{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/deTiN/issues/14","repository_url":"https://api.github.com/repos/broadinstitute/deTiN","labels_url":"https://api.github.com/repos/broadinstitute/deTiN/issues/14/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/deTiN/issues/14/comments","events_url":"https://api.github.com/repos/broadinstitute/deTiN/issues/14/events","html_url":"https://github.com/broadinstitute/deTiN/issues/14","id":351189704,"node_id":"MDU6SXNzdWUzNTExODk3MDQ=","number":14,"title":"ExAc pickle file for hg38","user":{"login":"erleholgersen","id":5060086,"node_id":"MDQ6VXNlcjUwNjAwODY=","avatar_url":"https://avatars2.githubusercontent.com/u/5060086?v=4","gravatar_id":"","url":"https://api.github.com/users/erleholgersen","html_url":"https://github.com/erleholgersen","followers_url":"https://api.github.com/users/erleholgersen/followers","following_url":"https://api.github.com/users/erleholgersen/following{/other_user}","gists_url":"https://api.github.com/users/erleholgersen/gists{/gist_id}","starred_url":"https://api.github.com/users/erleholgersen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/erleholgersen/subscriptions","organizations_url":"https://api.github.com/users/erleholgersen/orgs","repos_url":"https://api.github.com/users/erleholgersen/repos","events_url":"https://api.github.com/users/erleholgersen/events{/privacy}","received_events_url":"https://api.github.com/users/erleholgersen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-08-16T12:45:37Z","updated_at":"2018-08-16T13:03:46Z","closed_at":null,"author_association":"NONE","body":"Hello,\r\n\r\nI've managed to generate all the input files for my samples, and the final thing I'm missing to run deTiN is an ExAc pickle file for hg38. I assume the version you have provided in the example_data folder is for hg19. What's the easiest way to generate such a file for hg38?\r\n\r\nI assume I can write a Python script to iterate over the lines in the ExAc VCF, populate a dictionary, and  save it as a pickle. Just wondering if there are any easier ways/ pre-written scripts that do this exact thing (I'm not very familiar with tools for processing VCFs in Python, sorry!).\r\n\r\nThanks for any help!\r\n"},"comment":{"url":"https://api.github.com/repos/broadinstitute/deTiN/issues/comments/413537945","html_url":"https://github.com/broadinstitute/deTiN/issues/14#issuecomment-413537945","issue_url":"https://api.github.com/repos/broadinstitute/deTiN/issues/14","id":413537945,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMzUzNzk0NQ==","user":{"login":"amarotaylor","id":5176213,"node_id":"MDQ6VXNlcjUxNzYyMTM=","avatar_url":"https://avatars1.githubusercontent.com/u/5176213?v=4","gravatar_id":"","url":"https://api.github.com/users/amarotaylor","html_url":"https://github.com/amarotaylor","followers_url":"https://api.github.com/users/amarotaylor/followers","following_url":"https://api.github.com/users/amarotaylor/following{/other_user}","gists_url":"https://api.github.com/users/amarotaylor/gists{/gist_id}","starred_url":"https://api.github.com/users/amarotaylor/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/amarotaylor/subscriptions","organizations_url":"https://api.github.com/users/amarotaylor/orgs","repos_url":"https://api.github.com/users/amarotaylor/repos","events_url":"https://api.github.com/users/amarotaylor/events{/privacy}","received_events_url":"https://api.github.com/users/amarotaylor/received_events","type":"User","site_admin":false},"created_at":"2018-08-16T13:03:46Z","updated_at":"2018-08-16T13:03:46Z","author_association":"COLLABORATOR","body":"Hey Erle,\r\nI included this function in the deTiN utilities package. I just noticed this instruction is in the wrong section of the wiki!  Ill move that but have quoted it here\r\n>\r\nCall the deTiN function deTiN_utilities.build_exac_pickle(vcf) with your vcf file.\r\n\r\n"}}
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