{"action":"created","issue":{"url":"https://api.github.com/repos/iqbal-lab-org/gramtools/issues/72","repository_url":"https://api.github.com/repos/iqbal-lab-org/gramtools","labels_url":"https://api.github.com/repos/iqbal-lab-org/gramtools/issues/72/labels{/name}","comments_url":"https://api.github.com/repos/iqbal-lab-org/gramtools/issues/72/comments","events_url":"https://api.github.com/repos/iqbal-lab-org/gramtools/issues/72/events","html_url":"https://github.com/iqbal-lab-org/gramtools/issues/72","id":258172499,"node_id":"MDU6SXNzdWUyNTgxNzI0OTk=","number":72,"title":"Release 0.5 requirements","user":{"login":"iqbal-lab","id":6476513,"node_id":"MDQ6VXNlcjY0NzY1MTM=","avatar_url":"https://avatars2.githubusercontent.com/u/6476513?v=4","gravatar_id":"","url":"https://api.github.com/users/iqbal-lab","html_url":"https://github.com/iqbal-lab","followers_url":"https://api.github.com/users/iqbal-lab/followers","following_url":"https://api.github.com/users/iqbal-lab/following{/other_user}","gists_url":"https://api.github.com/users/iqbal-lab/gists{/gist_id}","starred_url":"https://api.github.com/users/iqbal-lab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/iqbal-lab/subscriptions","organizations_url":"https://api.github.com/users/iqbal-lab/orgs","repos_url":"https://api.github.com/users/iqbal-lab/repos","events_url":"https://api.github.com/users/iqbal-lab/events{/privacy}","received_events_url":"https://api.github.com/users/iqbal-lab/received_events","type":"User","site_admin":false},"labels":[{"id":197980215,"node_id":"MDU6TGFiZWwxOTc5ODAyMTU=","url":"https://api.github.com/repos/iqbal-lab-org/gramtools/labels/help%20wanted","name":"help wanted","color":"159818","default":true}],"state":"open","locked":false,"assignee":{"login":"rffrancon","id":5958289,"node_id":"MDQ6VXNlcjU5NTgyODk=","avatar_url":"https://avatars0.githubusercontent.com/u/5958289?v=4","gravatar_id":"","url":"https://api.github.com/users/rffrancon","html_url":"https://github.com/rffrancon","followers_url":"https://api.github.com/users/rffrancon/followers","following_url":"https://api.github.com/users/rffrancon/following{/other_user}","gists_url":"https://api.github.com/users/rffrancon/gists{/gist_id}","starred_url":"https://api.github.com/users/rffrancon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rffrancon/subscriptions","organizations_url":"https://api.github.com/users/rffrancon/orgs","repos_url":"https://api.github.com/users/rffrancon/repos","events_url":"https://api.github.com/users/rffrancon/events{/privacy}","received_events_url":"https://api.github.com/users/rffrancon/received_events","type":"User","site_admin":false},"assignees":[{"login":"rffrancon","id":5958289,"node_id":"MDQ6VXNlcjU5NTgyODk=","avatar_url":"https://avatars0.githubusercontent.com/u/5958289?v=4","gravatar_id":"","url":"https://api.github.com/users/rffrancon","html_url":"https://github.com/rffrancon","followers_url":"https://api.github.com/users/rffrancon/followers","following_url":"https://api.github.com/users/rffrancon/following{/other_user}","gists_url":"https://api.github.com/users/rffrancon/gists{/gist_id}","starred_url":"https://api.github.com/users/rffrancon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rffrancon/subscriptions","organizations_url":"https://api.github.com/users/rffrancon/orgs","repos_url":"https://api.github.com/users/rffrancon/repos","events_url":"https://api.github.com/users/rffrancon/events{/privacy}","received_events_url":"https://api.github.com/users/rffrancon/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2017-09-15T21:43:46Z","updated_at":"2018-06-06T13:53:15Z","closed_at":null,"author_association":"COLLABORATOR","body":"- [x] 1) Build from VCF\r\n- [ ] 2) Works for Release 0.5 datasets (https://github.com/iqbal-lab-org/gramtools/issues/74)\r\n- [x] 3) Indexing kmers takes <2 days with 24 cores for Release 0.5 datasets\r\n- [x] 4) Handle mapping of fwd and rev comp reads (naive sufficient)\r\n- [x] 5) Outputs mosaic fasta and VCF at graph sites\r\n- [ ] 6) Tube map support? (optional)\r\n- [x] 7) Merge with master, update README\r\n\r\nItem 2 is the biggest, as far as I can see. Item 5 is optional."},"comment":{"url":"https://api.github.com/repos/iqbal-lab-org/gramtools/issues/comments/395076432","html_url":"https://github.com/iqbal-lab-org/gramtools/issues/72#issuecomment-395076432","issue_url":"https://api.github.com/repos/iqbal-lab-org/gramtools/issues/72","id":395076432,"node_id":"MDEyOklzc3VlQ29tbWVudDM5NTA3NjQzMg==","user":{"login":"rffrancon","id":5958289,"node_id":"MDQ6VXNlcjU5NTgyODk=","avatar_url":"https://avatars0.githubusercontent.com/u/5958289?v=4","gravatar_id":"","url":"https://api.github.com/users/rffrancon","html_url":"https://github.com/rffrancon","followers_url":"https://api.github.com/users/rffrancon/followers","following_url":"https://api.github.com/users/rffrancon/following{/other_user}","gists_url":"https://api.github.com/users/rffrancon/gists{/gist_id}","starred_url":"https://api.github.com/users/rffrancon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rffrancon/subscriptions","organizations_url":"https://api.github.com/users/rffrancon/orgs","repos_url":"https://api.github.com/users/rffrancon/repos","events_url":"https://api.github.com/users/rffrancon/events{/privacy}","received_events_url":"https://api.github.com/users/rffrancon/received_events","type":"User","site_admin":false},"created_at":"2018-06-06T13:53:15Z","updated_at":"2018-06-06T13:53:15Z","author_association":"MEMBER","body":"@iqbal-lab Can we close this issue?"}}
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