{"action":"created","issue":{"url":"https://api.github.com/repos/conda/conda/issues/7646","repository_url":"https://api.github.com/repos/conda/conda","labels_url":"https://api.github.com/repos/conda/conda/issues/7646/labels{/name}","comments_url":"https://api.github.com/repos/conda/conda/issues/7646/comments","events_url":"https://api.github.com/repos/conda/conda/issues/7646/events","html_url":"https://github.com/conda/conda/issues/7646","id":349753498,"node_id":"MDU6SXNzdWUzNDk3NTM0OTg=","number":7646,"title":"Specifications found to be in conflict--but only one package.","user":{"login":"abalter","id":5349876,"node_id":"MDQ6VXNlcjUzNDk4NzY=","avatar_url":"https://avatars2.githubusercontent.com/u/5349876?v=4","gravatar_id":"","url":"https://api.github.com/users/abalter","html_url":"https://github.com/abalter","followers_url":"https://api.github.com/users/abalter/followers","following_url":"https://api.github.com/users/abalter/following{/other_user}","gists_url":"https://api.github.com/users/abalter/gists{/gist_id}","starred_url":"https://api.github.com/users/abalter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/abalter/subscriptions","organizations_url":"https://api.github.com/users/abalter/orgs","repos_url":"https://api.github.com/users/abalter/repos","events_url":"https://api.github.com/users/abalter/events{/privacy}","received_events_url":"https://api.github.com/users/abalter/received_events","type":"User","site_admin":false},"labels":[{"id":360414999,"node_id":"MDU6TGFiZWwzNjA0MTQ5OTk=","url":"https://api.github.com/repos/conda/conda/labels/source-community","name":"source-community","color":"c2e0c6","default":false},{"id":311005392,"node_id":"MDU6TGFiZWwzMTEwMDUzOTI=","url":"https://api.github.com/repos/conda/conda/labels/tag-solver","name":"tag-solver","color":"c5def5","default":false},{"id":450740657,"node_id":"MDU6TGFiZWw0NTA3NDA2NTc=","url":"https://api.github.com/repos/conda/conda/labels/tag-solver_messaging","name":"tag-solver_messaging","color":"c5def5","default":false},{"id":16544530,"node_id":"MDU6TGFiZWwxNjU0NDUzMA==","url":"https://api.github.com/repos/conda/conda/labels/type-bug","name":"type-bug","color":"b60205","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-08-11T18:15:36Z","updated_at":"2018-09-04T06:55:07Z","closed_at":null,"author_association":"NONE","body":"<!--\r\nHi!  Read this; it's important.\r\n\r\nThis is an issue tracker for conda -- the package manager.  File feature requests\r\nfor conda here, as well as bug reports about something conda has messed up.\r\n\r\nIf your issue is a bug report for:\r\n  * a specific conda package from Anaconda ('defaults' channel):\r\n      ==> file at https://github.com/ContinuumIO/anaconda-issues\r\n  * a specific conda package from conda-forge:\r\n      ==> file at the corresponding feedstock under https://github.com/conda-forge\r\n  * repo.anaconda.com access and service:\r\n      ==> file at https://github.com/ContinuumIO/anaconda-issues\r\n  * anaconda.org access and service:\r\n      ==> file at https://anaconda.org/contact/report\r\n  * commands under 'conda build':\r\n      ==> file at https://github.com/conda/conda-build\r\n  * commands under 'conda env':\r\n      ==> please file it here!\r\n  * all other conda commands that start with 'conda':\r\n      ==> please file it here!\r\n\r\nIf you continue on,\r\n\r\n   **please include all requested information below.**\r\n\r\nIf a maintainer determines the information is required to understand \r\nyour issue, and if it is not provided, your issue may be\r\nclosed automatically.\r\n\r\n-->\r\n\r\n## Current Behavior\r\n<!-- What actually happens?\r\n     If you want to include console output, please use \"Steps to Reproduce\" below. -->\r\nWhen I try to install `r-phangorn` I am told that packages are in conflict. But I'm only trying to install one package. \r\n\r\n### Steps to Reproduce\r\n<!-- If the current behavior is a bug, please provide specific, minimal steps to independently reproduce.\r\n     Include the exact conda commands that reproduce the issue and their output between the ticks below. -->\r\n```\r\nbalter@spectre:~$ conda install r-phangorn\r\nSolving environment: failed\r\n\r\nUnsatisfiableError: The following specifications were found to be in conflict:\r\n  - r-phangorn\r\nUse \"conda info <package>\" to see the dependencies for each package.\r\n\r\n```\r\n\r\n\r\n## Expected Behavior\r\n<!-- What do you think should happen? -->\r\nEither `r-phangorn` should install or conda should tell me which package it is in conflict with.\r\n\r\n## Environment Information\r\n<details open><summary><code>`conda info`</code></summary><p>\r\n<!