{"action":"created","issue":{"url":"https://api.github.com/repos/ropensci/EML/issues/247","repository_url":"https://api.github.com/repos/ropensci/EML","labels_url":"https://api.github.com/repos/ropensci/EML/issues/247/labels{/name}","comments_url":"https://api.github.com/repos/ropensci/EML/issues/247/comments","events_url":"https://api.github.com/repos/ropensci/EML/issues/247/events","html_url":"https://github.com/ropensci/EML/issues/247","id":362374948,"node_id":"MDU6SXNzdWUzNjIzNzQ5NDg=","number":247,"title":"inconsistency with R v3.5.1","user":{"login":"fawda123","id":3086881,"node_id":"MDQ6VXNlcjMwODY4ODE=","avatar_url":"https://avatars3.githubusercontent.com/u/3086881?v=4","gravatar_id":"","url":"https://api.github.com/users/fawda123","html_url":"https://github.com/fawda123","followers_url":"https://api.github.com/users/fawda123/followers","following_url":"https://api.github.com/users/fawda123/following{/other_user}","gists_url":"https://api.github.com/users/fawda123/gists{/gist_id}","starred_url":"https://api.github.com/users/fawda123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fawda123/subscriptions","organizations_url":"https://api.github.com/users/fawda123/orgs","repos_url":"https://api.github.com/users/fawda123/repos","events_url":"https://api.github.com/users/fawda123/events{/privacy}","received_events_url":"https://api.github.com/users/fawda123/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-09-20T21:29:11Z","updated_at":"2018-09-21T01:14:50Z","closed_at":"2018-09-20T23:46:27Z","author_association":"NONE","body":"Hi there, \r\n\r\nI'm attempting to create a simple EML file and am noticing different behavior on different platforms.  My current windows machine runs R3.5.1 and I'm seeing this in the console:\r\n\r\n```r\r\nlibrary(EML)\r\nf <- system.file(\"examples/hf205-methods.md\", package = \"EML\")\r\nset_methods(methods_file = f)\r\n# <methods/>\r\n```\r\n\r\nWhen I run the same on the NCEAS aurora server (R v3.4.4) I get the methods as expected:\r\n\r\n```r\r\nf <- system.file(\"examples/hf205-methods.md\", package = \"EML\")\r\nset_methods(methods_file = f)\r\n# <methods>\r\n#  <methodStep>\r\n#   <description>\r\n#    <section>\r\n#       <title>General Protocols</title>\r\n#      <para>\r\n#    Field methods. All experiments will be carried out in the greenhouse\r\n#    at Harvard Forest. We have developed an instrumentation system that\r\n#   allows us to collect continuous dissolved [O2] measurements:\r\n# etc.\r\n```\r\n\r\nAs far as I can tell, the only thing that differs between the two systems is the R version and OS.\r\n\r\nMine:\r\n```r\r\n> sessionInfo()\r\nR version 3.5.1 (2018-07-02)\r\nPlatform: x86_64-w64-mingw32/x64 (64-bit)\r\nRunning under: Windows >= 8 x64 (build 9200)\r\n\r\nMatrix products: default\r\n\r\nlocale:\r\n[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252\r\n[4] LC_NUMERIC=C                           LC_TIME=English_United States.1252    \r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices utils     datasets  methods   base     \r\n\r\nother attached packages:\r\n[1] EML_1.0.3\r\n\r\nloaded via a namespace (and not attached):\r\n [1] Rcpp_0.12.18     knitr_1.20       bindr_0.1.1      xml2_1.2.0       magrittr_1.5     tidyselect_0.2.4 uuid_0.1-2      \r\n [8] R6_2.2.2         rlang_0.2.0      stringr_1.3.1    dplyr_0.7.6      tools_3.5.1      htmltools_0.3.6  yaml_2.1.18     \r\n[15] assertthat_0.2.0 digest_0.6.17    rprojroot_1.3-2  tibble_1.4.2     bindrcpp_0.2.2   purrr_0.2.5      glue_1.3.0      \r\n[22] evaluate_0.10.1  rmarkdown_1.9    stringi_1.1.7    compiler_3.5.1   pillar_1.2.1     backports_1.1.2  pkgconfig_2.0.1\r\n```\r\nNCEAS:\r\n```r\r\n> sessionInfo()\r\nR version 3.4.4 (2018-03-15)\r\nPlatform: x86_64-pc-linux-gnu (64-bit)\r\nRunning under: Ubuntu 16.04.5 LTS\r\n\r\nMatrix products: default\r\nBLAS: /usr/lib/atlas-base/atlas/libblas.so.3.0\r\nLAPACK: /usr/lib/atlas-base/atlas/liblapack.so.3.0\r\n\r\nlocale:\r\n [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    \r\n [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8       LC_NAME=C                 \r\n [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       \r\n\r\nattached base packages:\r\n[1] stats     graphics  grDevices utils     datasets  methods   base     \r\n\r\nother attached packages:\r\n[1] EML_1.0.3\r\n\r\nloaded via a namespace (and not attached):\r\n[1] compiler_3.4.4 tools_3.4.4    yaml_2.1.18    Rcpp_0.12.15   uuid_0.1-2     xml2_1.2.0    \r\n```\r\n\r\nAm I missing something here?\r\n"},"comment":{"url":"https://api.github.com/repos/ropensci/EML/issues/comments/423382719","html_url":"https://github.com/ropensci/EML/issues/247#issuecomment-423382719","issue_url":"https://api.github.com/repos/ropensci/EML/issues/247","id":423382719,"node_id":"MDEyOklzc3VlQ29tbWVudDQyMzM4MjcxOQ==","user":{"login":"fawda123","id":3086881,"node_id":"MDQ6VXNlcjMwODY4ODE=","avatar_url":"https://avatars3.githubusercontent.com/u/3086881?v=4","gravatar_id":"","url":"https://api.github.com/users/fawda123","html_url":"https://github.com/fawda123","followers_url":"https://api.github.com/users/fawda123/followers","following_url":"https://api.github.com/users/fawda123/following{/other_user}","gists_url":"https://api.github.com/users/fawda123/gists{/gist_id}","starred_url":"https://api.github.com/users/fawda123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fawda123/subscriptions","organizations_url":"https://api.github.com/users/fawda123/orgs","repos_url":"https://api.github.com/users/fawda123/repos","events_url":"https://api.github.com/users/fawda123/events{/privacy}","received_events_url":"https://api.github.com/users/fawda123/received_events","type":"User","site_admin":false},"created_at":"2018-09-21T01:14:50Z","updated_at":"2018-09-21T01:14:50Z","author_association":"NONE","body":"Good stuff, I'm looking to start using these tools more as part of my standard workflow.  Will keep an eye on progress!"}}
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