{"action":"opened","issue":{"url":"https://api.github.com/repos/chuckpr/cowbird/issues/1","repository_url":"https://api.github.com/repos/chuckpr/cowbird","labels_url":"https://api.github.com/repos/chuckpr/cowbird/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/chuckpr/cowbird/issues/1/comments","events_url":"https://api.github.com/repos/chuckpr/cowbird/issues/1/events","html_url":"https://github.com/chuckpr/cowbird/issues/1","id":365172068,"node_id":"MDU6SXNzdWUzNjUxNzIwNjg=","number":1,"title":"Confirm that use of BLAST's `-max_target_seqs` is intentional","user":{"login":"armish","id":7809,"node_id":"MDQ6VXNlcjc4MDk=","avatar_url":"https://avatars2.githubusercontent.com/u/7809?v=4","gravatar_id":"","url":"https://api.github.com/users/armish","html_url":"https://github.com/armish","followers_url":"https://api.github.com/users/armish/followers","following_url":"https://api.github.com/users/armish/following{/other_user}","gists_url":"https://api.github.com/users/armish/gists{/gist_id}","starred_url":"https://api.github.com/users/armish/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/armish/subscriptions","organizations_url":"https://api.github.com/users/armish/orgs","repos_url":"https://api.github.com/users/armish/repos","events_url":"https://api.github.com/users/armish/events{/privacy}","received_events_url":"https://api.github.com/users/armish/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-09-29T22:28:19Z","updated_at":"2018-09-29T22:28:19Z","closed_at":null,"author_association":"NONE","body":"Hi there,\n\nThis is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's `-max_target_seqs` parameter: \n\n- [BLAST.ipynb](https://github.com/chuckpr/cowbird/blob/17742d7701a5466fbcb78877da3dc98f944affc0/BLAST.ipynb)\n\nBased on the recently published report, [Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows](https://academic.oup.com/bioinformatics/advance-article-abstract/doi/10.1093/bioinformatics/bty833/5106166?redirectedFrom=fulltext), there is a strong chance that this parameter is misused in your repository.\n\nIf the use of this parameter was intentional, please feel free to ignore and close this issue but I would highly recommend to add a comment to your source code to notify others about this use case. If this is a duplicate issue, please accept my apologies for the redundancy as this simple automation is not smart enough to identify such issues.\n\nThank you!\n-- Arman ([armish/blast-patrol](https://github.com/armish/blast-patrol))"}}
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