{"action":"created","issue":{"url":"https://api.github.com/repos/cancerit/CaVEMan/issues/80","repository_url":"https://api.github.com/repos/cancerit/CaVEMan","labels_url":"https://api.github.com/repos/cancerit/CaVEMan/issues/80/labels{/name}","comments_url":"https://api.github.com/repos/cancerit/CaVEMan/issues/80/comments","events_url":"https://api.github.com/repos/cancerit/CaVEMan/issues/80/events","html_url":"https://github.com/cancerit/CaVEMan/issues/80","id":314088576,"number":80,"title":"Error when executing split command","user":{"login":"MeganDruce","id":11156679,"avatar_url":"https://avatars2.githubusercontent.com/u/11156679?v=4","gravatar_id":"","url":"https://api.github.com/users/MeganDruce","html_url":"https://github.com/MeganDruce","followers_url":"https://api.github.com/users/MeganDruce/followers","following_url":"https://api.github.com/users/MeganDruce/following{/other_user}","gists_url":"https://api.github.com/users/MeganDruce/gists{/gist_id}","starred_url":"https://api.github.com/users/MeganDruce/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MeganDruce/subscriptions","organizations_url":"https://api.github.com/users/MeganDruce/orgs","repos_url":"https://api.github.com/users/MeganDruce/repos","events_url":"https://api.github.com/users/MeganDruce/events{/privacy}","received_events_url":"https://api.github.com/users/MeganDruce/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-04-13T12:30:02Z","updated_at":"2018-04-27T08:37:03Z","closed_at":null,"author_association":"NONE","body":"Hi!\r\n\r\nI have been trying to run CaVEMan on a few of my WGS samples but each time I run the split command I get this strange error:\r\n\r\ncaveman split -i 1 -f /home/druce/caveman.cfg.ini\r\nFound chr: 1 of length: 195471971 at index 1\r\n*** Error in `caveman': free(): invalid next size (fast): 0x0000000001f0b250 ***\r\n*** Error in `caveman': malloc(): memory corruption: 0x0000000001f0b290 ***\r\n\r\nI have tried looking into this error but cannot figure out a way to solve it.  Do you have any advice?  I'm using CaVEMan version 1.13.1."},"comment":{"url":"https://api.github.com/repos/cancerit/CaVEMan/issues/comments/384904741","html_url":"https://github.com/cancerit/CaVEMan/issues/80#issuecomment-384904741","issue_url":"https://api.github.com/repos/cancerit/CaVEMan/issues/80","id":384904741,"user":{"login":"drjsanger","id":7935268,"avatar_url":"https://avatars2.githubusercontent.com/u/7935268?v=4","gravatar_id":"","url":"https://api.github.com/users/drjsanger","html_url":"https://github.com/drjsanger","followers_url":"https://api.github.com/users/drjsanger/followers","following_url":"https://api.github.com/users/drjsanger/following{/other_user}","gists_url":"https://api.github.com/users/drjsanger/gists{/gist_id}","starred_url":"https://api.github.com/users/drjsanger/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/drjsanger/subscriptions","organizations_url":"https://api.github.com/users/drjsanger/orgs","repos_url":"https://api.github.com/users/drjsanger/repos","events_url":"https://api.github.com/users/drjsanger/events{/privacy}","received_events_url":"https://api.github.com/users/drjsanger/received_events","type":"User","site_admin":false},"created_at":"2018-04-27T08:37:02Z","updated_at":"2018-04-27T08:37:02Z","author_association":"CONTRIBUTOR","body":"Hi @MeganDruce do you have `valgrind` installed? It may give a more useful output to try and track down the location of this error. You run it as `valgrind caveman <rest of command>`. "}}
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