{"action":"created","issue":{"url":"https://api.github.com/repos/sferes2/sferes2/issues/71","repository_url":"https://api.github.com/repos/sferes2/sferes2","labels_url":"https://api.github.com/repos/sferes2/sferes2/issues/71/labels{/name}","comments_url":"https://api.github.com/repos/sferes2/sferes2/issues/71/comments","events_url":"https://api.github.com/repos/sferes2/sferes2/issues/71/events","html_url":"https://github.com/sferes2/sferes2/issues/71","id":293416810,"number":71,"title":"The ./waf check fails after successful build and configure","user":{"login":"Nicholas-J-Sabaj","id":13217196,"avatar_url":"https://avatars1.githubusercontent.com/u/13217196?v=4","gravatar_id":"","url":"https://api.github.com/users/Nicholas-J-Sabaj","html_url":"https://github.com/Nicholas-J-Sabaj","followers_url":"https://api.github.com/users/Nicholas-J-Sabaj/followers","following_url":"https://api.github.com/users/Nicholas-J-Sabaj/following{/other_user}","gists_url":"https://api.github.com/users/Nicholas-J-Sabaj/gists{/gist_id}","starred_url":"https://api.github.com/users/Nicholas-J-Sabaj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Nicholas-J-Sabaj/subscriptions","organizations_url":"https://api.github.com/users/Nicholas-J-Sabaj/orgs","repos_url":"https://api.github.com/users/Nicholas-J-Sabaj/repos","events_url":"https://api.github.com/users/Nicholas-J-Sabaj/events{/privacy}","received_events_url":"https://api.github.com/users/Nicholas-J-Sabaj/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":11,"created_at":"2018-02-01T06:22:46Z","updated_at":"2018-02-03T21:35:01Z","closed_at":null,"author_association":"NONE","body":"After successfully finishing the **./waf configure** and the **./waf build**, I try **./waf check**, which returns a successful line:\r\n**Command-line options for exp [exp/example] :  -> OK** \r\nfollowed immediately by a failure:\r\n**No function check defined in /home/nick/Desktop/sferes2-master/wscript**\r\nWhat do you think I should do? I'm at a loss."},"comment":{"url":"https://api.github.com/repos/sferes2/sferes2/issues/comments/362856236","html_url":"https://github.com/sferes2/sferes2/issues/71#issuecomment-362856236","issue_url":"https://api.github.com/repos/sferes2/sferes2/issues/71","id":362856236,"user":{"login":"Nicholas-J-Sabaj","id":13217196,"avatar_url":"https://avatars1.githubusercontent.com/u/13217196?v=4","gravatar_id":"","url":"https://api.github.com/users/Nicholas-J-Sabaj","html_url":"https://github.com/Nicholas-J-Sabaj","followers_url":"https://api.github.com/users/Nicholas-J-Sabaj/followers","following_url":"https://api.github.com/users/Nicholas-J-Sabaj/following{/other_user}","gists_url":"https://api.github.com/users/Nicholas-J-Sabaj/gists{/gist_id}","starred_url":"https://api.github.com/users/Nicholas-J-Sabaj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Nicholas-J-Sabaj/subscriptions","organizations_url":"https://api.github.com/users/Nicholas-J-Sabaj/orgs","repos_url":"https://api.github.com/users/Nicholas-J-Sabaj/repos","events_url":"https://api.github.com/users/Nicholas-J-Sabaj/events{/privacy}","received_events_url":"https://api.github.com/users/Nicholas-J-Sabaj/received_events","type":"User","site_admin":false},"created_at":"2018-02-03T21:35:01Z","updated_at":"2018-02-03T21:35:01Z","author_association":"NONE","body":"Sorry, how do you install that? I tried terminal installation, Synaptic,\nand the default Software package manager. None of it fixed the error. I\nwouldn't bother mentioning it as I don't want to over-use your time, but I\ndo think this will be helpful for future users.\n\nOn Sat, Feb 3, 2018 at 1:46 AM, JB Mouret <notifications@github.com> wrote:\n\n> Did you install it with the Ubuntu packages? I believe you also need to\n> install the boost-mpi package:\n> https://packages.ubuntu.com/bionic/libboost-mpi1.65-dev\n>\n>\n> On Sat, Feb 3, 2018, 06:51 Nick Sabaj <notifications@github.com> wrote:\n>\n> > Yes, the version I'm using now is 1.66; that's the version which is\n> giving\n> > me MPI issues. What Boost version do you use, and how do you suggest\n> > resolving the MPI issue?