{"action":"opened","issue":{"url":"https://api.github.com/repos/bardin-lab/readtagger/issues/137","repository_url":"https://api.github.com/repos/bardin-lab/readtagger","labels_url":"https://api.github.com/repos/bardin-lab/readtagger/issues/137/labels{/name}","comments_url":"https://api.github.com/repos/bardin-lab/readtagger/issues/137/comments","events_url":"https://api.github.com/repos/bardin-lab/readtagger/issues/137/events","html_url":"https://github.com/bardin-lab/readtagger/issues/137","id":349156066,"node_id":"MDU6SXNzdWUzNDkxNTYwNjY=","number":137,"title":"tagging reads doesn't tolerate if target misses reads","user":{"login":"mvdbeek","id":6804901,"node_id":"MDQ6VXNlcjY4MDQ5MDE=","avatar_url":"https://avatars1.githubusercontent.com/u/6804901?v=4","gravatar_id":"","url":"https://api.github.com/users/mvdbeek","html_url":"https://github.com/mvdbeek","followers_url":"https://api.github.com/users/mvdbeek/followers","following_url":"https://api.github.com/users/mvdbeek/following{/other_user}","gists_url":"https://api.github.com/users/mvdbeek/gists{/gist_id}","starred_url":"https://api.github.com/users/mvdbeek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mvdbeek/subscriptions","organizations_url":"https://api.github.com/users/mvdbeek/orgs","repos_url":"https://api.github.com/users/mvdbeek/repos","events_url":"https://api.github.com/users/mvdbeek/events{/privacy}","received_events_url":"https://api.github.com/users/mvdbeek/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-08-09T14:36:00Z","updated_at":"2018-08-09T14:36:00Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"for instance if removing duplicates in the target, but the source still contains those reads.\r\nFirst and foremost messes up the chunking, and then blows up with memory issues.\r\n\r\nProbably need to be smarter about how far in the target file we want to look for the source read."}}
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