-- between the ticks below, paste the output of 'conda info' -->\r\n\r\n```\r\nbalter@spectre:~$ conda info\r\n\r\n     active environment : None\r\n       user config file : /home/balter/.condarc\r\n populated config files : /home/balter/.condarc\r\n          conda version : 4.5.9\r\n    conda-build version : not installed\r\n         python version : 3.6.2.final.0\r\n       base environment : /home/balter/biotest  (writable)\r\n           channel URLs : https://conda.anaconda.org/bioconda/linux-64\r\n                          https://conda.anaconda.org/bioconda/noarch\r\n                          https://repo.anaconda.com/pkgs/main/linux-64\r\n                          https://repo.anaconda.com/pkgs/main/noarch\r\n                          https://repo.anaconda.com/pkgs/free/linux-64\r\n                          https://repo.anaconda.com/pkgs/free/noarch\r\n                          https://repo.anaconda.com/pkgs/r/linux-64\r\n                          https://repo.anaconda.com/pkgs/r/noarch\r\n                          https://repo.anaconda.com/pkgs/pro/linux-64\r\n                          https://repo.anaconda.com/pkgs/pro/noarch\r\n          package cache : /home/balter/biotest/pkgs\r\n                          /home/balter/.conda/pkgs\r\n       envs directories : /home/balter/biotest/envs\r\n                          /home/balter/.conda/envs\r\n               platform : linux-64\r\n             user-agent : conda/4.5.9 requests/2.14.2 CPython/3.6.2 Linux/4.4.0-17134-Microsoft ubuntu/18.04 glibc/2.27\r\n                UID:GID : 1000:1000\r\n             netrc file : None\r\n           offline mode : False\r\n\r\n```\r\n</p></details>\r\n\r\n\r\n<details open><summary><code>`conda config --show-sources`</code></summary><p>\r\n<!-- between the ticks below, paste the output of 'conda config --show-sources' -->\r\n\r\n```\r\nbalter@spectre:~$ conda config --show-sources\r\n==> /home/balter/.condarc <==\r\nchannels:\r\n  - bioconda\r\n  - defaults\r\n\r\n```\r\n</p></details>\r\n\r\n\r\n<details><summary><code>`conda list --show-channel-urls`</code></summary><p>\r\n<!-- between the ticks below, paste the output of 'conda list --show-channel-urls' -->\r\n\r\n```\r\nbalter@spectre:~$ conda list --show-channel-urls\r\n# packages in environment at /home/balter/biotest:\r\n#\r\n# Name                    Version                   Build  Channel\r\n_r-mutex                  1.0.0               anacondar_1    defaults\r\nasn1crypto                0.22.0                   py36_0    defaults\r\nbioconductor-biobase      2.34.0                 r3.3.2_0    bioconda\r\nbioconductor-biocgenerics 0.22.0                 r3.3.2_0    bioconda\r\nbioconductor-biocinstaller 1.24.0                 r3.3.2_0    bioconda\r\nbioconductor-biocparallel 1.6.6                  r3.3.2_1    bioconda\r\nbioconductor-biocstyle    2.0.3                  r3.3.2_1    bioconda\r\nbioconductor-biomformat   1.2.0                  r3.3.2_1    bioconda\r\nbioconductor-biostrings   2.42.1                 r3.3.2_0    bioconda\r\nbioconductor-dada2        1.4.0                  r3.3.2_0    bioconda\r\nbioconductor-decipher     2.8.1                  r3.3.2_0    cramjaco\r\nbioconductor-genomeinfodb 1.10.3                 r3.3.2_0    bioconda\r\nbioconductor-genomicalignments 1.10.0                 r3.3.2_0    bioconda\r\nbioconductor-genomicranges 1.26.4                 r3.3.2_0    bioconda\r\nbioconductor-iranges      2.8.2                  r3.3.2_0    bioconda\r\nbioconductor-multtest     2.28.0                 r3.3.2_1    bioconda\r\nbioconductor-phyloseq     1.19.1                 r3.3.2_0    bioconda\r\nbioconductor-rhdf5        2.16.0                 r3.3.2_1    bioconda\r\nbioconductor-rsamtools    1.26.1                 r3.3.2_0    bioconda\r\nbioconductor-s4vectors    0.12.2                 r3.3.2_0    bioconda\r\nbioconductor-shortread    1.32.0                 r3.3.2_0    bioconda\r\nbioconductor-summarizedexperiment 1.4.0                  r3.3.2_2    bioconda\r\nbioconductor-xvector      0.14.1                 r3.3.2_0    bioconda\r\nbioconductor-zlibbioc     1.20.0                 r3.3.2_1    bioconda\r\nbzip2                     1.0.6                h14c3975_5    defaults\r\nca-certificates           2018.03.07                    0    defaults\r\ncairo                     1.14.8                        0    defaults\r\ncertifi                   2018.4.16                py36_0    defaults\r\ncffi                      1.10.0                   py36_0    defaults\r\nconda                     4.5.9                    py36_0    defaults\r\nconda-env                 2.6.0                         1    defaults\r\ncryptography              1.8.1                    py36_0    defaults\r\ncurl                      7.55.1               hcb0b314_2    