\n> >\n> > On Feb 2, 2018 11:42 PM, \"JB Mouret\" <notifications@github.com> wrote:\n> >\n> > Any other version of boost should work. They introduced a bug in 1.58\n> that\n> > was corrected in 1.58. We are using more recent versions but an older\n> > version should work.\n> >\n> > MPI is not useful on a single computer (but tbb). The issue is that the\n> > recent libboost in Ubuntu does not include the boost-mpi library (to\n> avoid\n> > the openmpi reps).\n> >\n> >\n> > On Sat, Feb 3, 2018, 05:54 Nick Sabaj <notifications@github.com> wrote:\n> >\n> > > Ok, now the tests succeed, but I tried ./waf configure again, and I got\n> > the\n> > > following error:\n> > >\n> > > Checking boost includes : 1_58\n> > > Checking boost libs : lib mpi not found in lib\n> > > (complete log in /home/nick/Desktop/sferes2/build/config.log)\n> > >\n> > > So this is probably ok, but I wanted you to know of that hiccup, in\n> case\n> > it\n> > > portends disaster. I'm only currently using my laptop for this, so MPI\n> > > might not be an issue at the moment, but we'll probably be scaling up\n> to\n> > a\n> > > cluster shortly after we get this running on a laptop.\n> > >\n> > > These\n> > > <\n> > > https://askubuntu.com/questions/859333/how-to-\n> > install-libboost-version1-59-or-newer-on-ubuntu16-04\n> >\n> > > >\n> > > instructions seemed to fix things, btw. The instructions also mentioned\n> > > rebuilding Ubuntu to a more recent version, but I haven't done that yet\n> > as\n> > > the tests passed and I wanted to make sure that wouldn't muddy the\n> waters\n> > > of troubleshooting for future users with this issue. Current plan is to\n> > try\n> > > playing around with sferes, and see if it crashes, unless you indicate\n> > that\n> > > the MPI is critical, and might be worth exploring.\n> > >\n> > > On Fri, Feb 2, 2018 at 7:15 PM, Nick Sabaj <cthulu42sabaj@gmail.com>\n> > > wrote:\n> > >\n> > > > The comments in bit_string.hpp specify to not use version 1.58 of\n> > Boost,\n> > > > but don't say what version of Boost is known to work.\n> > > >\n> > > > On Fri, Feb 2, 2018 at 7:10 PM, Nick Sabaj <cthulu42sabaj@gmail.com>\n> > > > wrote:\n> > > >\n> > > >> Currently using 1.58\n> > > >> Sorry for the slow response- delayed throughout the day until now.\n> > > >> Which Boost version should I use? I'll check older and newer\n> versions,\n> > > >> but I'd love to know the best choice, to prevent later issues.\n> > > >>\n> > > >> On Fri, Feb 2, 2018 at 1:50 AM, JB Mouret <notifications@github.com\n> >\n> > > >> wrote:\n> > > >>\n> > > >>> Thank you. Which version of boost do you use?\n> > > >>>\n> > > >>>\n> > > >>> On Fri, Feb 2, 2018 at 8:22 AM Nick Sabaj <\n> notifications@github.com>\n> > > >>> wrote:\n> > > >>>\n> > > >>> > Hi again; the tests you specified show a single failure, a fatal\n> > > error\n> > > >>> in\n> > > >>> > \"bitstring_serialize\" and \"bitstring_serialize_long\".\n> > > >>> > I think it's related to this section I noticed in the terminal:\n> > > >>> >\n> > > >>> > [33/44] Compiling tests/gen/bit_string.cpp\n> > > >>> > In file included from ../tests/gen/bit_string.cpp:38:0:\n> > > >>> > /home/nick/Desktop/sferes2/sferes/gen/bit_string.hpp:54:3:\n> warning:\n> > > >>> > #warning DO NOT use bit_string with boost 1.58 (bug in the\n> > > >>> serialization\n> > > >>> > library) [-Wcpp]\n> > > >>> > # warning DO NOT use bit_string with boost 1.58 (bug in the\n> > > >>> serialization\n> > > >>> > library)\n> > > >>> >\n> > > >>> > Since the only failing test is tests_gen_bit_string, I think it's\n> > > >>> probably\n> > > >>> > just a boost version issue. I'll try playing around with it to\n> fix\n> > > >>> things;\n> > > >>> > I'll send you whatever the solution ends up being.