{"action":"created","issue":{"url":"https://api.github.com/repos/friendsofstrandseq/pipeline/issues/19","repository_url":"https://api.github.com/repos/friendsofstrandseq/pipeline","labels_url":"https://api.github.com/repos/friendsofstrandseq/pipeline/issues/19/labels{/name}","comments_url":"https://api.github.com/repos/friendsofstrandseq/pipeline/issues/19/comments","events_url":"https://api.github.com/repos/friendsofstrandseq/pipeline/issues/19/events","html_url":"https://github.com/friendsofstrandseq/pipeline/issues/19","id":366781853,"node_id":"MDU6SXNzdWUzNjY3ODE4NTM=","number":19,"title":"bug: Overlapping SCE segments","user":{"login":"maryamghr","id":26224032,"node_id":"MDQ6VXNlcjI2MjI0MDMy","avatar_url":"https://avatars3.githubusercontent.com/u/26224032?v=4","gravatar_id":"","url":"https://api.github.com/users/maryamghr","html_url":"https://github.com/maryamghr","followers_url":"https://api.github.com/users/maryamghr/followers","following_url":"https://api.github.com/users/maryamghr/following{/other_user}","gists_url":"https://api.github.com/users/maryamghr/gists{/gist_id}","starred_url":"https://api.github.com/users/maryamghr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maryamghr/subscriptions","organizations_url":"https://api.github.com/users/maryamghr/orgs","repos_url":"https://api.github.com/users/maryamghr/repos","events_url":"https://api.github.com/users/maryamghr/events{/privacy}","received_events_url":"https://api.github.com/users/maryamghr/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-10-04T13:09:32Z","updated_at":"2018-10-04T16:44:02Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"The SCE simulation generates some overlapping sce segments."},"comment":{"url":"https://api.github.com/repos/friendsofstrandseq/pipeline/issues/comments/427088903","html_url":"https://github.com/friendsofstrandseq/pipeline/issues/19#issuecomment-427088903","issue_url":"https://api.github.com/repos/friendsofstrandseq/pipeline/issues/19","id":427088903,"node_id":"MDEyOklzc3VlQ29tbWVudDQyNzA4ODkwMw==","user":{"login":"maryamghr","id":26224032,"node_id":"MDQ6VXNlcjI2MjI0MDMy","avatar_url":"https://avatars3.githubusercontent.com/u/26224032?v=4","gravatar_id":"","url":"https://api.github.com/users/maryamghr","html_url":"https://github.com/maryamghr","followers_url":"https://api.github.com/users/maryamghr/followers","following_url":"https://api.github.com/users/maryamghr/following{/other_user}","gists_url":"https://api.github.com/users/maryamghr/gists{/gist_id}","starred_url":"https://api.github.com/users/maryamghr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maryamghr/subscriptions","organizations_url":"https://api.github.com/users/maryamghr/orgs","repos_url":"https://api.github.com/users/maryamghr/repos","events_url":"https://api.github.com/users/maryamghr/events{/privacy}","received_events_url":"https://api.github.com/users/maryamghr/received_events","type":"User","site_admin":false},"created_at":"2018-10-04T16:44:02Z","updated_at":"2018-10-04T16:44:02Z","author_association":"CONTRIBUTOR","body":"I ran the count simulation rule with seed 1 and bin size 100000 (in \"arbitrary-segments\" branch of the pipeline), and I observed these two overlapping regions in the sce table in the same cell and chromosome (with different classes):\r\nThat's what we had observed previously as the result of the previous sce detection tool. Is it because of that?\r\n               sample    cell chrom start       end class max_chrom_coordinate\r\n1: simulation0-100000 cell_55 chr14     0 114364328    CC            114364328\r\n2: simulation0-100000 cell_55 chr14     0 107043718    CW            114364328"}}
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