{"action":"created","issue":{"url":"https://api.github.com/repos/nygenome/lancet/issues/18","repository_url":"https://api.github.com/repos/nygenome/lancet","labels_url":"https://api.github.com/repos/nygenome/lancet/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/nygenome/lancet/issues/18/comments","events_url":"https://api.github.com/repos/nygenome/lancet/issues/18/events","html_url":"https://github.com/nygenome/lancet/issues/18","id":314795392,"number":18,"title":"compile errors with v1.0.6","user":{"login":"RichardCorbett","id":9285915,"avatar_url":"https://avatars1.githubusercontent.com/u/9285915?v=4","gravatar_id":"","url":"https://api.github.com/users/RichardCorbett","html_url":"https://github.com/RichardCorbett","followers_url":"https://api.github.com/users/RichardCorbett/followers","following_url":"https://api.github.com/users/RichardCorbett/following{/other_user}","gists_url":"https://api.github.com/users/RichardCorbett/gists{/gist_id}","starred_url":"https://api.github.com/users/RichardCorbett/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/RichardCorbett/subscriptions","organizations_url":"https://api.github.com/users/RichardCorbett/orgs","repos_url":"https://api.github.com/users/RichardCorbett/repos","events_url":"https://api.github.com/users/RichardCorbett/events{/privacy}","received_events_url":"https://api.github.com/users/RichardCorbett/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-04-16T19:56:19Z","updated_at":"2018-04-16T20:47:53Z","closed_at":null,"author_association":"NONE","body":"Hi there,\r\nThis was my first time trying to compile and I'm on Centos 7. \r\n\r\nMy make command seemed to be working fine until...\r\n\r\n```\r\n...\r\ngcc -pthread   -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -lz  \r\nmake[1]: Leaving directory `/home/rcorbett/bin/lancet-1.0.6/htslib-1.3'\r\ncd src; make; cp lancet ../; cd ../\r\nmake[1]: Entering directory `/home/rcorbett/bin/lancet-1.0.6/src'\r\ng++ -std=c++0x -Wno-deprecated -Wall -O3 -fexceptions -g -Wl,-rpath,/home/rcorbett/bin/lancet-1.0.6/bamtools-2.3.0/lib/ -I/home/rcorbett/bin/lancet-1.0.6/bamtools-2.3.0/include/ -I/home/rcorbett/bin/lancet-1.0.6/htslib-1.3/ -L/home/rcorbett/bin/lancet-1.0.6/bamtools-2.3.0/lib/ -L/home/rcorbett/bin/lancet-1.0.6/htslib-1.3/ Lancet.cc Edge.cc Node.cc Graph.cc Microassembler.cc Ref.cc Path.cc ContigLink.cc align.cc util.cc sha256.cc VariantDB.cc Variant.cc -o lancet /home/rcorbett/bin/lancet-1.0.6/htslib-1.3/libhts.a -lz -ldl -lbamtools -lpthread\r\nIn file included from Lancet.hh:27:0,\r\n                 from Lancet.cc:1:\r\nMicroassembler.hh:43:27: fatal error: api/BamReader.h: No such file or directory\r\n #include \"api/BamReader.h\"\r\n                           ^\r\ncompilation terminated.\r\nIn file included from Mer.hh:28:0,\r\n                 from Edge.hh:32,\r\n                 from Edge.cc:1:\r\nutil.hh:32:27: fatal error: api/BamReader.h: No such file or directory\r\n #include \"api/BamReader.h\"\r\n                           ^\r\ncompilation terminated.\r\n...\r\n```\r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/nygenome/lancet/issues/comments/381744043","html_url":"https://github.com/nygenome/lancet/issues/18#issuecomment-381744043","issue_url":"https://api.github.com/repos/nygenome/lancet/issues/18","id":381744043,"user":{"login":"RichardCorbett","id":9285915,"avatar_url":"https://avatars1.githubusercontent.com/u/9285915?v=4","gravatar_id":"","url":"https://api.github.com/users/RichardCorbett","html_url":"https://github.com/RichardCorbett","followers_url":"https://api.github.com/users/RichardCorbett/followers","following_url":"https://api.github.com/users/RichardCorbett/following{/other_user}","gists_url":"https://api.github.com/users/RichardCorbett/gists{/gist_id}","starred_url":"https://api.github.com/users/RichardCorbett/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/RichardCorbett/subscriptions","organizations_url":"https://api.github.com/users/RichardCorbett/orgs","repos_url":"https://api.github.com/users/RichardCorbett/repos","events_url":"https://api.github.com/users/RichardCorbett/events{/privacy}","received_events_url":"https://api.github.com/users/RichardCorbett/received_events","type":"User","site_admin":false},"created_at":"2018-04-16T20:47:53Z","updated_at":"2018-04-16T20:47:53Z","author_association":"NONE","body":"Thanks. It was indeed a problem with cmake."}}
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