{"action":"created","comment":{"url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/comments/200518445","pull_request_review_id":134851956,"id":200518445,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIwMDUxODQ0NQ==","diff_hunk":"@@ -238,7 +238,7 @@ def convert(evidence):\n \n     # association['evidence_label'] = direction\n     association = el.evidence_label(tier, association, na=False)\n-    association = ed.evidence_direction(tier, association, na=False)\n+    association = ed.evidence_direction(evidence['direction'], association, na=False)","path":"harvester/molecularmatch.py","position":5,"original_position":5,"commit_id":"552f10f2c32ae880f7dfe7a0ed070b730d0449a3","original_commit_id":"552f10f2c32ae880f7dfe7a0ed070b730d0449a3","user":{"login":"bwalsh","id":47808,"node_id":"MDQ6VXNlcjQ3ODA4","avatar_url":"https://avatars1.githubusercontent.com/u/47808?v=4","gravatar_id":"","url":"https://api.github.com/users/bwalsh","html_url":"https://github.com/bwalsh","followers_url":"https://api.github.com/users/bwalsh/followers","following_url":"https://api.github.com/users/bwalsh/following{/other_user}","gists_url":"https://api.github.com/users/bwalsh/gists{/gist_id}","starred_url":"https://api.github.com/users/bwalsh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bwalsh/subscriptions","organizations_url":"https://api.github.com/users/bwalsh/orgs","repos_url":"https://api.github.com/users/bwalsh/repos","events_url":"https://api.github.com/users/bwalsh/events{/privacy}","received_events_url":"https://api.github.com/users/bwalsh/received_events","type":"User","site_admin":false},"body":"\r\n@ahwagner  Re. molecularmatch\r\n\r\n```\r\nassociation['response_type'] = '{} {}'.format(evidence['direction'], evidence['clinicalSignificance'])\r\n``` \r\n### before\r\n![image](https://user-images.githubusercontent.com/47808/42353079-1f5adaaa-8073-11e8-9b31-dc76eb8f0afe.png)\r\n\r\n### after\r\n![image](https://user-images.githubusercontent.com/47808/42353116-59645410-8073-11e8-8900-dafac0ccd7a9.png)\r\n","created_at":"2018-07-05T23:49:36Z","updated_at":"2018-07-05T23:49:36Z","html_url":"https://github.com/ohsu-comp-bio/g2p-aggregator/pull/123#discussion_r200518445","pull_request_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123","author_association":"MEMBER","_links":{"self":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/comments/200518445"},"html":{"href":"https://github.com/ohsu-comp-bio/g2p-aggregator/pull/123#discussion_r200518445"},"pull_request":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123"}},"in_reply_to_id":199666424},"pull_request":{"url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123","id":198813093,"node_id":"MDExOlB1bGxSZXF1ZXN0MTk4ODEzMDkz","html_url":"https://github.com/ohsu-comp-bio/g2p-aggregator/pull/123","diff_url":"https://github.com/ohsu-comp-bio/g2p-aggregator/pull/123.diff","patch_url":"https://github.com/ohsu-comp-bio/g2p-aggregator/pull/123.patch","issue_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/123","number":123,"state":"open","locked":false,"title":"refine evidence_direction","user":{"login":"bwalsh","id":47808,"node_id":"MDQ6VXNlcjQ3ODA4","avatar_url":"https://avatars1.githubusercontent.com/u/47808?v=4","gravatar_id":"","url":"https://api.github.com/users/bwalsh","html_url":"https://github.com/bwalsh","followers_url":"https://api.github.com/users/bwalsh/followers","following_url":"https://api.github.com/users/bwalsh/following{/other_user}","gists_url":"https://api.github.com/users/bwalsh/gists{/gist_id}","starred_url":"https://api.github.com/users/bwalsh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bwalsh/subscriptions","organizations_url":"https://api.github.com/users/bwalsh/orgs","repos_url":"https://api.github.com/users/bwalsh/repos","events_url":"https://api.github.com/users/bwalsh/events{/privacy}","received_events_url":"https://api.github.com/users/bwalsh/received_events","type":"User","site_admin":false},"body":"Corrects evidence_direction see #122 \r\n\r\n@ahwagner  latest data pushed onto search.cancervariants.org\r\n","created_at":"2018-07-02T23:23:08Z","updated_at":"2018-07-05T23:49:36Z","closed_at":null,"merged_at":null,"merge_commit_sha":"9f87063c9326bcc4988631d8bffc00fb7cd91220","assignee":null,"assignees":[],"requested_reviewers":[],"requested_teams":[],"labels":[],"milestone":null,"commits_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123/commits","review_comments_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123/comments","review_comment_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/comments{/number}","comments_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/123/comments","statuses_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/statuses/552f10f2c32ae880f7dfe7a0ed070b730d0449a3","head":{"label":"ohsu-comp-bio:evidence_direction","ref":"evidence_direction","sha":"552f10f2c32ae880f7dfe7a0ed070b730d0449a3","user":{"login":"ohsu-comp-bio","id":11467587,"node_id":"MDEyOk9yZ2FuaXphdGlvbjExNDY3NTg3","avatar_url":"https://avatars0.githubusercontent.com/u/11467587?v=4","gravatar_id":"","url":"https://api.github.com/users/ohsu-comp-bio","html_url":"https://github.com/ohsu-comp-bio","followers_url":"https://api.github.com/users/ohsu-comp-bio/followers","following_url":"https://api.github.com/users/ohsu-comp-bio/following{/other_user}","gists_url":"https://api.github.com/users/ohsu-comp-bio/gists{/gist_id}","starred_url":"https://api.github.com/users/ohsu-comp-bio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ohsu-