{"action":"created","issue":{"url":"https://api.github.com/repos/davidaknowles/suez/issues/3","repository_url":"https://api.github.com/repos/davidaknowles/suez","labels_url":"https://api.github.com/repos/davidaknowles/suez/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/davidaknowles/suez/issues/3/comments","events_url":"https://api.github.com/repos/davidaknowles/suez/issues/3/events","html_url":"https://github.com/davidaknowles/suez/issues/3","id":369821783,"node_id":"MDU6SXNzdWUzNjk4MjE3ODM=","number":3,"title":"Error in map_interaction_qtl","user":{"login":"ivlachos","id":27241130,"node_id":"MDQ6VXNlcjI3MjQxMTMw","avatar_url":"https://avatars1.githubusercontent.com/u/27241130?v=4","gravatar_id":"","url":"https://api.github.com/users/ivlachos","html_url":"https://github.com/ivlachos","followers_url":"https://api.github.com/users/ivlachos/followers","following_url":"https://api.github.com/users/ivlachos/following{/other_user}","gists_url":"https://api.github.com/users/ivlachos/gists{/gist_id}","starred_url":"https://api.github.com/users/ivlachos/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ivlachos/subscriptions","organizations_url":"https://api.github.com/users/ivlachos/orgs","repos_url":"https://api.github.com/users/ivlachos/repos","events_url":"https://api.github.com/users/ivlachos/events{/privacy}","received_events_url":"https://api.github.com/users/ivlachos/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-10-13T17:13:29Z","updated_at":"2018-10-13T20:17:18Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nStep 1 finished correctly and then used the kernel to map eQTLs.\r\n\r\nThe process seems to be passing correctly different milestones (I had to add a few utility functions from dox that were missing) but ends with an error:\r\n\r\n[a great number of genes and variants examined, all with normal termination]\r\n....\r\n....\r\nOptimization terminated normally: \r\n  Convergence detected: relative gradient magnitude is below tolerance\r\n\r\nError in { : \r\n  task 1 failed - \"task 1 failed - \"invalid 'length' argument\"\"\r\nCalls: map_interaction_qtl -> %do% -> <Anonymous>\r\n\r\nAny ideas?"},"comment":{"url":"https://api.github.com/repos/davidaknowles/suez/issues/comments/429572010","html_url":"https://github.com/davidaknowles/suez/issues/3#issuecomment-429572010","issue_url":"https://api.github.com/repos/davidaknowles/suez/issues/3","id":429572010,"node_id":"MDEyOklzc3VlQ29tbWVudDQyOTU3MjAxMA==","user":{"login":"davidaknowles","id":4521734,"node_id":"MDQ6VXNlcjQ1MjE3MzQ=","avatar_url":"https://avatars1.githubusercontent.com/u/4521734?v=4","gravatar_id":"","url":"https://api.github.com/users/davidaknowles","html_url":"https://github.com/davidaknowles","followers_url":"https://api.github.com/users/davidaknowles/followers","following_url":"https://api.github.com/users/davidaknowles/following{/other_user}","gists_url":"https://api.github.com/users/davidaknowles/gists{/gist_id}","starred_url":"https://api.github.com/users/davidaknowles/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davidaknowles/subscriptions","organizations_url":"https://api.github.com/users/davidaknowles/orgs","repos_url":"https://api.github.com/users/davidaknowles/repos","events_url":"https://api.github.com/users/davidaknowles/events{/privacy}","received_events_url":"https://api.github.com/users/davidaknowles/received_events","type":"User","site_admin":false},"created_at":"2018-10-13T20:17:18Z","updated_at":"2018-10-13T20:17:18Z","author_association":"OWNER","body":"Ok thanks, I guess I had `utils.R` from dox sourced when testing `suez`. I'll work out what needs adding. \r\n\r\nStan based packages access the compiled stan models through `stanmodels`, which is private... but one of the good/bad things about R is you can still access private package functions/members using :::, so `suez:::stanmodels$suez_step_2` is what you can pass to optimizing. "}}
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