\n> > > >>> >\n> > > >>> >\n> > > >>> > On Thu, Feb 1, 2018 at 10:39 AM, Nick Sabaj <\n> > cthulu42sabaj@gmail.com\n> > > >\n> > > >>> > wrote:\n> > > >>> >\n> > > >>> > > Awesome, thank you! I hope you have a wonderful day!\n> > > >>> > >\n> > > >>> > > On Thu, Feb 1, 2018 at 3:32 AM, Konstantinos Chatzilygeroudis <\n> > > >>> > > notifications@github.com> wrote:\n> > > >>> > >\n> > > >>> > >> You should run ./waf --tests to run the tests. We updated the\n> > > >>> wscript\n> > > >>> > >> (and waf) and most probably did not update the docs..!\n> > > >>> > >>\n> > > >>> > >> —\n> > > >>> > >> You are receiving this because you authored the thread.\n> > > >>> > >> Reply to this email directly, view it on GitHub\n> > > >>> > >> <https://github.com/sferes2/sferes2/issues/71#issuecomment-3\n> > > >>> 62209227>,\n> > > >>> > >> or mute the thread\n> > > >>> > >> <\n> > > >>> > https://github.com/notifications/unsubscribe-auth/AMmtrHdXXa\n> > > >>> 1kYt3adYedMdJeQJfPEsCZks5tQYSUgaJpZM4R1HPf\n> > > >>> > >\n> > > >>> > >> .\n> > > >>> > >>\n> > > >>> > >\n> > > >>> > >\n> > > >>> >\n> > > >>> > —\n> > > >>> > You are receiving this because you commented.\n> > > >>> >\n> > > >>> >\n> > > >>> > Reply to this email directly, view it on GitHub\n> > > >>> > <\n> > https://github.com/sferes2/sferes2/issues/71#issuecomment-362506799\n> > > >,\n> > > >>> or mute\n> > > >>> > the thread\n> > > >>> > <https://github.com/notifications/unsubscribe-auth/AFu8v3IPW\n> > > >>> A7y61Q6HVUhXf2bainJCuKlks5tQrfDgaJpZM4R1HPf>\n> > > >>> > .\n> > > >>> >\n> > > >>> --\n> > > >>> [ ERC ResiBots: http://www.resibots.eu ]\n> > > >>> [ Web: http://members.loria.fr/JBMouret ]\n> > > >>>\n> > > >>> —\n> > > >>> You are receiving this because you authored the thread.\n> > > >>> Reply to this email directly, view it on GitHub\n> > > >>> <https://github.com/sferes2/sferes2/issues/71#\n> issuecomment-362511625\n> > >,\n> > > >>> or mute the thread\n> > > >>> <\n> > > https://github.com/notifications/unsubscribe-auth/AMmtrJvN0VC1y_\n> > VNWHPDHGGhflBmiq65ks5tQr5dgaJpZM4R1HPf\n> >\n> > > >\n> > > >>> .\n> > > >>>\n> > > >>\n> > > >>\n> > > >\n> > >\n> > > —\n> > > You are receiving this because you commented.\n> > >\n> > >\n> > > Reply to this email directly, view it on GitHub\n> > > <https://github.com/sferes2/sferes2/issues/71#issuecomment-362780113>,\n> > or\n> > mute\n> > > the thread\n> > > <https://github.com/notifications/unsubscribe-\n> > auth/AFu8v8NDD0-93X_PMFDL0H1X-1wPYjXOks5tQ-ZigaJpZM4R1HPf>\n> >\n> > > .\n> > >\n> >\n> >\n> > --\n> > [ ERC ResiBots: http://www.resibots.eu ]\n> > [ Web: http://members.loria.fr/JBMouret ]\n> >\n> > —\n> > You are receiving this because you authored the thread.\n> > Reply to this email directly, view it on GitHub\n> > <https://github.com/sferes2/sferes2/issues/71#issuecomment-362782338>,\n> or\n> > mute\n> > the thread\n> > <\n> > https://github.com/notifications/unsubscribe-auth/\n> AMmtrE2HEriDthDzwF4BRM9zQ1WvVbhnks5tQ_GxgaJpZM4R1HPf\n> > >\n> > .\n> >\n> > —\n> > You are receiving this because you commented.\n> >\n> >\n> > Reply to this email directly, view it on GitHub\n> > <https://github.com/sferes2/sferes2/issues/71#issuecomment-362782792>,\n> or mute\n> > the thread\n> > <https://github.com/notifications/unsubscribe-auth/AFu8v1ii9419kzksR_\n> AhTDztEm1tyAHkks5tQ_PmgaJpZM4R1HPf>\n>\n> > .\n> >\n>\n>\n> --\n> [ ERC ResiBots: http://www.resibots.eu ]\n> [ Web: http://members.loria.fr/JBMouret ]\n>\n> —\n> You are receiving this because you authored the thread.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/sferes2/sferes2/issues/71#issuecomment-362787855>, or mute\n> the thread\n> <https://github.com/notifications/unsubscribe-auth/AMmtrOpUHTXjRntCgnvpKPd6oDZ4vP0sks5tRA7mgaJpZM4R1HPf>\n> .\n>\n"}}
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