{"action":"created","issue":{"url":"https://api.github.com/repos/MatchmakerExchange/reference-server/issues/9","repository_url":"https://api.github.com/repos/MatchmakerExchange/reference-server","labels_url":"https://api.github.com/repos/MatchmakerExchange/reference-server/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/MatchmakerExchange/reference-server/issues/9/comments","events_url":"https://api.github.com/repos/MatchmakerExchange/reference-server/issues/9/events","html_url":"https://github.com/MatchmakerExchange/reference-server/issues/9","id":363064904,"node_id":"MDU6SXNzdWUzNjMwNjQ5MDQ=","number":9,"title":"benchmark_patients.json not found","user":{"login":"northwestwitch","id":28093618,"node_id":"MDQ6VXNlcjI4MDkzNjE4","avatar_url":"https://avatars0.githubusercontent.com/u/28093618?v=4","gravatar_id":"","url":"https://api.github.com/users/northwestwitch","html_url":"https://github.com/northwestwitch","followers_url":"https://api.github.com/users/northwestwitch/followers","following_url":"https://api.github.com/users/northwestwitch/following{/other_user}","gists_url":"https://api.github.com/users/northwestwitch/gists{/gist_id}","starred_url":"https://api.github.com/users/northwestwitch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/northwestwitch/subscriptions","organizations_url":"https://api.github.com/users/northwestwitch/orgs","repos_url":"https://api.github.com/users/northwestwitch/repos","events_url":"https://api.github.com/users/northwestwitch/events{/privacy}","received_events_url":"https://api.github.com/users/northwestwitch/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-09-24T09:10:35Z","updated_at":"2018-09-25T09:52:06Z","closed_at":null,"author_association":"NONE","body":"Hi! I'm trying to set up a mme server for my institution and this reference-server looks like a good starting point!\r\nWhile following the instructions I get stuck at the command\r\n``mme-server quickstart`` \r\n\r\nwhere I get this error message:\r\n\r\nINFO:mme_server.cli:Downloading file from: https://raw.githubusercontent.com/ga4gh/mme-apis/hotfix/v1.0b/testing/benchmark_patients.json\r\nTraceback (most recent call last):\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/bin/mme-server\", line 11, in <module>\r\n    load_entry_point('mme-server', 'console_scripts', 'mme-server')()\r\n  File \"/Users/chiararasi/Documents/work/GITs/reference-server/mme_server/cli.py\", line 221, in main\r\n    function(**kwargs)\r\n  File \"/Users/chiararasi/Documents/work/GITs/reference-server/mme_server/cli.py\", line 53, in quickstart\r\n    index_file('patients', data_filename, data_url)\r\n  File \"/Users/chiararasi/Documents/work/GITs/reference-server/mme_server/cli.py\", line 57, in index_file\r\n    fetch_resource(filename, url)\r\n  File \"/Users/chiararasi/Documents/work/GITs/reference-server/mme_server/cli.py\", line 76, in fetch_resource\r\n    urlretrieve(url, filename)\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 248, in urlretrieve\r\n    with contextlib.closing(urlopen(url, data)) as fp:\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 223, in urlopen\r\n    return opener.open(url, data, timeout)\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 532, in open\r\n    response = meth(req, response)\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 642, in http_response\r\n    'http', request, response, code, msg, hdrs)\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 570, in error\r\n    return self._call_chain(*args)\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 504, in _call_chain\r\n    result = func(*args)\r\n  File \"/Users/chiararasi/miniconda3/envs/py36/lib/python3.6/urllib/request.py\", line 650, in http_error_default\r\n    raise HTTPError(req.full_url, code, msg, hdrs, fp)\r\nurllib.error.HTTPError: HTTP Error 404: Not Found\r\n\r\nCould it be that benchmark_patients.json was removed or renamed?\r\n\r\nThanks in advance! \r\nChiara"},"comment":{"url":"https://api.github.com/repos/MatchmakerExchange/reference-server/issues/comments/424278962","html_url":"https://github.com/MatchmakerExchange/reference-server/issues/9#issuecomment-424278962","issue_url":"https://api.github.com/repos/MatchmakerExchange/reference-server/issues/9","id":424278962,"node_id":"MDEyOklzc3VlQ29tbWVudDQyNDI3ODk2Mg==","user":{"login":"Relequestual","id":731158,"node_id":"MDQ6VXNlcjczMTE1OA==","avatar_url":"https://avatars3.githubusercontent.com/u/731158?v=4","gravatar_id":"","url":"https://api.github.com/users/Relequestual","html_url":"https://github.com/Relequestual","followers_url":"https://api.github.com/users/Relequestual/followers","following_url":"https://api.github.com/users/Relequestual/following{/other_user}","gists_url":"https://api.github.com/users/Relequestual/gists{/gist_id}","starred_url":"https://api.github.com/users/Relequestual/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Relequestual/subscriptions","organizations_url":"https://api.github.com/users/Relequestual/orgs","repos_url":"https://api.github.com/users/Relequestual/repos","events_url":"https://api.github.com/users/Relequestual/events{/privacy}","received_events_url":"https://api.github.com/users/Relequestual/received_events","type":"User","site_admin":false},"created_at":"2018-09-25T09:52:06Z","updated_at":"2018-09-25T09:52:06Z","author_association":"MEMBER","body":"This may be due to not using a specific version of HPO for the tests.\r\nUnfortunatly, I don't know if this reference server is maintained or not. Will wait to hear back from @buske "}}
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