{"action":"opened","issue":{"url":"https://api.github.com/repos/BorgwardtLab/GraphKernels/issues/17","repository_url":"https://api.github.com/repos/BorgwardtLab/GraphKernels","labels_url":"https://api.github.com/repos/BorgwardtLab/GraphKernels/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/BorgwardtLab/GraphKernels/issues/17/comments","events_url":"https://api.github.com/repos/BorgwardtLab/GraphKernels/issues/17/events","html_url":"https://github.com/BorgwardtLab/GraphKernels/issues/17","id":341121006,"node_id":"MDU6SXNzdWUzNDExMjEwMDY=","number":17,"title":"Eigen3 dependency issue","user":{"login":"varunshiva","id":21370999,"node_id":"MDQ6VXNlcjIxMzcwOTk5","avatar_url":"https://avatars3.githubusercontent.com/u/21370999?v=4","gravatar_id":"","url":"https://api.github.com/users/varunshiva","html_url":"https://github.com/varunshiva","followers_url":"https://api.github.com/users/varunshiva/followers","following_url":"https://api.github.com/users/varunshiva/following{/other_user}","gists_url":"https://api.github.com/users/varunshiva/gists{/gist_id}","starred_url":"https://api.github.com/users/varunshiva/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/varunshiva/subscriptions","organizations_url":"https://api.github.com/users/varunshiva/orgs","repos_url":"https://api.github.com/users/varunshiva/repos","events_url":"https://api.github.com/users/varunshiva/events{/privacy}","received_events_url":"https://api.github.com/users/varunshiva/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-13T18:42:20Z","updated_at":"2018-07-13T18:42:20Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nWhere does graphkernels require eigen to be installed at. I haven't installed Eigen at `/usr/local/`(default, I believe) because of a lack of `sudo` privileges. But rather installed it to my favourite location and added it to my `$PATH`. I get the following error when I `pip install` or `setup.py install` it.\r\n\r\nI get the following error.\r\n\r\nTraceback (most recent call last):\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 154, in save_modules\r\n    yield saved\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 195, in setup_context\r\n    yield\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 250, in run_setup\r\n    _execfile(setup_script, ns)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 45, in _execfile\r\n    exec(code, globals, locals)\r\n  File \"/tmp/easy_install-v7o9ddts/GKextCPy-0.4.1/setup.py\", line 41, in <module>\r\n  File \"/tmp/easy_install-v7o9ddts/GKextCPy-0.4.1/setup.py\", line 27, in get_include_dirs\r\nException: Missing `eigen3` library. Please install it using the package manager of your operating system\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n  File \"setup.py\", line 13, in <module>\r\n    package_data={'graphkernels': ['data.mutag']},\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/__init__.py\", line 129, in setup\r\n    return distutils.core.setup(**attrs)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/distutils/core.py\", line 148, in setup\r\n    dist.run_commands()\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/distutils/dist.py\", line 955, in run_commands\r\n    self.run_command(cmd)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/distutils/dist.py\", line 974, in run_command\r\n    cmd_obj.run()\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/install.py\", line 67, in run\r\n    self.do_egg_install()\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/install.py\", line 117, in do_egg_install\r\n    cmd.run()\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 412, in run\r\n    self.easy_install(spec, not self.no_deps)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 654, in easy_install\r\n    return self.install_item(None, spec, tmpdir, deps, True)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 701, in install_item\r\n    self.process_distribution(spec, dist, deps)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 746, in process_distribution\r\n    [requirement], self.local_index, self.easy_install\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/pkg_resources/__init__.py\", line 881, in resolve\r\n    replace_conflicting=replace_conflicting\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/pkg_resources/__init__.py\", line 1164, in best_match\r\n    return self.obtain(req, installer)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/pkg_resources/__init__.py\", line 1176, in obtain\r\n    return installer(requirement)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 673, in easy_install\r\n    return self.install_item(spec, dist.location, tmpdir, deps)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 699, in install_item\r\n    dists = self.install_eggs(spec, download, tmpdir)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 884, in install_eggs\r\n    return self.build_and_install(setup_script, setup_base)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 1152, in build_and_install\r\n    self.run_setup(setup_script, setup_base, args)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/command/easy_install.py\", line 1138, in run_setup\r\n    run_setup(setup_script, args)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 253, in run_setup\r\n    raise\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/contextlib.py\", line 99, in __exit__\r\n    self.gen.throw(type, value, traceback)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 195, in setup_context\r\n    yield\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/contextlib.py\", line 99, in __exit__\r\n    self.gen.throw(type, value, traceback)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 166, in save_modules\r\n    saved_exc.resume()\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 141, in resume\r\n    six.reraise(type, exc, self._tb)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/pkg_resources/_vendor/six.py\", line 685, in reraise\r\n    raise value.with_traceback(tb)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 154, in save_modules\r\n    yield saved\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 195, in setup_context\r\n    yield\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 250, in run_setup\r\n    _execfile(setup_script, ns)\r\n  File \"/home/shivava1/anaconda3/lib/python3.6/site-packages/setuptools/sandbox.py\", line 45, in _execfile\r\n    exec(code, globals, locals)\r\n  File \"/tmp/easy_install-v7o9ddts/GKextCPy-0.4.1/setup.py\", line 41, in <module>\r\n  File \"/tmp/easy_install-v7o9ddts/GKextCPy-0.4.1/setup.py\", line 27, in get_include_dirs\r\nException: Missing `eigen3` library. Please install it using the package manager of your operating system\r\n\r\n\r\nPlease advice\r\n"}}
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