{"action":"opened","issue":{"url":"https://api.github.com/repos/AdamaJava/adamajava/issues/18","repository_url":"https://api.github.com/repos/AdamaJava/adamajava","labels_url":"https://api.github.com/repos/AdamaJava/adamajava/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/AdamaJava/adamajava/issues/18/comments","events_url":"https://api.github.com/repos/AdamaJava/adamajava/issues/18/events","html_url":"https://github.com/AdamaJava/adamajava/issues/18","id":378081258,"node_id":"MDU6SXNzdWUzNzgwODEyNTg=","number":18,"title":"Tidy up qannotate Overlap mode","user":{"login":"holmeso","id":7066552,"node_id":"MDQ6VXNlcjcwNjY1NTI=","avatar_url":"https://avatars1.githubusercontent.com/u/7066552?v=4","gravatar_id":"","url":"https://api.github.com/users/holmeso","html_url":"https://github.com/holmeso","followers_url":"https://api.github.com/users/holmeso/followers","following_url":"https://api.github.com/users/holmeso/following{/other_user}","gists_url":"https://api.github.com/users/holmeso/gists{/gist_id}","starred_url":"https://api.github.com/users/holmeso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/holmeso/subscriptions","organizations_url":"https://api.github.com/users/holmeso/orgs","repos_url":"https://api.github.com/users/holmeso/repos","events_url":"https://api.github.com/users/holmeso/events{/privacy}","received_events_url":"https://api.github.com/users/holmeso/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-11-06T23:41:20Z","updated_at":"2018-11-06T23:41:20Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"qannotate Overlap modes needs to be production-ified\r\n\r\n- Code needs to be modularised where possible.\r\n- Tests need to be added.\r\n- some key parameters need to become options (eg. number of threads used)\r\n\r\nKatia has expressed a desire for the overlap mode to become part of the new pipeline, hence this feature request."}}
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