{"action":"created","issue":{"url":"https://api.github.com/repos/fbreitwieser/krakenuniq/issues/35","repository_url":"https://api.github.com/repos/fbreitwieser/krakenuniq","labels_url":"https://api.github.com/repos/fbreitwieser/krakenuniq/issues/35/labels{/name}","comments_url":"https://api.github.com/repos/fbreitwieser/krakenuniq/issues/35/comments","events_url":"https://api.github.com/repos/fbreitwieser/krakenuniq/issues/35/events","html_url":"https://github.com/fbreitwieser/krakenuniq/issues/35","id":383793908,"node_id":"MDU6SXNzdWUzODM3OTM5MDg=","number":35,"title":"Incorrect patern arguments for krakenuniq-download","user":{"login":"mbhall88","id":20403931,"node_id":"MDQ6VXNlcjIwNDAzOTMx","avatar_url":"https://avatars3.githubusercontent.com/u/20403931?v=4","gravatar_id":"","url":"https://api.github.com/users/mbhall88","html_url":"https://github.com/mbhall88","followers_url":"https://api.github.com/users/mbhall88/followers","following_url":"https://api.github.com/users/mbhall88/following{/other_user}","gists_url":"https://api.github.com/users/mbhall88/gists{/gist_id}","starred_url":"https://api.github.com/users/mbhall88/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mbhall88/subscriptions","organizations_url":"https://api.github.com/users/mbhall88/orgs","repos_url":"https://api.github.com/users/mbhall88/repos","events_url":"https://api.github.com/users/mbhall88/events{/privacy}","received_events_url":"https://api.github.com/users/mbhall88/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-11-23T11:40:45Z","updated_at":"2018-12-10T19:37:19Z","closed_at":"2018-12-10T19:36:39Z","author_association":"NONE","body":"In the script `krakenuniq-download` it says one of the options for `<pattern>` is `microbial-nt` but looking in the perl script it appears this is not a recognised option and instead it should be `nt`\r\nhttps://github.com/fbreitwieser/krakenuniq/blob/80ac242f779c529845a167c1cbc123e761e5e430/scripts/krakenuniq-download#L298\r\n\r\nCan you please update either the usage docs to reflect this or the option in the `ARGV` parsing in the perl script."},"comment":{"url":"https://api.github.com/repos/fbreitwieser/krakenuniq/issues/comments/445944352","html_url":"https://github.com/fbreitwieser/krakenuniq/issues/35#issuecomment-445944352","issue_url":"https://api.github.com/repos/fbreitwieser/krakenuniq/issues/35","id":445944352,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0NTk0NDM1Mg==","user":{"login":"fbreitwieser","id":516060,"node_id":"MDQ6VXNlcjUxNjA2MA==","avatar_url":"https://avatars2.githubusercontent.com/u/516060?v=4","gravatar_id":"","url":"https://api.github.com/users/fbreitwieser","html_url":"https://github.com/fbreitwieser","followers_url":"https://api.github.com/users/fbreitwieser/followers","following_url":"https://api.github.com/users/fbreitwieser/following{/other_user}","gists_url":"https://api.github.com/users/fbreitwieser/gists{/gist_id}","starred_url":"https://api.github.com/users/fbreitwieser/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/fbreitwieser/subscriptions","organizations_url":"https://api.github.com/users/fbreitwieser/orgs","repos_url":"https://api.github.com/users/fbreitwieser/repos","events_url":"https://api.github.com/users/fbreitwieser/events{/privacy}","received_events_url":"https://api.github.com/users/fbreitwieser/received_events","type":"User","site_admin":false},"created_at":"2018-12-10T19:37:19Z","updated_at":"2018-12-10T19:37:19Z","author_association":"OWNER","body":"Should be fixed - both `nt` and `microbial-nt` are now possible. Thanks again for catching that and using KrakenUniq!"}}
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