defaults\r\nfontconfig                2.12.1                        3    defaults\r\nfreetype                  2.5.5                         2    defaults\r\nglib                      2.50.2                        1    defaults\r\ngmp                       6.1.2                h6c8ec71_1    defaults\r\ngsl                       2.4                  h14c3975_4    defaults\r\nharfbuzz                  0.9.39                        2    defaults\r\nicu                       54.1                          0    defaults\r\nidna                      2.6                      py36_0    defaults\r\njpeg                      9b                   h024ee3a_2    defaults\r\nlibffi                    3.2.1                         1    defaults\r\nlibgcc                    7.2.0                h69d50b8_2    defaults\r\nlibgcc-ng                 7.2.0                hdf63c60_3    defaults\r\nlibiconv                  1.14                          0    defaults\r\nlibpng                    1.6.34               hb9fc6fc_0    defaults\r\nlibssh2                   1.8.0                h8c220ad_2    defaults\r\nlibstdcxx-ng              7.2.0                hdf63c60_3    defaults\r\nlibtiff                   4.0.9                he85c1e1_1    defaults\r\nlibxml2                   2.9.4                         0    defaults\r\nncurses                   5.9                          10    defaults\r\nopenssl                   1.0.2o               h14c3975_1    defaults\r\npackaging                 16.8                     py36_0    defaults\r\npango                     1.40.3                        1    defaults\r\npcre                      8.39                          1    defaults\r\npip                       9.0.1                    py36_1    defaults\r\npixman                    0.34.0               hceecf20_3    defaults\r\npycosat                   0.6.3            py36h14c3975_0    defaults\r\npycparser                 2.18                     py36_0    defaults\r\npyopenssl                 17.0.0                   py36_0    defaults\r\npyparsing                 2.2.0                    py36_0    defaults\r\npython                    3.6.2                         0    defaults\r\nr-ade4                    1.7_2                  r3.3.2_0    bioconda\r\nr-ape                     4.0                    r3.3.2_0    defaults\r\nr-assertthat              0.1                    r3.3.2_4    defaults\r\nr-base                    3.3.2                         1    defaults\r\nr-bh                      1.60.0_2               r3.3.2_0    bioconda\r\nr-bitops                  1.0_6                  r3.3.2_2    defaults\r\nr-cluster                 2.0.5                  r3.3.2_0    defaults\r\nr-codetools               0.2_15                 r3.3.2_0    defaults\r\nr-colorspace              1.3_1                  r3.3.2_0    defaults\r\nr-data.table              1.10.4                 r3.3.2_0    bioconda\r\nr-dbi                     0.5_1                  r3.3.2_0    defaults\r\nr-dichromat               2.0_0                  r3.3.2_2    defaults\r\nr-digest                  0.6.12                 r3.3.2_0    bioconda\r\nr-doparallel              1.0.10                 r3.3.2_0    defaults\r\nr-evaluate                0.10                   r3.3.2_0    defaults\r\nr-foreach                 1.4.3                  r3.3.2_0    defaults\r\nr-formatr                 1.4                    r3.3.2_0    defaults\r\nr-futile.logger           1.4.1                  r3.3.2_0    bioconda\r\nr-futile.options          1.0.0                  r3.3.2_0    bioconda\r\nr-ggplot2                 2.2.1                  r3.3.2_0    bioconda\r\nr-gridbase                0.4_7                  r3.3.2_0    defaults\r\nr-gridextra               2.2.1                  r3.3.2_0    defaults\r\nr-gtable                  0.2.0                  r3.3.2_0    defaults\r\nr-highr                   0.6                    r3.3.2_0    defaults\r\nr-hwriter                 1.3.2                  r3.3.2_0    bioconda\r\nr-igraph                  1.0.1                  r3.3.2_0    defaults\r\nr-irlba                   2.1.2                  r3.3.2_0    defaults\r\nr-iterators               1.0.8                  r3.3.2_0    defaults\r\nr-jsonlite                0.9.19                 r3.3.2_1    bioconda\r\nr-knitr                   1.12.3                 r3.3.2_0    bioconda\r\nr-labeling                0.3                    r3.3.2_2    defaults\r\nr-lambda.r                1.1.7                  r3.3.2_0    bioconda\r\nr-lattice                 0.20_34                r3.3.2_0    defaults\r\nr-latticeextra            0.6_28                 r3.3.2_0    defaults\r\nr-lazyeval                0.2.0                  