{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/amigo/issues/69","repository_url":"https://api.github.com/repos/geneontology/amigo","labels_url":"https://api.github.com/repos/geneontology/amigo/issues/69/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/amigo/issues/69/comments","events_url":"https://api.github.com/repos/geneontology/amigo/issues/69/events","html_url":"https://github.com/geneontology/amigo/issues/69","id":28357594,"node_id":"MDU6SXNzdWUyODM1NzU5NA==","number":69,"title":"Bulk access to documents using bulk input","user":{"login":"kltm","id":2687900,"node_id":"MDQ6VXNlcjI2ODc5MDA=","avatar_url":"https://avatars3.githubusercontent.com/u/2687900?v=4","gravatar_id":"","url":"https://api.github.com/users/kltm","html_url":"https://github.com/kltm","followers_url":"https://api.github.com/users/kltm/followers","following_url":"https://api.github.com/users/kltm/following{/other_user}","gists_url":"https://api.github.com/users/kltm/gists{/gist_id}","starred_url":"https://api.github.com/users/kltm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kltm/subscriptions","organizations_url":"https://api.github.com/users/kltm/orgs","repos_url":"https://api.github.com/users/kltm/repos","events_url":"https://api.github.com/users/kltm/events{/privacy}","received_events_url":"https://api.github.com/users/kltm/received_events","type":"User","site_admin":false},"labels":[{"id":27023962,"node_id":"MDU6TGFiZWwyNzAyMzk2Mg==","url":"https://api.github.com/repos/geneontology/amigo/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":34,"created_at":"2014-02-26T18:37:50Z","updated_at":"2018-09-28T15:17:23Z","closed_at":null,"author_association":"MEMBER","body":"The bulk download of annotations with gene product input is an occasionally used feature of AmiGO 1.x that I suspect might be missed.\n\nThe easiest implementation would be a series of queries to the GOlr server, with the results hashed on the perl side as we go to get rid of dupes.\n"},"comment":{"url":"https://api.github.com/repos/geneontology/amigo/issues/comments/425469613","html_url":"https://github.com/geneontology/amigo/issues/69#issuecomment-425469613","issue_url":"https://api.github.com/repos/geneontology/amigo/issues/69","id":425469613,"node_id":"MDEyOklzc3VlQ29tbWVudDQyNTQ2OTYxMw==","user":{"login":"ukemi","id":11067494,"node_id":"MDQ6VXNlcjExMDY3NDk0","avatar_url":"https://avatars3.githubusercontent.com/u/11067494?v=4","gravatar_id":"","url":"https://api.github.com/users/ukemi","html_url":"https://github.com/ukemi","followers_url":"https://api.github.com/users/ukemi/followers","following_url":"https://api.github.com/users/ukemi/following{/other_user}","gists_url":"https://api.github.com/users/ukemi/gists{/gist_id}","starred_url":"https://api.github.com/users/ukemi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ukemi/subscriptions","organizations_url":"https://api.github.com/users/ukemi/orgs","repos_url":"https://api.github.com/users/ukemi/repos","events_url":"https://api.github.com/users/ukemi/events{/privacy}","received_events_url":"https://api.github.com/users/ukemi/received_events","type":"User","site_admin":false},"created_at":"2018-09-28T15:17:23Z","updated_at":"2018-09-28T15:17:23Z","author_association":"NONE","body":"Testing: Gene/product/bioentity: http://amigo.geneontology.org/amigo/bulk_search/bioentity\r\n\r\nThe search should be made case insensitive. Using the Gene/product (bioentity_label) and searching on Trib3 should return the human TRIB3 gene as well as mouse and rat.\r\n\r\nTo make things clearer, I would relabel the choices:\r\nGene/product (bioentity)----Gene Identifier using a prefix:identifier format (eg MGI:MGI:1345675 or PomBase:SPCC63.02c)\r\nGene/product (bioentity_label)---- Gene Symbol (eg Trib3)\r\nGene/product name (bioentity_name)---- Gene or protein name\r\nThis should not be displayed (bioentity_internal_id)------- get rid of this choice\r\nSynonyms (synonym)----- Synonyms\r\nInvolved in (isa_partof_closure_label)----- 'GO term' without genes that are annotated to 'regulation of GO term' I tried 'heart development' and 'limb development' no results. Also tried GO identifiers with no results returned.\r\nInferred annotation (regulates_closure)---- 'GO term' including genes annotated to 'regulation of GO term'. I tried GO:0043405 and got back a list of genes that don't make sense.\r\nInferred annotation (regulates_closure_label)---- What is the difference between this and the choice above this?\r\nPANTHER family (panther_family)---- This is useful, but doesn't seem to be working\r\nPANTHER family (panther_family_label)-----This is useful, but doesn't seem to be working\r\nOrganism (taxon_label)----- How useful is this? If it works, won't it return all the genes for a given organism?\r\n"}}
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