{"action":"created","issue":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/1299","repository_url":"https://api.github.com/repos/GMOD/Apollo","labels_url":"https://api.github.com/repos/GMOD/Apollo/issues/1299/labels{/name}","comments_url":"https://api.github.com/repos/GMOD/Apollo/issues/1299/comments","events_url":"https://api.github.com/repos/GMOD/Apollo/issues/1299/events","html_url":"https://github.com/GMOD/Apollo/pull/1299","id":181540469,"node_id":"MDExOlB1bGxSZXF1ZXN0ODgzNTE5NDQ=","number":1299,"title":"While adding a transcript, recalculate CDS if there are overlapping sequence alterations","user":{"login":"deepakunni3","id":4530272,"node_id":"MDQ6VXNlcjQ1MzAyNzI=","avatar_url":"https://avatars1.githubusercontent.com/u/4530272?v=4","gravatar_id":"","url":"https://api.github.com/users/deepakunni3","html_url":"https://github.com/deepakunni3","followers_url":"https://api.github.com/users/deepakunni3/followers","following_url":"https://api.github.com/users/deepakunni3/following{/other_user}","gists_url":"https://api.github.com/users/deepakunni3/gists{/gist_id}","starred_url":"https://api.github.com/users/deepakunni3/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/deepakunni3/subscriptions","organizations_url":"https://api.github.com/users/deepakunni3/orgs","repos_url":"https://api.github.com/users/deepakunni3/repos","events_url":"https://api.github.com/users/deepakunni3/events{/privacy}","received_events_url":"https://api.github.com/users/deepakunni3/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/GMOD/Apollo/milestones/26","html_url":"https://github.com/GMOD/Apollo/milestone/26","labels_url":"https://api.github.com/repos/GMOD/Apollo/milestones/26/labels","id":1657985,"node_id":"MDk6TWlsZXN0b25lMTY1Nzk4NQ==","number":26,"title":"2.0.5","description":"","creator":{"login":"nathandunn","id":751274,"node_id":"MDQ6VXNlcjc1MTI3NA==","avatar_url":"https://avatars2.githubusercontent.com/u/751274?v=4","gravatar_id":"","url":"https://api.github.com/users/nathandunn","html_url":"https://github.com/nathandunn","followers_url":"https://api.github.com/users/nathandunn/followers","following_url":"https://api.github.com/users/nathandunn/following{/other_user}","gists_url":"https://api.github.com/users/nathandunn/gists{/gist_id}","starred_url":"https://api.github.com/users/nathandunn/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nathandunn/subscriptions","organizations_url":"https://api.github.com/users/nathandunn/orgs","repos_url":"https://api.github.com/users/nathandunn/repos","events_url":"https://api.github.com/users/nathandunn/events{/privacy}","received_events_url":"https://api.github.com/users/nathandunn/received_events","type":"User","site_admin":false},"open_issues":0,"closed_issues":103,"state":"closed","created_at":"2016-03-21T17:36:39Z","updated_at":"2017-01-28T05:19:07Z","due_on":null,"closed_at":"2017-01-28T05:19:07Z"},"comments":9,"created_at":"2016-10-06T22:21:55Z","updated_at":"2018-10-09T19:04:38Z","closed_at":"2016-10-07T15:31:10Z","author_association":"COLLABORATOR","pull_request":{"url":"https://api.github.com/repos/GMOD/Apollo/pulls/1299","html_url":"https://github.com/GMOD/Apollo/pull/1299","diff_url":"https://github.com/GMOD/Apollo/pull/1299.diff","patch_url":"https://github.com/GMOD/Apollo/pull/1299.patch"},"body":"@nathandunn Fixes the bug re-introduced while merging PR #1298 \n\nThe bug occurs when you,\n1. Add a transcript\n2. Add an insertion with an in-frame stop codon\n3. Add the same transcript again\n\nWhat is expected: The CDS of the transcript added in Step 3 should account for the in-frame stop codon\nWhat is seen: The CDS doesn't account for the in-frame stop codon\n\nAlso updated the integration test to account for this scenario.\n"},"comment":{"url":"https://api.github.com/repos/GMOD/Apollo/issues/comments/428312442","html_url":"https://github.com/GMOD/Apollo/pull/1299#issuecomment-428312442","issue_url":"https://api.github.com/repos/GMOD/Apollo/issues/1299","id":428312442,"node_id":"MDEyOklzc3VlQ29tbWVudDQyODMxMjQ0Mg==","user":{"login":"childers","id":421248,"node_id":"MDQ6VXNlcjQyMTI0OA==","avatar_url":"https://avatars3.githubusercontent.com/u/421248?v=4","gravatar_id":"","url":"https://api.github.com/users/childers","html_url":"https://github.com/childers","followers_url":"https://api.github.com/users/childers/followers","following_url":"https://api.github.com/users/childers/following{/other_user}","gists_url":"https://api.github.com/users/childers/gists{/gist_id}","starred_url":"https://api.github.com/users/childers/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/childers/subscriptions","organizations_url":"https://api.github.com/users/childers/orgs","repos_url":"https://api.github.com/users/childers/repos","events_url":"https://api.github.com/users/childers/events{/privacy}","received_events_url":"https://api.github.com/users/childers/received_events","type":"User","site_admin":false},"created_at":"2018-10-09T19:04:38Z","updated_at":"2018-10-09T19:04:38Z","author_association":"COLLABORATOR","body":"Right now it is not working through manual annotation.\r\n<img width=\"849\" alt=\"screen shot 2018-10-09 at 3 04 16 pm\" src=\"https://user-images.githubusercontent.com/421248/46692187-a1a12d00-cbd4-11e8-8da0-7136a8281c12.png\">\r\n"}}
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