r3.3.2_0    defaults\r\nr-magrittr                1.5                    r3.3.2_2    defaults\r\nr-markdown                0.7.7                  r3.3.2_2    defaults\r\nr-mass                    7.3_45                 r3.3.2_0    defaults\r\nr-matrix                  1.2_7.1                r3.3.2_0    defaults\r\nr-memoise                 1.0.0                  r3.3.2_0    defaults\r\nr-mgcv                    1.8_16                 r3.3.2_0    defaults\r\nr-mime                    0.5                    r3.3.2_0    defaults\r\nr-munsell                 0.4.3                  r3.3.2_0    defaults\r\nr-nlme                    3.1_128                r3.3.2_0    defaults\r\nr-nmf                     0.20.6                 r3.3.2_0    defaults\r\nr-permute                 0.8_4                  r3.3.2_0    bioconda\r\nr-pkgmaker                0.22                   r3.3.2_0    defaults\r\nr-plogr                   0.1_1                  r3.3.2_0    defaults\r\nr-plyr                    1.8.4                  r3.3.2_0    defaults\r\nr-rcolorbrewer            1.1_2                  r3.3.2_3    defaults\r\nr-rcpp                    0.12.8                 r3.3.2_0    defaults\r\nr-rcppparallel            4.3.20                 r3.3.2_1    bioconda\r\nr-rcurl                   1.95_4.8               r3.3.2_0    defaults\r\nr-registry                0.3                    r3.3.2_0    defaults\r\nr-reshape2                1.4.2                  r3.3.2_0    defaults\r\nr-rngtools                1.2.4                  r3.3.2_0    defaults\r\nr-rsqlite                 1.1_1                  r3.3.2_0    defaults\r\nr-scales                  0.4.1                  r3.3.2_1    bioconda\r\nr-snow                    0.4_1                  r3.3.2_0    bioconda\r\nr-stringi                 1.1.2                  r3.3.2_0    defaults\r\nr-stringr                 1.1.0                  r3.3.2_0    defaults\r\nr-survival                2.40_1                 r3.3.2_0    defaults\r\nr-tibble                  1.2                    r3.3.2_1    bioconda\r\nr-vegan                   2.3_4                  r3.3.2_2    bioconda\r\nr-xtable                  1.8_2                  r3.3.2_0    defaults\r\nr-yaml                    2.1.13                 r3.3.2_1    bioconda\r\nreadline                  6.2                           2    defaults\r\nrequests                  2.14.2                   py36_0    defaults\r\nruamel_yaml               0.11.14                  py36_1    defaults\r\nsetuptools                36.4.0                   py36_1    defaults\r\nsix                       1.10.0                   py36_0    defaults\r\nsqlite                    3.13.0                        0    defaults\r\ntk                        8.5.18                        0    defaults\r\nwheel                     0.29.0                   py36_0    defaults\r\nxz                        5.2.3                         0    defaults\r\nyaml                      0.1.6                         0    defaults\r\nzlib                      1.2.11                        0    defaults\r\n\r\n```\r\n</p></details>\r\n"},"comment":{"url":"https://api.github.com/repos/conda/conda/issues/comments/418260673","html_url":"https://github.com/conda/conda/issues/7646#issuecomment-418260673","issue_url":"https://api.github.com/repos/conda/conda/issues/7646","id":418260673,"node_id":"MDEyOklzc3VlQ29tbWVudDQxODI2MDY3Mw==","user":{"login":"kalefranz","id":1418419,"node_id":"MDQ6VXNlcjE0MTg0MTk=","avatar_url":"https://avatars0.githubusercontent.com/u/1418419?v=4","gravatar_id":"","url":"https://api.github.com/users/kalefranz","html_url":"https://github.com/kalefranz","followers_url":"https://api.github.com/users/kalefranz/followers","following_url":"https://api.github.com/users/kalefranz/following{/other_user}","gists_url":"https://api.github.com/users/kalefranz/gists{/gist_id}","starred_url":"https://api.github.com/users/kalefranz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kalefranz/subscriptions","organizations_url":"https://api.github.com/users/kalefranz/orgs","repos_url":"https://api.github.com/users/kalefranz/repos","events_url":"https://api.github.com/users/kalefranz/events{/privacy}","received_events_url":"https://api.github.com/users/kalefranz/received_events","type":"User","site_admin":false},"created_at":"2018-09-04T06:55:07Z","updated_at":"2018-09-04T06:55:07Z","author_association":"MEMBER","body":"@abalter FWIW, I am able to get a solution via\r\n\r\n    conda create --dry-run -qnx -c bioconda -c conda-forge --override-channels r-phangorn\r\n\r\nI guess that was on master, but I wouldn't expect a different result on 4.5.x."}}
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