{"action":"created","issue":{"url":"https://api.github.com/repos/INCF/bids-validator/issues/565","repository_url":"https://api.github.com/repos/INCF/bids-validator","labels_url":"https://api.github.com/repos/INCF/bids-validator/issues/565/labels{/name}","comments_url":"https://api.github.com/repos/INCF/bids-validator/issues/565/comments","events_url":"https://api.github.com/repos/INCF/bids-validator/issues/565/events","html_url":"https://github.com/INCF/bids-validator/issues/565","id":360900610,"node_id":"MDU6SXNzdWUzNjA5MDA2MTA=","number":565,"title":"XXX_FILE_WITH_TOO_MANY_DIMENSIONS","user":{"login":"benoitberanger","id":16976839,"node_id":"MDQ6VXNlcjE2OTc2ODM5","avatar_url":"https://avatars0.githubusercontent.com/u/16976839?v=4","gravatar_id":"","url":"https://api.github.com/users/benoitberanger","html_url":"https://github.com/benoitberanger","followers_url":"https://api.github.com/users/benoitberanger/followers","following_url":"https://api.github.com/users/benoitberanger/following{/other_user}","gists_url":"https://api.github.com/users/benoitberanger/gists{/gist_id}","starred_url":"https://api.github.com/users/benoitberanger/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/benoitberanger/subscriptions","organizations_url":"https://api.github.com/users/benoitberanger/orgs","repos_url":"https://api.github.com/users/benoitberanger/repos","events_url":"https://api.github.com/users/benoitberanger/events{/privacy}","received_events_url":"https://api.github.com/users/benoitberanger/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2018-09-17T14:38:32Z","updated_at":"2018-09-17T17:04:05Z","closed_at":null,"author_association":"NONE","body":"Hello,\r\n\r\nA new error appeared since the last time I used _bids-validator_ 3 days ago (Friday 14-sept-2018) :\r\n\r\n***\r\n\r\n`Error 2: [Code 95] T1W_FILE_WITH_TOO_MANY_DIMENSIONS`\r\nHowever : \r\n```\r\nmrinfo bids/sub-20180626AGENT10060/ses-S1/anat/sub-20180626AGENT10060_ses-S1_run-1_T1w.nii.gz\r\n************************************************\r\nImage:               \"bids/sub-20180626AGENT10060/ses-S1/anat/sub-20180626AGENT10060_ses-S1_run-1_T1w.nii.gz\"\r\n************************************************\r\n  Dimensions:        176 x 232 x 256\r\n  Voxel size:        1 x 1 x 1\r\n  Data strides:      [ -1 2 3 ]\r\n  Format:            NIfTI-1.1 (GZip compressed)\r\n  Data type:         signed 16 bit integer (little endian)\r\n  Intensity scaling: offset = 0, multiplier = 1\r\n  Transform:                    1           0           0       -87.5\r\n                               -0           1           0      -98.04\r\n                               -0           0           1      -147.8\r\n```\r\n\r\n***\r\n\r\nSame thing for field map :\r\n`Error 1: [Code 94] MAGNITUDE_FILE_WITH_TOO_MANY_DIMENSIONS`\r\n```\r\nmrinfo bids/sub-20180626AGENT10060/ses-S1/fmap/sub-20180626AGENT10060_ses-S1_run-1_magnitude1.nii.gz\r\n************************************************\r\nImage:               \"bids/sub-20180626AGENT10060/ses-S1/fmap/sub-20180626AGENT10060_ses-S1_run-1_magnitude1.nii.gz\"\r\n************************************************\r\n  Dimensions:        70 x 70 x 50\r\n  Voxel size:        3 x 3 x 3\r\n  Data strides:      [ -1 2 3 ]\r\n  Format:            NIfTI-1.1 (GZip compressed)\r\n  Data type:         signed 16 bit integer (little endian)\r\n  Intensity scaling: offset = 0, multiplier = 1\r\n  Transform:                    1           0           0        -102\r\n                               -0       0.986     -0.1668      -80.31\r\n                               -0      0.1668       0.986      -79.82\r\n```\r\nI didn't change my data set not the script to make them BIDS compatible.\r\nCould the problem come from _bids-validator_ itself ?\r\n\r\nThanks you for your help\r\nBenoît"},"comment":{"url":"https://api.github.com/repos/INCF/bids-validator/issues/comments/422093924","html_url":"https://github.com/INCF/bids-validator/issues/565#issuecomment-422093924","issue_url":"https://api.github.com/repos/INCF/bids-validator/issues/565","id":422093924,"node_id":"MDEyOklzc3VlQ29tbWVudDQyMjA5MzkyNA==","user":{"login":"chrisfilo","id":238759,"node_id":"MDQ6VXNlcjIzODc1OQ==","avatar_url":"https://avatars2.githubusercontent.com/u/238759?v=4","gravatar_id":"","url":"https://api.github.com/users/chrisfilo","html_url":"https://github.com/chrisfilo","followers_url":"https://api.github.com/users/chrisfilo/followers","following_url":"https://api.github.com/users/chrisfilo/following{/other_user}","gists_url":"https://api.github.com/users/chrisfilo/gists{/gist_id}","starred_url":"https://api.github.com/users/chrisfilo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chrisfilo/subscriptions","organizations_url":"https://api.github.com/users/chrisfilo/orgs","repos_url":"https://api.github.com/users/chrisfilo/repos","events_url":"https://api.github.com/users/chrisfilo/events{/privacy}","received_events_url":"https://api.github.com/users/chrisfilo/received_events","type":"User","site_admin":false},"created_at":"2018-09-17T17:04:05Z","updated_at":"2018-09-17T17:04:05Z","author_association":"MEMBER","body":"How does the header look like in case of T1w files in https://openneuro.org/datasets/ds001505/versions/2.0.1 ?"}}
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