{"action":"opened","issue":{"url":"https://api.github.com/repos/spack/spack/issues/8515","repository_url":"https://api.github.com/repos/spack/spack","labels_url":"https://api.github.com/repos/spack/spack/issues/8515/labels{/name}","comments_url":"https://api.github.com/repos/spack/spack/issues/8515/comments","events_url":"https://api.github.com/repos/spack/spack/issues/8515/events","html_url":"https://github.com/spack/spack/issues/8515","id":333788820,"node_id":"MDU6SXNzdWUzMzM3ODg4MjA=","number":8515,"title":"Cant install glib 2.56.0 throws error on CentOS 6,","user":{"login":"MattWeatherford","id":12401873,"node_id":"MDQ6VXNlcjEyNDAxODcz","avatar_url":"https://avatars1.githubusercontent.com/u/12401873?v=4","gravatar_id":"","url":"https://api.github.com/users/MattWeatherford","html_url":"https://github.com/MattWeatherford","followers_url":"https://api.github.com/users/MattWeatherford/followers","following_url":"https://api.github.com/users/MattWeatherford/following{/other_user}","gists_url":"https://api.github.com/users/MattWeatherford/gists{/gist_id}","starred_url":"https://api.github.com/users/MattWeatherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MattWeatherford/subscriptions","organizations_url":"https://api.github.com/users/MattWeatherford/orgs","repos_url":"https://api.github.com/users/MattWeatherford/repos","events_url":"https://api.github.com/users/MattWeatherford/events{/privacy}","received_events_url":"https://api.github.com/users/MattWeatherford/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-06-19T18:31:40Z","updated_at":"2018-06-19T18:31:40Z","closed_at":null,"author_association":"NONE","body":"If you want to report a build error for some package, or a bug in core please use the following template as a guideline:\r\n\r\n-----\r\n\r\nSummary\r\nOn Centos 6 HPC node, I would like to get R 3.5.0 installed, but glib seems to break the compile.\r\n\r\n### Expected Result\r\nI expect glib 2.5.6 to install.....   glib 2.5.1 installs just fine\r\n\r\n\r\n### Actual Result\r\n==> Installing glib\r\n==> Using cached archive: /suppscr/csde/spack/spack/var/spack/cache/glib/glib-2.56.0.tar.xz\r\n==> Staging archive: /suppscr/csde/spack/spack/var/spack/stage/glib-2.56.0-qkzow5e5li54lwgmd53r2t2aqhtm2rxz/glib-2.56.0.tar.xz\r\n==> Created stage in /suppscr/csde/spack/spack/var/spack/stage/glib-2.56.0-qkzow5e5li54lwgmd53r2t2aqhtm2rxz\r\n==> Applied patch no-Werror=format-security.patch\r\n==> Building glib [AutotoolsPackage]\r\n==> Executing phase: 'autoreconf'\r\n==> Executing phase: 'configure'\r\n==> Executing phase: 'build'\r\n==> Error: ProcessError: Command exited with status 2:\r\n    'make' '-j16'\r\n\r\n9 errors found in build log:\r\n     1236      CC       libgio_2_0_la-ginetsocketaddress.lo\r\n     1237      CC       libgio_2_0_la-ginitable.lo\r\n     1238      CC       libgio_2_0_la-ginputstream.lo\r\n     1239      CC       libgio_2_0_la-gioerror.lo\r\n     1240      CC       libgio_2_0_la-giomodule.lo\r\n     1241    gfile.c: In function â€˜splice_stream_with_progressâ€™:\r\n  >> 1242    gfile.c:3017: error: â€˜F_SETPIPE_SZâ€™ undeclared (first use in this function)\r\n  >> 1243    gfile.c:3017: error: (Each undeclared identifier is reported only once\r\n  >> 1244    gfile.c:3017: error: for each function it appears in.)\r\n  >> 1245    gfile.c:3021: error: â€˜F_GETPIPE_SZâ€™ undeclared (first use in this function)\r\n     1246      CC       libgio_2_0_la-giomodule-priv.lo\r\n     1247      CC       libgio_2_0_la-gioscheduler.lo\r\n  >> 1248    make[4]: *** [libgio_2_0_la-gfile.lo] Error 1\r\n     1249    make[4]: *** Waiting for unfinished jobs....\r\n     1250    In file included from ../gobject/gbinding.h:29,\r\n     1251                     from ../glib/glib-object.h:23,\r\n     1252                     from ../gio/gioenums.h:28,\r\n     1253                     from ../gio/giotypes.h:28,\r\n     1254                     from ../gio/ginputstream.h:28,\r\n\r\n     ...\r\n\r\n     1367                     from giomodule.c:25:\r\n     1368    ../gobject/gobject.h: In function â€˜g_set_objectâ€™:\r\n     1369    ../gobject/gobject.h:725: warning: value computed is not used\r\n     1370    giomodule.c: In function â€˜_g_io_modules_ensure_extension_points_registeredâ€™:\r\n     1371    giomodule.c:1018: warning: â€˜g_desktop_app_info_lookup_get_typeâ€™ is deprecated (declared at gdesktopappinfo.h\r\n             :141)\r\n     1372    make[4]: Leaving directory `/tmp/mbw/spack-stage/spack-stage-CB_z_z/glib-2.56.0/gio'\r\n  >> 1373    make[3]: *** [all-recursive] Error 1\r\n     1374    make[3]: Leaving directory `/tmp/mbw/spack-stage/spack-stage-CB_z_z/glib-2.56.0/gio'\r\n  >> 1375    make[2]: *** [all] Error 2\r\n     1376    make[2]: Leaving directory `/tmp/mbw/spack-stage/spack-stage-CB_z_z/glib-2.56.0/gio'\r\n  >> 1377    make[1]: *** [all-recursive] Error 1\r\n     1378    make[1]: Leaving directory `/tmp/mbw/spack-stage/spack-stage-CB_z_z/glib-2.56.0'\r\n  >> 1379    make: *** [all] Error 2\r\n\r\nSee build log for details:\r\n  /suppscr/csde/spack/spack/var/spack/stage/glib-2.56.0-qkzow5e5li54lwgmd53r2t2aqhtm2rxz/glib-2.56.0/spack-build.out\r\n[mbw@n0470 spack]$ \r\n\r\n\r\nWhat happened instead\r\n\r\nglib 2.56 fails to compile, and so R 3.5.0 fails to compile.\r\n\r\n\r\n### Steps to reproduce the issue\r\n\r\n```console\r\n$ spack install r@3.5.0\r\nor more simply:\r\n$ spack install glib@2.56.0\r\n...\r\n```\r\n\r\n### Information on your system\r\n\r\nThis includes:\r\n\r\n 1. which platform you are using\r\n\r\nCentOS 6  [\r\nmbw@n0470 spack]$ uname -a\r\nLinux n0470 2.6.32-696.10.3.el6.x86_64 #1 SMP Tue Sep 26 18:14:22 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux\r\n\r\n 2. any relevant configuration detail (custom `packages.yaml` or `modules.yaml`, etc.)\r\nno custom anything\r\n\r\n-----\r\n"}}
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