{"action":"closed","issue":{"url":"https://api.github.com/repos/galaxyproject/sequence_utils/issues/17","repository_url":"https://api.github.com/repos/galaxyproject/sequence_utils","labels_url":"https://api.github.com/repos/galaxyproject/sequence_utils/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/sequence_utils/issues/17/comments","events_url":"https://api.github.com/repos/galaxyproject/sequence_utils/issues/17/events","html_url":"https://github.com/galaxyproject/sequence_utils/issues/17","id":369149865,"node_id":"MDU6SXNzdWUzNjkxNDk4NjU=","number":17,"title":"Running conda-installed gx-fastq-paired-end-joiner on terminal","user":{"login":"rassob","id":14015188,"node_id":"MDQ6VXNlcjE0MDE1MTg4","avatar_url":"https://avatars2.githubusercontent.com/u/14015188?v=4","gravatar_id":"","url":"https://api.github.com/users/rassob","html_url":"https://github.com/rassob","followers_url":"https://api.github.com/users/rassob/followers","following_url":"https://api.github.com/users/rassob/following{/other_user}","gists_url":"https://api.github.com/users/rassob/gists{/gist_id}","starred_url":"https://api.github.com/users/rassob/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rassob/subscriptions","organizations_url":"https://api.github.com/users/rassob/orgs","repos_url":"https://api.github.com/users/rassob/repos","events_url":"https://api.github.com/users/rassob/events{/privacy}","received_events_url":"https://api.github.com/users/rassob/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-10-11T14:30:39Z","updated_at":"2018-10-12T12:46:14Z","closed_at":"2018-10-12T12:46:14Z","author_association":"NONE","body":"Hi,\r\nI am trying to combine two fastq.gz files (paired-end) based on their sequence identifier. \r\nI installed the \"galaxy_sequence_utils\" package through the bioconda channel (version 1.1.3-py_0). The version of my Python is 3.6.2.\r\n\r\nWhen I use the \"gx-fastq-paired-end-joiner\" command, however, I keep getting the error:\r\n\r\n```\r\nTraceback (most recent call last):\r\n  File \"/n/home13/miniconda3/envs/py1/bin/gx-fastq-paired-end-joiner\", line 10, in <module>\r\n    sys.exit(main())\r\n  File \"/n/home13/miniconda3/envs/py1/lib/python3.6/site-packages/galaxy_utils/sequence/scripts/fastq_paired_end_joiner.py\", line 123, in main\r\n    input1_filename = sys.argv[1]\r\nIndexError: list index out of range\r\n```\r\nWhat is the proper usage of this tool in the command line?  I am trying:\r\n\r\n``\r\ngx-fastq-paired-end-joiner Read1.fastq.gz Read2.fastq.gz \r\n``\r\n\r\nThanks for your help! \r\n\r\nRasim"}}
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