{"action":"created","issue":{"url":"https://api.github.com/repos/cBioPortal/datahub/issues/354","repository_url":"https://api.github.com/repos/cBioPortal/datahub","labels_url":"https://api.github.com/repos/cBioPortal/datahub/issues/354/labels{/name}","comments_url":"https://api.github.com/repos/cBioPortal/datahub/issues/354/comments","events_url":"https://api.github.com/repos/cBioPortal/datahub/issues/354/events","html_url":"https://github.com/cBioPortal/datahub/pull/354","id":360893513,"node_id":"MDExOlB1bGxSZXF1ZXN0MjE1OTk5ODg2","number":354,"title":"Add gene sets version back in seed database","user":{"login":"sandertan","id":9624990,"node_id":"MDQ6VXNlcjk2MjQ5OTA=","avatar_url":"https://avatars2.githubusercontent.com/u/9624990?v=4","gravatar_id":"","url":"https://api.github.com/users/sandertan","html_url":"https://github.com/sandertan","followers_url":"https://api.github.com/users/sandertan/followers","following_url":"https://api.github.com/users/sandertan/following{/other_user}","gists_url":"https://api.github.com/users/sandertan/gists{/gist_id}","starred_url":"https://api.github.com/users/sandertan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sandertan/subscriptions","organizations_url":"https://api.github.com/users/sandertan/orgs","repos_url":"https://api.github.com/users/sandertan/repos","events_url":"https://api.github.com/users/sandertan/events{/privacy}","received_events_url":"https://api.github.com/users/sandertan/received_events","type":"User","site_admin":false},"labels":[{"id":408158862,"node_id":"MDU6TGFiZWw0MDgxNTg4NjI=","url":"https://api.github.com/repos/cBioPortal/datahub/labels/bug","name":"bug","color":"ee0701","default":true},{"id":835165536,"node_id":"MDU6TGFiZWw4MzUxNjU1MzY=","url":"https://api.github.com/repos/cBioPortal/datahub/labels/critical","name":"critical","color":"b60205","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-09-17T14:23:24Z","updated_at":"2018-09-17T14:57:07Z","closed_at":null,"author_association":"MEMBER","pull_request":{"url":"https://api.github.com/repos/cBioPortal/datahub/pulls/354","html_url":"https://github.com/cBioPortal/datahub/pull/354","diff_url":"https://github.com/cBioPortal/datahub/pull/354.diff","patch_url":"https://github.com/cBioPortal/datahub/pull/354.patch"},"body":"# What?\r\nFix an error when trying to load gene sets, for example when loading study_es_0, with the the previous seed database.\r\n\r\n<img width=\"255\" alt=\"screen shot 2018-09-17 at 16 20 35\" src=\"https://user-images.githubusercontent.com/9624990/45628983-9fe0bf80-ba95-11e8-8934-e69d1ab7c51a.png\">\r\n\r\nThis required a manual step, which is documented but I forgot it last month when I updated the seed.\r\n\r\nThis seed still contains:\r\n- 839 cancer types\r\n- 60070 genes\r\n- 66840 aliases"},"comment":{"url":"https://api.github.com/repos/cBioPortal/datahub/issues/comments/422050297","html_url":"https://github.com/cBioPortal/datahub/pull/354#issuecomment-422050297","issue_url":"https://api.github.com/repos/cBioPortal/datahub/issues/354","id":422050297,"node_id":"MDEyOklzc3VlQ29tbWVudDQyMjA1MDI5Nw==","user":{"login":"sandertan","id":9624990,"node_id":"MDQ6VXNlcjk2MjQ5OTA=","avatar_url":"https://avatars2.githubusercontent.com/u/9624990?v=4","gravatar_id":"","url":"https://api.github.com/users/sandertan","html_url":"https://github.com/sandertan","followers_url":"https://api.github.com/users/sandertan/followers","following_url":"https://api.github.com/users/sandertan/following{/other_user}","gists_url":"https://api.github.com/users/sandertan/gists{/gist_id}","starred_url":"https://api.github.com/users/sandertan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sandertan/subscriptions","organizations_url":"https://api.github.com/users/sandertan/orgs","repos_url":"https://api.github.com/users/sandertan/repos","events_url":"https://api.github.com/users/sandertan/events{/privacy}","received_events_url":"https://api.github.com/users/sandertan/received_events","type":"User","site_admin":false},"created_at":"2018-09-17T14:57:07Z","updated_at":"2018-09-17T14:57:07Z","author_association":"MEMBER","body":"```\r\ncbioportal, authorities, 0\r\ncbioportal, cancer_study, 0\r\ncbioportal, clinical_attribute_meta, 0\r\ncbioportal, clinical_event, 0\r\ncbioportal, clinical_event_data, 0\r\ncbioportal, clinical_patient, 0\r\ncbioportal, clinical_sample, 0\r\ncbioportal, cna_event, 0\r\ncbioportal, copy_number_seg, 0\r\ncbioportal, copy_number_seg_file, 0\r\ncbioportal, cosmic_mutation, 1533793\r\ncbioportal, drug, 8147\r\ncbioportal, drug_interaction, 14472\r\ncbioportal, fraction_genome_altered, 0\r\ncbioportal, gene, 60070\r\ncbioportal, gene_alias, 66840\r\ncbioportal, gene_panel, 1\r\ncbioportal, gene_panel_list, 15\r\ncbioportal, geneset, 17786\r\ncbioportal, geneset_gene, 2430075\r\ncbioportal, geneset_hierarchy_leaf, 17786\r\ncbioportal, geneset_hierarchy_node, 9\r\ncbioportal, genetic_alteration, 0\r\ncbioportal, genetic_entity, 77856\r\ncbioportal, genetic_profile, 0\r\ncbioportal, genetic_profile_link, 0\r\ncbioportal, genetic_profile_samples, 0\r\ncbioportal, gistic, 0\r\ncbioportal, gistic_to_gene, 0\r\ncbioportal, info, 1\r\ncbioportal, interaction, 523978\r\ncbioportal, mut_sig, 0\r\ncbioportal, mutation, 0\r\ncbioportal, mutation_count, 0\r\ncbioportal, mutation_count_by_keyword, 0\r\ncbioportal, mutation_event, 0\r\ncbioportal, patient, 0\r\ncbioportal, pdb_uniprot_alignment, 0\r\ncbioportal, pdb_uniprot_residue_mapping, 0\r\ncbioportal, pfam_graphics, 21361\r\ncbioportal, protein_array_cancer_study, 0\r\ncbioportal, protein_array_data, 0\r\ncbioportal, protein_array_info, 0\r\ncbioportal, protein_array_target, 0\r\ncbioportal, reference_genome, 3\r\ncbioportal, reference_genome_gene, 60070\r\ncbioportal, sample, 0\r\ncbioportal, sample_cna_event, 0\r\ncbioportal, sample_list, 0\r\ncbioportal, sample_list_list, 0\r\ncbioportal, sample_profile, 0\r\ncbioportal, sanger_cancer_census, 0\r\ncbioportal, structural_variant, 0\r\ncbioportal, text_cache, 0\r\ncbioportal, type_of_cancer, 839\r\ncbioportal, uniprot_id_mapping, 18815\r\ncbioportal, users, 0\r\n```"}}
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