{"action":"closed","issue":{"url":"https://api.github.com/repos/qiaseq/qiaseq-smcounter-v2/issues/6","repository_url":"https://api.github.com/repos/qiaseq/qiaseq-smcounter-v2","labels_url":"https://api.github.com/repos/qiaseq/qiaseq-smcounter-v2/issues/6/labels{/name}","comments_url":"https://api.github.com/repos/qiaseq/qiaseq-smcounter-v2/issues/6/comments","events_url":"https://api.github.com/repos/qiaseq/qiaseq-smcounter-v2/issues/6/events","html_url":"https://github.com/qiaseq/qiaseq-smcounter-v2/issues/6","id":334086037,"node_id":"MDU6SXNzdWUzMzQwODYwMzc=","number":6,"title":"required flags for the input BAM file","user":{"login":"smzt","id":32428329,"node_id":"MDQ6VXNlcjMyNDI4MzI5","avatar_url":"https://avatars3.githubusercontent.com/u/32428329?v=4","gravatar_id":"","url":"https://api.github.com/users/smzt","html_url":"https://github.com/smzt","followers_url":"https://api.github.com/users/smzt/followers","following_url":"https://api.github.com/users/smzt/following{/other_user}","gists_url":"https://api.github.com/users/smzt/gists{/gist_id}","starred_url":"https://api.github.com/users/smzt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/smzt/subscriptions","organizations_url":"https://api.github.com/users/smzt/orgs","repos_url":"https://api.github.com/users/smzt/repos","events_url":"https://api.github.com/users/smzt/events{/privacy}","received_events_url":"https://api.github.com/users/smzt/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-06-20T13:46:36Z","updated_at":"2018-10-03T19:12:00Z","closed_at":"2018-10-03T19:12:00Z","author_association":"NONE","body":"Dear developers,\r\nI'd like to know which are the specific format requirements (i.e. required flags and their format) to use smcounter2 as the variant caller for a BAM file that has been obtained with other tools.\r\n\r\nBest regards,\r\n\r\nSheila"}}
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