{"action":"closed","issue":{"url":"https://api.github.com/repos/lopatovsky/HMMs/issues/4","repository_url":"https://api.github.com/repos/lopatovsky/HMMs","labels_url":"https://api.github.com/repos/lopatovsky/HMMs/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/lopatovsky/HMMs/issues/4/comments","events_url":"https://api.github.com/repos/lopatovsky/HMMs/issues/4/events","html_url":"https://github.com/lopatovsky/HMMs/issues/4","id":265836959,"node_id":"MDU6SXNzdWUyNjU4MzY5NTk=","number":4,"title":"Cython \"include_dirs\" option causing installation error","user":{"login":"axxe-git","id":2672467,"node_id":"MDQ6VXNlcjI2NzI0Njc=","avatar_url":"https://avatars3.githubusercontent.com/u/2672467?v=4","gravatar_id":"","url":"https://api.github.com/users/axxe-git","html_url":"https://github.com/axxe-git","followers_url":"https://api.github.com/users/axxe-git/followers","following_url":"https://api.github.com/users/axxe-git/following{/other_user}","gists_url":"https://api.github.com/users/axxe-git/gists{/gist_id}","starred_url":"https://api.github.com/users/axxe-git/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/axxe-git/subscriptions","organizations_url":"https://api.github.com/users/axxe-git/orgs","repos_url":"https://api.github.com/users/axxe-git/repos","events_url":"https://api.github.com/users/axxe-git/events{/privacy}","received_events_url":"https://api.github.com/users/axxe-git/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2017-10-16T16:42:16Z","updated_at":"2018-11-24T13:47:16Z","closed_at":"2018-11-24T13:47:16Z","author_association":"NONE","body":"Installation using pip throws the following error. It seems to be caused by the `include_dirs` option of Cython. \r\n\r\n```\r\nCollecting hmms\r\n  Downloading hmms-0.1.tar.gz (412kB)\r\n    100% |████████████████████████████████| 419kB 2.1MB/s \r\n    Complete output from command python setup.py egg_info:\r\n    Traceback (most recent call last):\r\n      File \"<string>\", line 1, in <module>\r\n      File \"/tmp/pip-build-6_n03aco/hmms/setup.py\", line 22, in <module>\r\n        ext_modules=cythonize(glob.glob('hmms/*.pyx'), language_level=3, include_dirs=[numpy.get_include()]),\r\n      File \"/usr/local/lib/python3.5/dist-packages/Cython/Build/Dependencies.py\", line 909, in cythonize\r\n        c_options = CompilationOptions(**options)\r\n      File \"/usr/local/lib/python3.5/dist-packages/Cython/Compiler/Main.py\", line 559, in __init__\r\n        raise ValueError(message)\r\n    ValueError: got unknown compilation option, please remove: include_dirs\r\n    \r\n    ----------------------------------------\r\nCommand \"python setup.py egg_info\" failed with error code 1 in /tmp/pip-build-6_n03aco/hmms/\r\n```\r\n\r\n**VERSION INFO:**\r\nPython 3.5.2\r\nCython==0.27.1\r\nnumpy==1.13.3\r\n"}}
{"actor":{"display_login":"lopatovsky"}}