{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/4767","repository_url":"https://api.github.com/repos/broadinstitute/gatk","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/4767/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/4767/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/4767/events","html_url":"https://github.com/broadinstitute/gatk/pull/4767","id":322967258,"number":4767,"title":"Fix bug in sv copy script","user":{"login":"cwhelan","id":709477,"avatar_url":"https://avatars2.githubusercontent.com/u/709477?v=4","gravatar_id":"","url":"https://api.github.com/users/cwhelan","html_url":"https://github.com/cwhelan","followers_url":"https://api.github.com/users/cwhelan/followers","following_url":"https://api.github.com/users/cwhelan/following{/other_user}","gists_url":"https://api.github.com/users/cwhelan/gists{/gist_id}","starred_url":"https://api.github.com/users/cwhelan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cwhelan/subscriptions","organizations_url":"https://api.github.com/users/cwhelan/orgs","repos_url":"https://api.github.com/users/cwhelan/repos","events_url":"https://api.github.com/users/cwhelan/events{/privacy}","received_events_url":"https://api.github.com/users/cwhelan/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-05-14T20:23:49Z","updated_at":"2018-05-14T22:02:42Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/broadinstitute/gatk/pulls/4767","html_url":"https://github.com/broadinstitute/gatk/pull/4767","diff_url":"https://github.com/broadinstitute/gatk/pull/4767.diff","patch_url":"https://github.com/broadinstitute/gatk/pull/4767.patch"},"body":"The SV copy results script has to figure out the total number of workers including standard and preemptibles. The current version of the script had an error in parsing the `gcloud compute dataproc clusters list` command, which left a blank field when no preemptibles were used that couldn't be parsed because it was displayed in fixed-width format. This switches to the CSV format option for the cluster list command, making it easier to parse."},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments/388977438","html_url":"https://github.com/broadinstitute/gatk/pull/4767#issuecomment-388977438","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/4767","id":388977438,"user":{"login":"codecov-io","id":8655789,"avatar_url":"https://avatars0.githubusercontent.com/u/8655789?v=4","gravatar_id":"","url":"https://api.github.com/users/codecov-io","html_url":"https://github.com/codecov-io","followers_url":"https://api.github.com/users/codecov-io/followers","following_url":"https://api.github.com/users/codecov-io/following{/other_user}","gists_url":"https://api.github.com/users/codecov-io/gists{/gist_id}","starred_url":"https://api.github.com/users/codecov-io/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/codecov-io/subscriptions","organizations_url":"https://api.github.com/users/codecov-io/orgs","repos_url":"https://api.github.com/users/codecov-io/repos","events_url":"https://api.github.com/users/codecov-io/events{/privacy}","received_events_url":"https://api.github.com/users/codecov-io/received_events","type":"User","site_admin":false},"created_at":"2018-05-14T22:02:42Z","updated_at":"2018-05-14T22:02:42Z","author_association":"NONE","body":"# [Codecov](https://codecov.io/gh/broadinstitute/gatk/pull/4767?src=pr&el=h1) Report\n> Merging [#4767](https://codecov.io/gh/broadinstitute/gatk/pull/4767?src=pr&el=desc) into [master](https://codecov.io/gh/broadinstitute/gatk/commit/e455fd57e2c1270f250931206ae2bed47711139b?src=pr&el=desc) will **increase** coverage by `0.006%`.\n> The diff coverage is `n/a`.\n\n\n```diff\n@@              Coverage Diff               @@\n##              master    #4767       +/-   ##\n==============================================\n+ Coverage     80.073%   80.08%   +0.006%     \n- Complexity     17420    17422        +2     \n==============================================\n  Files           1080     1080               \n  Lines          63131    63131               \n  Branches       10200    10200               \n==============================================\n+ Hits           50551    50555        +4     \n+ Misses          8587     8583        -4     \n  Partials        3993     3993\n```\n\n\n\n\n| [Impacted Files](https://codecov.io/gh/broadinstitute/gatk/pull/4767?src=pr&el=tree) | Coverage Δ | Complexity Δ | |\n|---|---|---|---|\n| [...utils/smithwaterman/SmithWatermanIntelAligner.java](https://codecov.io/gh/broadinstitute/gatk/pull/4767/diff?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvYnJvYWRpbnN0aXR1dGUvaGVsbGJlbmRlci91dGlscy9zbWl0aHdhdGVybWFuL1NtaXRoV2F0ZXJtYW5JbnRlbEFsaWduZXIuamF2YQ==) | `90% <0%> (+40%)` | `3% <0%> (+2%)` | :arrow_up: |\n"}}
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