{"action":"created","comment":{"url":"https://api.github.com/repos/PlasmaPy/PlasmaPy/pulls/comments/178231395","pull_request_review_id":108261828,"id":178231395,"diff_hunk":"@@ -595,11 +564,19 @@ def collision_rate_electron_ion(T_e,\n         String signifying a particle type of the field ions, including charge\n         state information.\n \n+    V : ~astropy.units.Quantity, optional\n+        The relative velocity between particles.  If not provided,\n+        thermal velocity is assumed: :math:`\\mu V^2 \\sim 2 k_B T`\n+        where `mu` is the reduced mass.\n+\n     coulomb_log : float or dimensionless ~astropy.units.Quantity, optional\n         Option to specify a Coulomb logarithm of the electrons on the ions.\n         If not specified, the Coulomb log will is calculated using the\n         `~plasmapy.physics.transport.Coulomb_logarithm` function.\n \n+    coulomb_log_method : string, optional\n+        Method used for Coulomb logarithm calculation (see that function","path":"plasmapy/physics/parameters.py","position":488,"original_position":486,"commit_id":"1833878cf4f8312e9fe75e57c9af182ea8cfd23b","original_commit_id":"8d1e6378fee1fae7753f01f7ebeccb502a25d512","user":{"login":"StanczakDominik","id":11289391,"avatar_url":"https://avatars0.githubusercontent.com/u/11289391?v=4","gravatar_id":"","url":"https://api.github.com/users/StanczakDominik","html_url":"https://github.com/StanczakDominik","followers_url":"https://api.github.com/users/StanczakDominik/followers","following_url":"https://api.github.com/users/StanczakDominik/following{/other_user}","gists_url":"https://api.github.com/users/StanczakDominik/gists{/gist_id}","starred_url":"https://api.github.com/users/StanczakDominik/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/StanczakDominik/subscriptions","organizations_url":"https://api.github.com/users/StanczakDominik/orgs","repos_url":"https://api.github.com/users/StanczakDominik/repos","events_url":"https://api.github.com/users/StanczakDominik/events{/privacy}","received_events_url":"https://api.github.com/users/StanczakDominik/received_events","type":"User","site_admin":false},"body":"I've been reading a bit on the Numpydoc standard. Apparently it's supposed to be readable and concise first, and pretty (with Sphinx, links) etc. second.\r\n\r\nWhoops, I guess.\r\n\r\nApparently Numpy has a whole bunch of preprocessors set up on their docstrings to prettify them\r\nbefore sending them to Sphinx to get rendered. It's an interesting technique we might have to look into some time. For now, let's keep things this way.\r\n\r\nAnyway, to the point... it's linked literally two lines above. I think people will manage.\r\n\r\nI did fix the whitespace in here a bit, though, so thanks!","created_at":"2018-03-30T04:35:22Z","updated_at":"2018-03-30T04:35:22Z","html_url":"https://github.com/PlasmaPy/PlasmaPy/pull/303#discussion_r178231395","pull_request_url":"https://api.github.com/repos/PlasmaPy/PlasmaPy/pulls/303","author_association":"OWNER","_links":{"self":{"href":"https://api.github.com/repos/PlasmaPy/PlasmaPy/pulls/comments/178231395"},"html":{"href":"https://github.com/PlasmaPy/PlasmaPy/pull/303#discussion_r178231395"},"pull_request":{"href":"https://api.github.com/repos/PlasmaPy/PlasmaPy/pulls/303"}},"in_reply_to_id":178166853},"pull_request":{"url":"https://api.github.com/repos/PlasmaPy/PlasmaPy/pulls/303","id":174785774,"html_url":"https://github.com/PlasmaPy/PlasmaPy/pull/303","diff_url":"https://github.com/PlasmaPy/PlasmaPy/pull/303.diff","patch_url":"https://github.com/PlasmaPy/PlasmaPy/pull/303.patch","issue_url":"https://api.github.com/repos/PlasmaPy/PlasmaPy/issues/303","number":303,"state":"open","locked":false,"title":"Code review fixes for plasma parameters and transport","user":{"login":"StanczakDominik","id":11289391,"avatar_url":"https://avatars0.githubusercontent.com/u/11289391?v=4","gravatar_id":"","url":"https://api.github.com/users/StanczakDominik","html_url":"https://github.com/StanczakDominik","followers_url":"https://api.github.com/users/StanczakDominik/followers","following_url":"https://api.github.com/users/StanczakDominik/following{/other_user}","gists_url":"https://api.github.com/users/StanczakDominik/gists{/gist_id}","starred_url":"https://api.github.com/users/StanczakDominik/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/StanczakDominik/subscriptions","organizations_url":"https://api.github.com/users/StanczakDominik/orgs","repos_url":"https://api.github.com/users/StanczakDominik/repos","events_url":"https://api.github.com/users/StanczakDominik/events{/privacy}","received_events_url":"https://api.github.com/users/StanczakDominik/received_events","type":"User","site_admin":false},"body":"This is a work in progress PR to address changes suggested here: https://docs.google.com/document/d/1EcuxYoSzy-MpjjjqBE3E6zE8g6xYU2BH1MorU7_DQQA/edit?usp=sharing I'm currently dealing with the changes marked as red.\r\n\r\nChecklist:\r\n* [x] Finish replacing _check_quantity with @check_quantity\r\n* [x] Move large initial docstring to documentation\r\n* [x] Remove default ion (“p+” atm) because fusion and astro people are NOT going to agree on default (except plasma freq)\r\n* [x] Pass this file through pydoc/codestyle\r\n* [x] L186 shouldn’t make assumption that Z = 1\r\n* [x] L181 remove default for Z\r\n* [x] Functionify: Number density/mass density 177-194, Choose between Z and m_i 179-191\r\n* [x] Condense 340-345, Create a function for checking specific heat (gamma_{e,i}) ratios?\r\n* [ ] Collision_rate_electron_ion - Replace both of these with collision_frequency from transport - just verify that collision_frequency gives the same or very similar results for tests\r\n* [x] Gyrofrequency - Link to int documentation via `` backticks, Z instead of z_mean in arguments\r\n* [x] Gyroradius - Nick being nice circa 2017! Let’s replace things here with the decorators.\r\n* [x] Debye_length Docstring: Calculate the exponential scale length for charge screening\r\n* [x] Debye_length Replace ** with np.sqrt\r\n* [x] Debye_length Remove try block. These pop up elsewhere, remove them there too!\r\n* [x] Debye_length Put backticks into  “If either argument is not a ~astropy.units.Quantity” because that text is inline\r\n* [x] Debye_number: 1136: +/- one too many backticks\r\n* [ ] Good first contribution issue: fix backtickable references in docstrings\r\n* [x] Upper/lower hybrid frequencies: Do not need try blocks\r\n* [x] Make sure there's no duplicates between physics and transport init 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