comp-bio/subscriptions","organizations_url":"https://api.github.com/users/ohsu-comp-bio/orgs","repos_url":"https://api.github.com/users/ohsu-comp-bio/repos","events_url":"https://api.github.com/users/ohsu-comp-bio/events{/privacy}","received_events_url":"https://api.github.com/users/ohsu-comp-bio/received_events","type":"Organization","site_admin":false},"repo":{"id":88804628,"node_id":"MDEwOlJlcG9zaXRvcnk4ODgwNDYyOA==","name":"g2p-aggregator","full_name":"ohsu-comp-bio/g2p-aggregator","owner":{"login":"ohsu-comp-bio","id":11467587,"node_id":"MDEyOk9yZ2FuaXphdGlvbjExNDY3NTg3","avatar_url":"https://avatars0.githubusercontent.com/u/11467587?v=4","gravatar_id":"","url":"https://api.github.com/users/ohsu-comp-bio","html_url":"https://github.com/ohsu-comp-bio","followers_url":"https://api.github.com/users/ohsu-comp-bio/followers","following_url":"https://api.github.com/users/ohsu-comp-bio/following{/other_user}","gists_url":"https://api.github.com/users/ohsu-comp-bio/gists{/gist_id}","starred_url":"https://api.github.com/users/ohsu-comp-bio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ohsu-comp-bio/subscriptions","organizations_url":"https://api.github.com/users/ohsu-comp-bio/orgs","repos_url":"https://api.github.com/users/ohsu-comp-bio/repos","events_url":"https://api.github.com/users/ohsu-comp-bio/events{/privacy}","received_events_url":"https://api.github.com/users/ohsu-comp-bio/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/ohsu-comp-bio/g2p-aggregator","description":"Associations of genomic features, drugs and diseases","fork":false,"url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator","forks_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/forks","keys_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/keys{/key_id}","collaborators_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/teams","hooks_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/hooks","issue_events_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/events{/number}","events_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/events","assignees_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/assignees{/user}","branches_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/branches{/branch}","tags_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/tags","blobs_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/refs{/sha}","trees_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/trees{/sha}","statuses_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/statuses/{sha}","languages_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/languages","stargazers_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/stargazers","contributors_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/contributors","subscribers_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/subscribers","subscription_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/subscription","commits_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/commits{/sha}","git_commits_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/commits{/sha}","comments_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/comments{/number}","issue_comment_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/comments{/number}","contents_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/contents/{+path}","compare_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/compare/{base}...{head}","merges_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/merges","archive_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/downloads","issues_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues{/number}","pulls_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls{/number}","milestones_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/milestones{/number}","notifications_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/labels{/name}","releases_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/releases{/id}","deployments_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/deployments","created_at":"2017-04-20T00:51:34Z","updated_at":"2018-07-03T08:24:49Z","pushed_at":"2018-07-02T23:23:09Z","git_url":"git://github.com/ohsu-comp-bio/g2p-aggregator.git","ssh_url":"git@github.com:ohsu-comp-bio/g2p-aggregator.git","clone_url":"https://github.com/ohsu-comp-bio/g2p-aggregator.git","svn_url":"https://github.com/ohsu-comp-bio/g2p-aggregator","homepage":"","size":19504,"stargazers_count":18,"watchers_count":18,"language":"HTML","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":4,"mirror_url":null,"archived":false,"open_issues_count":13,"license":{"key":"mit","name":"MIT License","spdx_id":"MIT","url":"https://api.github.com/licenses/mit","node_id":"MDc6TGljZW5zZTEz"},"forks":4,"open_issues":13,"watchers":18,"default_branch":"v0.10"}},"base":{"label":"ohsu-comp-bio:v0.11","ref":"v0.11","sha":"d082cbef9d3b64971d435fd1921aaa0c73aec562","user":{"login":"ohsu-comp-bio","id":11467587,"node_id":"MDEyOk9yZ2FuaXphdGlvbjExNDY3NTg3","avatar_url":"https://avatars0.githubusercontent.com/u/11467587?v=4","gravatar_id":"","url":"https://api.github.com/users/ohsu-comp-bio","html_url":"https://github.com/ohsu-comp-bio","followers_url":"https://api.github.com/users/ohsu-comp-bio/followers","following_url":"https://api.github.com/users/ohsu-comp-bio/following{/other_user}","gists_url":"https://api.github.com/users/ohsu-comp-bio/gists{/gist_id}","starred_url":"https://api.github.com/users/ohsu-comp-bio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ohsu-comp-bio/subscriptions","organizations_url":"https://api.github.com/users/ohsu-comp-bio/orgs","repos_url":"https://api.github.com/users/ohsu-comp-bio/repos","events_url":"https://api.github.com/users/ohsu-comp-bio/events{/privacy}","received_events_url":"https://api.github.com/users/ohsu-comp-bio/received_events","type":"Organization","site_admin":false},"repo":{"id":88804628,"node_id":"MDEwOlJlcG9zaXRvcnk4ODgwNDYyOA==","name":"g2p-aggregator","full_name":"ohsu-comp-bio/g2p-aggregator","owner":{"login":"ohsu-comp-bio","id":11467587,"node_id":"MDEyOk9yZ2FuaXphdGlvbjExNDY3NTg3","avatar_url":"https://avatars0.githubusercontent.com/u/11467587?v=4","gravatar_id":"","url":"https://api.github.com/users/ohsu-comp-bio","html_url":"https://github.com/ohsu-comp-bio","followers_url":"https://api.github.com/users/ohsu-comp-bio/followers","following_url":"https://api.github.com/users/ohsu-comp-bio/following{/other_user}","gists_url":"https://api.github.com/users/ohsu-comp-bio/gists{/gist_id}","starred_url":"https://api.github.com/users/ohsu-comp-bio/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ohsu-comp-bio/subscriptions","organizations_url":"https://api.github.com/users/ohsu-comp-bio/orgs","repos_url":"https://api.github.com/users/ohsu-comp-bio/repos","events_url":"https://api.github.com/users/ohsu-comp-bio/events{/privacy}","received_events_url":"https://api.github.com/users/ohsu-comp-bio/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/ohsu-comp-bio/g2p-aggregator","description":"Associations of genomic features, drugs and diseases","fork":false,"url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator","forks_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/forks","keys_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/keys{/key_id}","collaborators_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/teams","hooks_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/hooks","issue_events_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/events{/number}","events_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/events","assignees_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/assignees{/user}","branches_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/branches{/branch}","tags_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/tags","blobs_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/refs{/sha}","trees_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/trees{/sha}","statuses_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/statuses/{sha}","languages_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/languages","stargazers_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/stargazers","contributors_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/contributors","subscribers_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/subscribers","subscription_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/subscription","commits_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/commits{/sha}","git_commits_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/git/commits{/sha}","comments_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/comments{/number}","issue_comment_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/comments{/number}","contents_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/contents/{+path}","compare_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/compare/{base}...{head}","merges_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/merges","archive_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/downloads","issues_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues{/number}","pulls_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls{/number}","milestones_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/milestones{/number}","notifications_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/labels{/name}","releases_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/releases{/id}","deployments_url":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/deployments","created_at":"2017-04-20T00:51:34Z","updated_at":"2018-07-03T08:24:49Z","pushed_at":"2018-07-02T23:23:09Z","git_url":"git://github.com/ohsu-comp-bio/g2p-aggregator.git","ssh_url":"git@github.com:ohsu-comp-bio/g2p-aggregator.git","clone_url":"https://github.com/ohsu-comp-bio/g2p-aggregator.git","svn_url":"https://github.com/ohsu-comp-bio/g2p-aggregator","homepage":"","size":19504,"stargazers_count":18,"watchers_count":18,"language":"HTML","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":true,"has_pages":false,"forks_count":4,"mirror_url":null,"archived":false,"open_issues_count":13,"license":{"key":"mit","name":"MIT License","spdx_id":"MIT","url":"https://api.github.com/licenses/mit","node_id":"MDc6TGljZW5zZTEz"},"forks":4,"open_issues":13,"watchers":18,"default_branch":"v0.10"}},"_links":{"self":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123"},"html":{"href":"https://github.com/ohsu-comp-bio/g2p-aggregator/pull/123"},"issue":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/123"},"comments":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/issues/123/comments"},"review_comments":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123/comments"},"review_comment":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/pulls/123/commits"},"statuses":{"href":"https://api.github.com/repos/ohsu-comp-bio/g2p-aggregator/statuses/552f10f2c32ae880f7dfe7a0ed070b730d0449a3"}},"author_association":"MEMBER"}}
{"actor":{"display_login":"bwalsh"}}