{"action":"opened","issue":{"url":"https://api.github.com/repos/JonathanShor/DoubletDetection/issues/107","repository_url":"https://api.github.com/repos/JonathanShor/DoubletDetection","labels_url":"https://api.github.com/repos/JonathanShor/DoubletDetection/issues/107/labels{/name}","comments_url":"https://api.github.com/repos/JonathanShor/DoubletDetection/issues/107/comments","events_url":"https://api.github.com/repos/JonathanShor/DoubletDetection/issues/107/events","html_url":"https://github.com/JonathanShor/DoubletDetection/issues/107","id":334932963,"node_id":"MDU6SXNzdWUzMzQ5MzI5NjM=","number":107,"title":"Vectorize synthetic doublet creation","user":{"login":"adamgayoso","id":10859440,"node_id":"MDQ6VXNlcjEwODU5NDQw","avatar_url":"https://avatars2.githubusercontent.com/u/10859440?v=4","gravatar_id":"","url":"https://api.github.com/users/adamgayoso","html_url":"https://github.com/adamgayoso","followers_url":"https://api.github.com/users/adamgayoso/followers","following_url":"https://api.github.com/users/adamgayoso/following{/other_user}","gists_url":"https://api.github.com/users/adamgayoso/gists{/gist_id}","starred_url":"https://api.github.com/users/adamgayoso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adamgayoso/subscriptions","organizations_url":"https://api.github.com/users/adamgayoso/orgs","repos_url":"https://api.github.com/users/adamgayoso/repos","events_url":"https://api.github.com/users/adamgayoso/events{/privacy}","received_events_url":"https://api.github.com/users/adamgayoso/received_events","type":"User","site_admin":false},"labels":[{"id":569672718,"node_id":"MDU6TGFiZWw1Njk2NzI3MTg=","url":"https://api.github.com/repos/JonathanShor/DoubletDetection/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-06-22T16:00:17Z","updated_at":"2018-06-22T16:00:17Z","closed_at":null,"author_association":"COLLABORATOR","body":"We can likely improve the speed of this process\r\n       \r\n         choices = np.random.choice(self._num_cells, size=(num_synths, 2), replace=self.replace)\r\n         for i, parent_pair in enumerate(choices):\r\n            row1 = parent_pair[0]\r\n            row2 = parent_pair[1]\r\n            if self.new_lib_as is not None:\r\n                new_row = self._downsampleCellPair(self._raw_counts[row1], self._raw_counts[row2])\r\n            else:\r\n                new_row = self._raw_counts[row1] + self._raw_counts[row2]\r\n            synthetic[i] = new_row\r\n            parents.append([row1, row2])"}}
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