{"action":"opened","issue":{"url":"https://api.github.com/repos/jts/nanopolish/issues/379","repository_url":"https://api.github.com/repos/jts/nanopolish","labels_url":"https://api.github.com/repos/jts/nanopolish/issues/379/labels{/name}","comments_url":"https://api.github.com/repos/jts/nanopolish/issues/379/comments","events_url":"https://api.github.com/repos/jts/nanopolish/issues/379/events","html_url":"https://github.com/jts/nanopolish/issues/379","id":321239437,"number":379,"title":"Missed polish segments","user":{"login":"lye2","id":32774666,"avatar_url":"https://avatars0.githubusercontent.com/u/32774666?v=4","gravatar_id":"","url":"https://api.github.com/users/lye2","html_url":"https://github.com/lye2","followers_url":"https://api.github.com/users/lye2/followers","following_url":"https://api.github.com/users/lye2/following{/other_user}","gists_url":"https://api.github.com/users/lye2/gists{/gist_id}","starred_url":"https://api.github.com/users/lye2/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lye2/subscriptions","organizations_url":"https://api.github.com/users/lye2/orgs","repos_url":"https://api.github.com/users/lye2/repos","events_url":"https://api.github.com/users/lye2/events{/privacy}","received_events_url":"https://api.github.com/users/lye2/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-05-08T15:38:06Z","updated_at":"2018-05-08T15:38:06Z","closed_at":null,"author_association":"NONE","body":"nanopolish version 0.9.0\r\n\r\nI am polishing the draft assembly for a large grass genome. Only four contigs have similar errors as below. If run the whole contigs without segments, I got the same error. Could you recommend how to fix it? \r\n\r\nnanopolish: src/nanopolish_haplotype.cpp:113: Haplotype Haplotype::substr_by_reference(size_t, size_t) const: Assertion `derived_base_end != m_coordinate_map.size()' failed.\r\n.lsbatch/1525787652.4215321.shell: line 1: 124615 Aborted\r\n"}}
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