{"action":"opened","issue":{"url":"https://api.github.com/repos/vatlab/VariantTools/issues/88","repository_url":"https://api.github.com/repos/vatlab/VariantTools","labels_url":"https://api.github.com/repos/vatlab/VariantTools/issues/88/labels{/name}","comments_url":"https://api.github.com/repos/vatlab/VariantTools/issues/88/comments","events_url":"https://api.github.com/repos/vatlab/VariantTools/issues/88/events","html_url":"https://github.com/vatlab/VariantTools/issues/88","id":374327030,"node_id":"MDU6SXNzdWUzNzQzMjcwMzA=","number":88,"title":"Dockerized variant tools fails to run SKAT association test","user":{"login":"kromanenkov","id":14091872,"node_id":"MDQ6VXNlcjE0MDkxODcy","avatar_url":"https://avatars3.githubusercontent.com/u/14091872?v=4","gravatar_id":"","url":"https://api.github.com/users/kromanenkov","html_url":"https://github.com/kromanenkov","followers_url":"https://api.github.com/users/kromanenkov/followers","following_url":"https://api.github.com/users/kromanenkov/following{/other_user}","gists_url":"https://api.github.com/users/kromanenkov/gists{/gist_id}","starred_url":"https://api.github.com/users/kromanenkov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kromanenkov/subscriptions","organizations_url":"https://api.github.com/users/kromanenkov/orgs","repos_url":"https://api.github.com/users/kromanenkov/repos","events_url":"https://api.github.com/users/kromanenkov/events{/privacy}","received_events_url":"https://api.github.com/users/kromanenkov/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-10-26T10:41:01Z","updated_at":"2018-10-26T10:41:01Z","closed_at":null,"author_association":"NONE","body":"Variant tools presented in mdabioinfo/varianttools image is based on python3.5. Running SKAT association in this way:\r\n`vtools associate variant -m \"SKAT\" ...`\r\nleads to\r\n\"Failed to load association test SKAT: a bytes-like object is required, not „str”.Please use command «vtools show tests» to list usable tests\" error.\r\n\r\nWhen python2.7 based variant tools is installed (with pip) everything works fine."}}
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