{"action":"created","issue":{"url":"https://api.github.com/repos/dellytools/delly/issues/131","repository_url":"https://api.github.com/repos/dellytools/delly","labels_url":"https://api.github.com/repos/dellytools/delly/issues/131/labels{/name}","comments_url":"https://api.github.com/repos/dellytools/delly/issues/131/comments","events_url":"https://api.github.com/repos/dellytools/delly/issues/131/events","html_url":"https://github.com/dellytools/delly/issues/131","id":351139568,"node_id":"MDU6SXNzdWUzNTExMzk1Njg=","number":131,"title":"Error while build from source or conda install delly","user":{"login":"codeunsolved","id":15685119,"node_id":"MDQ6VXNlcjE1Njg1MTE5","avatar_url":"https://avatars2.githubusercontent.com/u/15685119?v=4","gravatar_id":"","url":"https://api.github.com/users/codeunsolved","html_url":"https://github.com/codeunsolved","followers_url":"https://api.github.com/users/codeunsolved/followers","following_url":"https://api.github.com/users/codeunsolved/following{/other_user}","gists_url":"https://api.github.com/users/codeunsolved/gists{/gist_id}","starred_url":"https://api.github.com/users/codeunsolved/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/codeunsolved/subscriptions","organizations_url":"https://api.github.com/users/codeunsolved/orgs","repos_url":"https://api.github.com/users/codeunsolved/repos","events_url":"https://api.github.com/users/codeunsolved/events{/privacy}","received_events_url":"https://api.github.com/users/codeunsolved/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-08-16T10:07:34Z","updated_at":"2018-08-17T15:00:53Z","closed_at":null,"author_association":"NONE","body":"I tried to build delly from source due to\r\n\r\n`conda install delly`\r\n\r\nraises \"PackagesNotFoundError\". I don't know where is the problem when i have bioconda channels. It seems my platform is macOS (not linux-64, which bioconda channel expected).\r\n\r\nWell, build from source is also a good way to go. But i still encounter problems that i can't fix:\r\n\r\nBecause source code lacks `src/htslib`, `src/bcftools` and `src/modular-boost`, So i actually build it on github repo.\r\n\r\nI had tried tags/v0.7.8, tags/v0.7.7 and tags/v0.7.2, they all raise error like below:\r\n\r\n```bash\r\ncd src/modular-boost && ./bootstrap.sh --prefix=/NGS/Software/delly-0.7.8/src/modular-boost --without-icu --with-libraries=iostreams,filesystem,system,program_options,date_time && ./b2 && ./b2 headers && cd ../../ && touch .boost\r\n./bootstrap.sh: line 195: ./tools/build/src/engine/build.sh: No such file or directory\r\nBuilding Boost.Build engine with toolset ...\r\nFailed to build Boost.Build build engine\r\nConsult 'bootstrap.log' for more details\r\nmake: *** [.boost] Error 1\r\n```\r\n\r\nIt seems `modular-boost`'s submodule(tools/build, etc) is empty after i tried ` git submodule update --recursive`.\r\n\r\nWhat should i do (on macOS)? Thanks!"},"comment":{"url":"https://api.github.com/repos/dellytools/delly/issues/comments/413893735","html_url":"https://github.com/dellytools/delly/issues/131#issuecomment-413893735","issue_url":"https://api.github.com/repos/dellytools/delly/issues/131","id":413893735,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMzg5MzczNQ==","user":{"login":"tobiasrausch","id":5946458,"node_id":"MDQ6VXNlcjU5NDY0NTg=","avatar_url":"https://avatars1.githubusercontent.com/u/5946458?v=4","gravatar_id":"","url":"https://api.github.com/users/tobiasrausch","html_url":"https://github.com/tobiasrausch","followers_url":"https://api.github.com/users/tobiasrausch/followers","following_url":"https://api.github.com/users/tobiasrausch/following{/other_user}","gists_url":"https://api.github.com/users/tobiasrausch/gists{/gist_id}","starred_url":"https://api.github.com/users/tobiasrausch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tobiasrausch/subscriptions","organizations_url":"https://api.github.com/users/tobiasrausch/orgs","repos_url":"https://api.github.com/users/tobiasrausch/repos","events_url":"https://api.github.com/users/tobiasrausch/events{/privacy}","received_events_url":"https://api.github.com/users/tobiasrausch/received_events","type":"User","site_admin":false},"created_at":"2018-08-17T15:00:53Z","updated_at":"2018-08-17T15:00:53Z","author_association":"MEMBER","body":"HTSlib was missing in your library path but linking is fine. If ./src/delly shows the help message then all is fine."}}
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