{"push_id":2922988177,"size":10,"distinct_size":3,"ref":"refs/heads/rust_sig","head":"2f4981cee95162fa7d9a67dc284a867c571c8347","before":"599a4090bf1d3c047ffaa3d8159706436bcb273d","commits":[{"sha":"12aa76f0a08e5b702d927eed7185a87277af2b51","author":{"name":"C. Titus Brown","email":"f3fd4bd48efc01ac5c6bf9fe8097a251c408143a@idyll.org"},"message":"fix print_results output of compare to print out symmetric matrix (#536)","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/12aa76f0a08e5b702d927eed7185a87277af2b51"},{"sha":"3ffac2df8aa86324ca170e08949b32cf03833873","author":{"name":"Olga Botvinnik","email":"c6ee48ed20917be7e22e0212548b3509c5357c3e@gmail.com"},"message":"Explicitly state default thresholds in help text (#540)","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/3ffac2df8aa86324ca170e08949b32cf03833873"},{"sha":"c20275087dd1c8ef9bb9cdb228cd08627ac68215","author":{"name":"Olga Botvinnik","email":"c6ee48ed20917be7e22e0212548b3509c5357c3e@gmail.com"},"message":"Add --ignore-abundance to \"search\" and \"categorize\" (#543)\n\n* Add ignore_abundance to search_databases\r\n* Add ignore_abundnance to search and categorize\r\n* Containment cannot ignore abundance\r\n* Add note about abundance vs containment\r\n* Add assertion to make sure --ignore-abundance flag produces different results\r\n* Use signatures with abundance for categorize test","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/c20275087dd1c8ef9bb9cdb228cd08627ac68215"},{"sha":"253498968508cac01c3e91e5b662173bb36ae199","author":{"name":"Olga Botvinnik","email":"c6ee48ed20917be7e22e0212548b3509c5357c3e@gmail.com"},"message":"use X if codon not found (#529)\n\n* Use std::map::find to get codons and use X if not found\r\n* Add test fasta with Ns","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/253498968508cac01c3e91e5b662173bb36ae199"},{"sha":"05584d2ed0dbf3f071d4a5db712bb6538119c91d","author":{"name":"Olga Botvinnik","email":"c6ee48ed20917be7e22e0212548b3509c5357c3e@gmail.com"},"message":"Generate signatures from 10x single cell bam file (#539)\n\n* Add reading 10x bam files\r\n* Add threads to arguments\r\n* Add pathos and bamnostic to requirements\r\n* Skip 10x test only if bamnostic not installed","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/05584d2ed0dbf3f071d4a5db712bb6538119c91d"},{"sha":"87118391ce763d92a6cec6ef2c5ff37bb67e833d","author":{"name":"Luiz Irber","email":"20416e5f7fff7923d94b3a5de93a8d1fb0125574@users.noreply.github.com"},"message":"make 10x support optional (#550)","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/87118391ce763d92a6cec6ef2c5ff37bb67e833d"},{"sha":"7b62da91dc109dcaf8cbcdd104e744714278ed3c","author":{"name":"Luiz Irber","email":"20416e5f7fff7923d94b3a5de93a8d1fb0125574@users.noreply.github.com"},"message":"Fix JSON loading (#546)\n\n* fix deprecation warning\r\n* fallback\r\n* avoid ipfs daemon messages\r\n* install yajl2 on travis\r\n* fix warnings and clean up pytest output\r\n* new test for textmode file\r\n* fix test target in makefile\r\n* add py37","distinct":false,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/7b62da91dc109dcaf8cbcdd104e744714278ed3c"},{"sha":"f111d85dcf050223d1a2e73b71b9e445141ee03e","author":{"name":"Luiz Irber","email":"5523865f25db55c8c26eb97083e3827020806ab4@gmail.com"},"message":"Replacing C++ with Rust\n\nExpose rust merge and add intersection\nUpdate cbindgen, uncomment more code\nScaffolding for error catching\nAdd rust bindings as a submodule\nexception handling working\nImplement abundances\nUse __eq__ instead of __richcmp__\nmax hash should be an int\nAvoid init_once too many times, remove third-party\navoid get_mins in add_many calls\nread mins buffer instead of item by item\nUse buffers for abunds too","distinct":true,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/f111d85dcf050223d1a2e73b71b9e445141ee03e"},{"sha":"d32e2fc45d0ffda4200cc5fae2f75755bbba90b6","author":{"name":"Luiz Irber","email":"5523865f25db55c8c26eb97083e3827020806ab4@gmail.com"},"message":"bump sourmash-rust","distinct":true,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/d32e2fc45d0ffda4200cc5fae2f75755bbba90b6"},{"sha":"2f4981cee95162fa7d9a67dc284a867c571c8347","author":{"name":"Luiz Irber","email":"5523865f25db55c8c26eb97083e3827020806ab4@gmail.com"},"message":"Moving loading and save sigs to rust\n\nmove json parsing and init to rust\nworking on loading sigs\n\n55 failing. Now it's failing because SBT index is saving all signatures\n(instead of only the one it was used to build the tree).\nThis was actually a feature (see #198) but it broke the SBT code\n(it wasn't ready for that!)","distinct":true,"url":"https://api.github.com/repos/dib-lab/sourmash/commits/2f4981cee95162fa7d9a67dc284a867c571c8347"}]}
{"actor":{"display_login":"luizirber"}}