https://api.github.com/users/gupta567varun/repos","events_url":"https://api.github.com/users/gupta567varun/events{/privacy}","received_events_url":"https://api.github.com/users/gupta567varun/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":8,"created_at":"2018-08-09T22:34:05Z","updated_at":"2018-08-14T11:11:22Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\nI am running spladder_test.py. This is my command line\r\n\r\n`python ~/spladder-master/python/spladder_test.py -a A1.bam,A2.bam,B1.bam,B2.bam -o ./SPLADDEROUTPUT2  --parallel=6`\r\nThis SPLADDEROUTPUT2 is the same directory which is created from python spladder.py\r\n\r\nI am getting this error:\r\n\r\n  matplotlib.use('Agg')\r\n\r\nCapped 7685/233152 outlier expression counts (3.30 percent)\r\nTraceback (most recent call last):\r\n  File \"/home/vgupta12/spladder-master/python/spladder_test.py\", line 1052, in <module>\r\n    main()\r\n  File \"/home/vgupta12/spladder-master/python/spladder_test.py\", line 960, in main\r\n    (pvals, cov_used, disp_raw_used, disp_adj_used) = run_testing(cov, dmatrix0, dmatrix1, sf, CFG, event_type, test_idx)\r\n  File \"/home/vgupta12/spladder-master/python/spladder_test.py\", line 642, in run_testing\r\n    (disp_raw, disp_raw_conv) = estimate_dispersion(cov, dmatrix1, sf, CFG, test_idx, event_type)\r\n  File \"/home/vgupta12/spladder-master/python/spladder_test.py\", line 316, in estimate_dispersion\r\n    tmp = result.pop(0).get()\r\n  File \"/home/vgupta12/anaconda2/lib/python2.7/multiprocessing/pool.py\", line 572, in get\r\n    raise self._value\r\n**TypeError: numpy boolean subtract, the `-` operator, is deprecated, use the bitwise_xor, the `^` operator, or the logical_xor function instead.**\r\n\r\nWhat can be the issue here? Hope to hear soon.\r\n\r\nThanks"},"comment":{"url":"https://api.github.com/repos/ratschlab/spladder/issues/comments/412836830","html_url":"https://github.com/ratschlab/spladder/issues/69#issuecomment-412836830","issue_url":"https://api.github.com/repos/ratschlab/spladder/issues/69","id":412836830,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMjgzNjgzMA==","user":{"login":"akahles","id":1839592,"node_id":"MDQ6VXNlcjE4Mzk1OTI=","avatar_url":"https://avatars2.githubusercontent.com/u/1839592?v=4","gravatar_id":"","url":"https://api.github.com/users/akahles","html_url":"https://github.com/akahles","followers_url":"https://api.github.com/users/akahles/followers","following_url":"https://api.github.com/users/akahles/following{/other_user}","gists_url":"https://api.github.com/users/akahles/gists{/gist_id}","starred_url":"https://api.github.com/users/akahles/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/akahles/subscriptions","organizations_url":"https://api.github.com/users/akahles/orgs","repos_url":"https://api.github.com/users/akahles/repos","events_url":"https://api.github.com/users/akahles/events{/privacy}","received_events_url":"https://api.github.com/users/akahles/received_events","type":"User","site_admin":false},"created_at":"2018-08-14T11:11:22Z","updated_at":"2018-08-14T11:11:22Z","author_association":"MEMBER","body":"Ok, thanks - will have a look."}}
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