{"action":"created","issue":{"url":"https://api.github.com/repos/soedinglab/MMseqs2/issues/80","repository_url":"https://api.github.com/repos/soedinglab/MMseqs2","labels_url":"https://api.github.com/repos/soedinglab/MMseqs2/issues/80/labels{/name}","comments_url":"https://api.github.com/repos/soedinglab/MMseqs2/issues/80/comments","events_url":"https://api.github.com/repos/soedinglab/MMseqs2/issues/80/events","html_url":"https://github.com/soedinglab/MMseqs2/issues/80","id":314054890,"number":80,"title":"mmseqs taxonomy problem ","user":{"login":"henav","id":37070017,"avatar_url":"https://avatars3.githubusercontent.com/u/37070017?v=4","gravatar_id":"","url":"https://api.github.com/users/henav","html_url":"https://github.com/henav","followers_url":"https://api.github.com/users/henav/followers","following_url":"https://api.github.com/users/henav/following{/other_user}","gists_url":"https://api.github.com/users/henav/gists{/gist_id}","starred_url":"https://api.github.com/users/henav/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/henav/subscriptions","organizations_url":"https://api.github.com/users/henav/orgs","repos_url":"https://api.github.com/users/henav/repos","events_url":"https://api.github.com/users/henav/events{/privacy}","received_events_url":"https://api.github.com/users/henav/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2018-04-13T10:31:46Z","updated_at":"2018-04-13T12:13:02Z","closed_at":null,"author_association":"NONE","body":"Hi, \r\nI am using mmseqs taxonomy, and following the taxonomy assignment workflow, using uniref100 as a target DB.  \r\n\r\nthe entire workflow works great, until the \"mmseqs taxonomy\" command. \r\nThe first search seems to be working good, however, I am getting an error in the second search, and the process dies. \r\n\r\nMMseqs call:\r\nmmseqs taxonomy est00001DB uniref100DB uniref100DB.tsv /ncbi-taxdump/ queryLcaDB  /tmp/ --threads 25\r\n\r\n## MMseqs Output \r\n\r\nProgram call:\r\n/tmp/3706626149599022609/top1 uniref100DB /tmp/3706626149599022609/top1 /tmp/3706626149599022609/aligned --extract-mode 2 \r\n\r\nMMseqs Version:\t2.23394\r\nExtract mode\t2\r\nThreads     \t80\r\nVerbosity   \t3\r\n\r\nQuery  file: /tmp/3706626149599022609/top1\r\nTarget  file: uniref100DB\r\nAlignment database: /tmp/3706626149599022609/top1\r\nStart writing file to /tmp/3706626149599022609/aligned\r\nSet sym link from /tmp/3706626149599022609/top1_h to /tmp/3706626149599022609/aligned_h\r\nSet sym link from /tmp/3706626149599022609/top1_h.index to /tmp/3706626149599022609/aligned_h.index\r\nDone.\r\nTime for merging files: 0 h 0 m 1 s\r\nTime for processing: 0 h 0 m 25s\r\nPlease recreate your database or add a .dbtype file to your sequence/profile database.\r\nError: Second search died\r\n\r\n\r\nI am using version 2.23394 installed through conda environment, ubuntu 16.04 server\r\nThanks for your help!"},"comment":{"url":"https://api.github.com/repos/soedinglab/MMseqs2/issues/comments/381116477","html_url":"https://github.com/soedinglab/MMseqs2/issues/80#issuecomment-381116477","issue_url":"https://api.github.com/repos/soedinglab/MMseqs2/issues/80","id":381116477,"user":{"login":"milot-mirdita","id":63657,"avatar_url":"https://avatars2.githubusercontent.com/u/63657?v=4","gravatar_id":"","url":"https://api.github.com/users/milot-mirdita","html_url":"https://github.com/milot-mirdita","followers_url":"https://api.github.com/users/milot-mirdita/followers","following_url":"https://api.github.com/users/milot-mirdita/following{/other_user}","gists_url":"https://api.github.com/users/milot-mirdita/gists{/gist_id}","starred_url":"https://api.github.com/users/milot-mirdita/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/milot-mirdita/subscriptions","organizations_url":"https://api.github.com/users/milot-mirdita/orgs","repos_url":"https://api.github.com/users/milot-mirdita/repos","events_url":"https://api.github.com/users/milot-mirdita/events{/privacy}","received_events_url":"https://api.github.com/users/milot-mirdita/received_events","type":"User","site_admin":false},"created_at":"2018-04-13T12:13:02Z","updated_at":"2018-04-13T12:13:02Z","author_association":"MEMBER","body":"I mean, I just had fixed your issue and commited that. There is one more commit now."}}
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