{"action":"created","issue":{"url":"https://api.github.com/repos/tseemann/abricate/issues/65","repository_url":"https://api.github.com/repos/tseemann/abricate","labels_url":"https://api.github.com/repos/tseemann/abricate/issues/65/labels{/name}","comments_url":"https://api.github.com/repos/tseemann/abricate/issues/65/comments","events_url":"https://api.github.com/repos/tseemann/abricate/issues/65/events","html_url":"https://github.com/tseemann/abricate/issues/65","id":367957096,"node_id":"MDU6SXNzdWUzNjc5NTcwOTY=","number":65,"title":"bitscore in CARD output and summary ","user":{"login":"darwinbandoy","id":41028755,"node_id":"MDQ6VXNlcjQxMDI4NzU1","avatar_url":"https://avatars1.githubusercontent.com/u/41028755?v=4","gravatar_id":"","url":"https://api.github.com/users/darwinbandoy","html_url":"https://github.com/darwinbandoy","followers_url":"https://api.github.com/users/darwinbandoy/followers","following_url":"https://api.github.com/users/darwinbandoy/following{/other_user}","gists_url":"https://api.github.com/users/darwinbandoy/gists{/gist_id}","starred_url":"https://api.github.com/users/darwinbandoy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/darwinbandoy/subscriptions","organizations_url":"https://api.github.com/users/darwinbandoy/orgs","repos_url":"https://api.github.com/users/darwinbandoy/repos","events_url":"https://api.github.com/users/darwinbandoy/events{/privacy}","received_events_url":"https://api.github.com/users/darwinbandoy/received_events","type":"User","site_admin":false},"labels":[{"id":114595438,"node_id":"MDU6TGFiZWwxMTQ1OTU0Mzg=","url":"https://api.github.com/repos/tseemann/abricate/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"closed","locked":false,"assignee":{"login":"tseemann","id":453972,"node_id":"MDQ6VXNlcjQ1Mzk3Mg==","avatar_url":"https://avatars2.githubusercontent.com/u/453972?v=4","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"assignees":[{"login":"tseemann","id":453972,"node_id":"MDQ6VXNlcjQ1Mzk3Mg==","avatar_url":"https://avatars2.githubusercontent.com/u/453972?v=4","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2018-10-08T21:20:20Z","updated_at":"2018-10-10T04:16:47Z","closed_at":"2018-10-10T04:16:47Z","author_association":"NONE","body":"Card-RGI usually generates bitscore to classify perfect and strict hits- can that be included as an output in the file of Abricate? And be included in the summary function as well? Thanks!"},"comment":{"url":"https://api.github.com/repos/tseemann/abricate/issues/comments/428432284","html_url":"https://github.com/tseemann/abricate/issues/65#issuecomment-428432284","issue_url":"https://api.github.com/repos/tseemann/abricate/issues/65","id":428432284,"node_id":"MDEyOklzc3VlQ29tbWVudDQyODQzMjI4NA==","user":{"login":"darwinbandoy","id":41028755,"node_id":"MDQ6VXNlcjQxMDI4NzU1","avatar_url":"https://avatars1.githubusercontent.com/u/41028755?v=4","gravatar_id":"","url":"https://api.github.com/users/darwinbandoy","html_url":"https://github.com/darwinbandoy","followers_url":"https://api.github.com/users/darwinbandoy/followers","following_url":"https://api.github.com/users/darwinbandoy/following{/other_user}","gists_url":"https://api.github.com/users/darwinbandoy/gists{/gist_id}","starred_url":"https://api.github.com/users/darwinbandoy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/darwinbandoy/subscriptions","organizations_url":"https://api.github.com/users/darwinbandoy/orgs","repos_url":"https://api.github.com/users/darwinbandoy/repos","events_url":"https://api.github.com/users/darwinbandoy/events{/privacy}","received_events_url":"https://api.github.com/users/darwinbandoy/received_events","type":"User","site_admin":false},"created_at":"2018-10-10T04:16:47Z","updated_at":"2018-10-10T04:16:47Z","author_association":"NONE","body":"I was not specifically thinking of the technicalities of the bitscore ( I apologize for that and please be patient with my inexperience), but I was using abricate (inputting the CARD database) because abricate can generate a summarized version of all the runs. I am analyzing 113 genomes and merging together them in one file seems a challenge using CARD RGI per se,  so I used abricate summary but my PI needs the strict,perfect hits threshold. So essentially I dingdong between the tools. "}}
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