{"action":"created","issue":{"url":"https://api.github.com/repos/egeulgen/pathfindR/issues/2","repository_url":"https://api.github.com/repos/egeulgen/pathfindR","labels_url":"https://api.github.com/repos/egeulgen/pathfindR/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/egeulgen/pathfindR/issues/2/comments","events_url":"https://api.github.com/repos/egeulgen/pathfindR/issues/2/events","html_url":"https://github.com/egeulgen/pathfindR/issues/2","id":336641786,"node_id":"MDU6SXNzdWUzMzY2NDE3ODY=","number":2,"title":"Using pathfindR with custom gene sets","user":{"login":"alcooj","id":12235998,"node_id":"MDQ6VXNlcjEyMjM1OTk4","avatar_url":"https://avatars0.githubusercontent.com/u/12235998?v=4","gravatar_id":"","url":"https://api.github.com/users/alcooj","html_url":"https://github.com/alcooj","followers_url":"https://api.github.com/users/alcooj/followers","following_url":"https://api.github.com/users/alcooj/following{/other_user}","gists_url":"https://api.github.com/users/alcooj/gists{/gist_id}","starred_url":"https://api.github.com/users/alcooj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alcooj/subscriptions","organizations_url":"https://api.github.com/users/alcooj/orgs","repos_url":"https://api.github.com/users/alcooj/repos","events_url":"https://api.github.com/users/alcooj/events{/privacy}","received_events_url":"https://api.github.com/users/alcooj/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-06-28T14:18:53Z","updated_at":"2018-12-04T04:53:55Z","closed_at":"2018-07-03T14:15:23Z","author_association":"NONE","body":"Good day, Ege.\r\n\r\nI've been trying out pathfindR and, though the documentation on some of the arguments in `run_pathfindR` is still sketchy (I'm new to this so it was not clear to me how to properly tune search method parameters),  I think it's a wonderful package overall.\r\n\r\nI was wondering if there is a way to define custom gene sets to run the analysis on. I'm particularly interested in gene sets from the MSigDB collections that do overlap with the currently available gene sets (ex. Reactome, GO, etc.).\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/egeulgen/pathfindR/issues/comments/443971217","html_url":"https://github.com/egeulgen/pathfindR/issues/2#issuecomment-443971217","issue_url":"https://api.github.com/repos/egeulgen/pathfindR/issues/2","id":443971217,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0Mzk3MTIxNw==","user":{"login":"alcooj","id":12235998,"node_id":"MDQ6VXNlcjEyMjM1OTk4","avatar_url":"https://avatars0.githubusercontent.com/u/12235998?v=4","gravatar_id":"","url":"https://api.github.com/users/alcooj","html_url":"https://github.com/alcooj","followers_url":"https://api.github.com/users/alcooj/followers","following_url":"https://api.github.com/users/alcooj/following{/other_user}","gists_url":"https://api.github.com/users/alcooj/gists{/gist_id}","starred_url":"https://api.github.com/users/alcooj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alcooj/subscriptions","organizations_url":"https://api.github.com/users/alcooj/orgs","repos_url":"https://api.github.com/users/alcooj/repos","events_url":"https://api.github.com/users/alcooj/events{/privacy}","received_events_url":"https://api.github.com/users/alcooj/received_events","type":"User","site_admin":false},"created_at":"2018-12-04T04:53:55Z","updated_at":"2018-12-04T04:53:55Z","author_association":"NONE","body":"Hello, Ege.\r\n\r\nSorry for just responding now. I haven't checked my GitHub account for quite some time.\r\n\r\nI've not worked with gene sets for a while, but I'll be sure to try it out when I get the chance.\r\n\r\nThanks again for all your hard work."}}
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