{"action":"created","comment":{"url":"https://api.github.com/repos/aces/Loris-MRI/pulls/comments/214097557","pull_request_review_id":151079056,"id":214097557,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIxNDA5NzU1Nw==","diff_hunk":"@@ -0,0 +1,635 @@\n+#! /usr/bin/perl\n+\n+use strict;\n+use warnings;\n+use Getopt::Tabular;\n+use File::Path qw/ make_path /;\n+use File::Basename;\n+use NeuroDB::DBI;\n+use NeuroDB::ExitCodes;\n+use JSON;\n+\n+my $profile             = undef;\n+my $tarchiveID          = undef;\n+my $BIDSVersion         = \"1.1.1\";\n+my $LORISScriptVersion  = \"0.1\"; # Still a Beta version\n+my $datasetName         = undef;\n+my $sliceOrderPhilips   = \"Not Supplied\";\n+my $verbose             = 0;\n+\n+my @opt_table = (\n+    [ \"-profile\", \"string\", 1, \\$profile,\n+      \"name of config file in ../dicom-archive/.loris_mri\"\n+    ],\n+    [ \"-tarchive_id\", \"string\", 1, \\$tarchiveID,\n+      \"tarchive_id of the .tar to be processed from tarchive table\"\n+    ],\n+    [ \"-dataset_name\", \"string\", 1, \\$datasetName,\n+      \"Name/Description of the dataset about to be generated in BIDS format; for example BIDS_First_Sample_Data\"\n+    ],\n+    [ \"-slice_order_philips\", \"string\", 1, \\$sliceOrderPhilips,\n+            \"Philips scanners do not have the SliceOrder in their DICOMs so\n+            provide it as an argument; 'ascending' or 'descending' is expected;\n+            otherwise, it will be logged in the JSON as 'Not Supplied'\"\n+    ],\n+    [\"-verbose\", \"boolean\", 1,   \\$verbose, \"Be verbose.\"]\n+);\n+\n+my $Help = <<HELP;\n+\n+This **BETA** version script will create a BIDS compliant NII file structure of\n+the MINC files currently present in the `assembly/` directory. 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