{"action":"closed","issue":{"url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/95","repository_url":"https://api.github.com/repos/bioinformatics-centre/kaiju","labels_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/95/labels{/name}","comments_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/95/comments","events_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/95/events","html_url":"https://github.com/bioinformatics-centre/kaiju/issues/95","id":373589059,"node_id":"MDU6SXNzdWUzNzM1ODkwNTk=","number":95,"title":"Error - core dumped! ","user":{"login":"antonioggsousa","id":22957109,"node_id":"MDQ6VXNlcjIyOTU3MTA5","avatar_url":"https://avatars3.githubusercontent.com/u/22957109?v=4","gravatar_id":"","url":"https://api.github.com/users/antonioggsousa","html_url":"https://github.com/antonioggsousa","followers_url":"https://api.github.com/users/antonioggsousa/followers","following_url":"https://api.github.com/users/antonioggsousa/following{/other_user}","gists_url":"https://api.github.com/users/antonioggsousa/gists{/gist_id}","starred_url":"https://api.github.com/users/antonioggsousa/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/antonioggsousa/subscriptions","organizations_url":"https://api.github.com/users/antonioggsousa/orgs","repos_url":"https://api.github.com/users/antonioggsousa/repos","events_url":"https://api.github.com/users/antonioggsousa/events{/privacy}","received_events_url":"https://api.github.com/users/antonioggsousa/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-10-24T17:17:06Z","updated_at":"2018-11-28T19:05:37Z","closed_at":"2018-11-28T19:05:37Z","author_association":"NONE","body":"Hi, \r\nI'm running Kaiju on an Ubuntu 18.0 LTS system, with 4 cores and 16 Gb RAM. \r\n\r\nI have installed Kaiju successfully, and then due to limited RAM memory, I downloaded the Mar databases, with `makeDB.sh -m`. Although, the documentation says that we need two files 'nodes.dmp' and other with the '.fmi' extension, I just got the first, and the closest match with the second was the file 'mkfmi'. \r\n\r\nWhen I tried to run Kaiju, i got the following error: \r\n\r\n`./kaiju -t nodes.dmp -f mkfmi -i 1_orf.nucl.fasta -z4 -o 1_metaTAX.tab\r\nSegmentation fault (core dumped)`\r\n\r\nI do not know if the error arose due to the wrong database or other issue. \r\nI hope that someone can help on this!\r\nThanks in advance. \r\nCheers, \r\nAntónio"}}
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