{"action":"created","issue":{"url":"https://api.github.com/repos/allenai/science-parse/issues/106","repository_url":"https://api.github.com/repos/allenai/science-parse","labels_url":"https://api.github.com/repos/allenai/science-parse/issues/106/labels{/name}","comments_url":"https://api.github.com/repos/allenai/science-parse/issues/106/comments","events_url":"https://api.github.com/repos/allenai/science-parse/issues/106/events","html_url":"https://github.com/allenai/science-parse/issues/106","id":320980811,"number":106,"title":"Timeout","user":{"login":"mahmoudaymo","id":8507454,"avatar_url":"https://avatars3.githubusercontent.com/u/8507454?v=4","gravatar_id":"","url":"https://api.github.com/users/mahmoudaymo","html_url":"https://github.com/mahmoudaymo","followers_url":"https://api.github.com/users/mahmoudaymo/followers","following_url":"https://api.github.com/users/mahmoudaymo/following{/other_user}","gists_url":"https://api.github.com/users/mahmoudaymo/gists{/gist_id}","starred_url":"https://api.github.com/users/mahmoudaymo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mahmoudaymo/subscriptions","organizations_url":"https://api.github.com/users/mahmoudaymo/orgs","repos_url":"https://api.github.com/users/mahmoudaymo/repos","events_url":"https://api.github.com/users/mahmoudaymo/events{/privacy}","received_events_url":"https://api.github.com/users/mahmoudaymo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-05-07T22:30:02Z","updated_at":"2018-05-08T08:35:22Z","closed_at":null,"author_association":"NONE","body":"I have followed the instruction as per cli and I get the folloiwng error and i am not sure why, could you please help me with the issue.\r\n\r\njava -Xmx6g -jar science-parse-cli-assembly-1.3.2-SNAPSHOT.jar -o /home/usr/papers/ -f ox.json /home/usr/papers/OX.pdf\r\n00:05:29.631 [main] DEBUG com.amazonaws.AmazonWebServiceClient - Internal logging successfully configured to commons logger: true\r\n00:05:30.001 [main] DEBUG com.amazonaws.metrics.AwsSdkMetrics - Admin mbean registered under com.amazonaws.management:type=AwsSdkMetrics\r\n00:05:30.159 [main] DEBUG c.a.internal.config.InternalConfig - Configuration override awssdk_config_override.json not found.\r\n00:05:31.776 [ForkJoinPool-1-worker-1] INFO  org.allenai.scienceparse.Parser - Loading gazetteer from /home/mahmoud/.ai2/datastore/public/org.allenai.scienceparse/gazetteer-v5.json\r\n00:05:31.777 [ModelLoaderThread] INFO  org.allenai.scienceparse.Parser - Loading model from /home/mahmoud/.ai2/datastore/public/org.allenai.scienceparse/productionModel-v9.dat\r\n00:05:31.781 [ForkJoinPool-1-worker-1] INFO  org.allenai.scienceparse.Parser - Loading bib model from /home/mahmoud/.ai2/datastore/public/org.allenai.scienceparse/productionBibModel-v7.dat\r\n00:05:31.828 [ForkJoinPool-1-worker-1] INFO  org.allenai.scienceparse.Parser - Creating gazetteer cache at /tmp/gazetteer-v5.json-57500763.gazetteerCache.bin\r\n00:05:45.620 [ForkJoinPool-1-worker-1] INFO  o.a.scienceparse.ParserGroundTruth - Read 1609659 papers.\r\n00:14:28.071 [ModelLoaderThread] INFO  org.allenai.datastore.Datastore - Starting to wait on /home/mahmoud/.ai2/datastore/public/org.allenai.scienceparse/Word2VecModel-v1.bin.lock\r\n00:21:09.760 [ForkJoinPool-1-worker-1] INFO  o.a.scienceparse.ExtractReferences - could not load kermit gazetter\r\nException in thread \"main\" java.util.concurrent.TimeoutException: Futures timed out after [15 minutes]\r\n\tat scala.concurrent.impl.Promise$DefaultPromise.ready(Promise.scala:219)\r\n\tat scala.concurrent.impl.Promise$DefaultPromise.result(Promise.scala:223)\r\n\tat scala.concurrent.Await$$anonfun$result$1.apply(package.scala:116)\r\n\tat scala.concurrent.BlockContext$DefaultBlockContext$.blockOn(BlockContext.scala:53)\r\n\tat scala.concurrent.Await$.result(package.scala:116)\r\n\tat org.allenai.scienceparse.RunSP$$anonfun$main$1.apply(RunSP.scala:195)\r\n\tat org.allenai.scienceparse.RunSP$$anonfun$main$1.apply(RunSP.scala:83)\r\n\tat scala.Option.foreach(Option.scala:257)\r\n\tat org.allenai.scienceparse.RunSP$.main(RunSP.scala:83)\r\n\tat org.allenai.scienceparse.RunSP.main(RunSP.scala)\r\n"},"comment":{"url":"https://api.github.com/repos/allenai/science-parse/issues/comments/387327828","html_url":"https://github.com/allenai/science-parse/issues/106#issuecomment-387327828","issue_url":"https://api.github.com/repos/allenai/science-parse/issues/106","id":387327828,"user":{"login":"mahmoudaymo","id":8507454,"avatar_url":"https://avatars3.githubusercontent.com/u/8507454?v=4","gravatar_id":"","url":"https://api.github.com/users/mahmoudaymo","html_url":"https://github.com/mahmoudaymo","followers_url":"https://api.github.com/users/mahmoudaymo/followers","following_url":"https://api.github.com/users/mahmoudaymo/following{/other_user}","gists_url":"https://api.github.com/users/mahmoudaymo/gists{/gist_id}","starred_url":"https://api.github.com/users/mahmoudaymo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mahmoudaymo/subscriptions","organizations_url":"https://api.github.com/users/mahmoudaymo/orgs","repos_url":"https://api.github.com/users/mahmoudaymo/repos","events_url":"https://api.github.com/users/mahmoudaymo/events{/privacy}","received_events_url":"https://api.github.com/users/mahmoudaymo/received_events","type":"User","site_admin":false},"created_at":"2018-05-08T08:35:22Z","updated_at":"2018-05-08T08:35:22Z","author_association":"NONE","body":"I have tried all the afternoon and many times, I always get the same error."}}
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