{"action":"created","issue":{"url":"https://api.github.com/repos/ofgulban/segmentator/issues/76","repository_url":"https://api.github.com/repos/ofgulban/segmentator","labels_url":"https://api.github.com/repos/ofgulban/segmentator/issues/76/labels{/name}","comments_url":"https://api.github.com/repos/ofgulban/segmentator/issues/76/comments","events_url":"https://api.github.com/repos/ofgulban/segmentator/issues/76/events","html_url":"https://github.com/ofgulban/segmentator/issues/76","id":337830683,"node_id":"MDU6SXNzdWUzMzc4MzA2ODM=","number":76,"title":"Can't make new version run","user":{"login":"katjaq","id":6297454,"node_id":"MDQ6VXNlcjYyOTc0NTQ=","avatar_url":"https://avatars3.githubusercontent.com/u/6297454?v=4","gravatar_id":"","url":"https://api.github.com/users/katjaq","html_url":"https://github.com/katjaq","followers_url":"https://api.github.com/users/katjaq/followers","following_url":"https://api.github.com/users/katjaq/following{/other_user}","gists_url":"https://api.github.com/users/katjaq/gists{/gist_id}","starred_url":"https://api.github.com/users/katjaq/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/katjaq/subscriptions","organizations_url":"https://api.github.com/users/katjaq/orgs","repos_url":"https://api.github.com/users/katjaq/repos","events_url":"https://api.github.com/users/katjaq/events{/privacy}","received_events_url":"https://api.github.com/users/katjaq/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-03T10:06:07Z","updated_at":"2018-07-03T10:41:37Z","closed_at":null,"author_association":"NONE","body":"Hello,\r\n\r\nI was very happy using segmentator \\ö/ great tool! However, I cannot seem to get the new version running.\r\nI synced on the master branch, and followed the instructions in your ReadMe. All console logs seem happy, however, when trying to run segmentator, I get the following error:\r\n```ModuleNotFoundError: No module named 'segmentator.deriche_3D'\r\n```\r\nmy complete console log:\r\n=================\r\nSegmentator 1.5.2\r\n=================\r\nDefault GUI is selected.\r\n/anaconda3/lib/python3.6/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`.\r\n  from ._conv import register_converters as _register_converters\r\nTraceback (most recent call last):\r\n  File \"/anaconda3/bin/segmentator\", line 11, in <module>\r\n    load_entry_point('segmentator==1.5.2', 'console_scripts', 'segmentator')()\r\n  File \"/Users/katja/code/segmentator/segmentator/__main__.py\", line 173, in main\r\n    import segmentator.segmentator_main\r\n  File \"/Users/katja/code/segmentator/segmentator/segmentator_main.py\", line 31, in <module>\r\n    from segmentator.utils import map_ima_to_2D_hist, prep_2D_hist\r\n  File \"/Users/katja/code/segmentator/segmentator/utils.py\", line 28, in <module>\r\n    from segmentator.deriche_prepare import Deriche_Gradient_Magnitude\r\n  File \"/Users/katja/code/segmentator/segmentator/deriche_prepare.py\", line 22, in <module>\r\n    from segmentator.deriche_3D import deriche_3D\r\nModuleNotFoundError: No module named 'segmentator.deriche_3D'\r\n\r\nmy system: \r\nMac OS High Sierra Version 10.13.5 (17F77)\r\n\r\nMany thanks in advance for your help.\r\n\r\nBest\r\nkatja\r\n"},"comment":{"url":"https://api.github.com/repos/ofgulban/segmentator/issues/comments/402103093","html_url":"https://github.com/ofgulban/segmentator/issues/76#issuecomment-402103093","issue_url":"https://api.github.com/repos/ofgulban/segmentator/issues/76","id":402103093,"node_id":"MDEyOklzc3VlQ29tbWVudDQwMjEwMzA5Mw==","user":{"login":"ingo-m","id":10960892,"node_id":"MDQ6VXNlcjEwOTYwODky","avatar_url":"https://avatars0.githubusercontent.com/u/10960892?v=4","gravatar_id":"","url":"https://api.github.com/users/ingo-m","html_url":"https://github.com/ingo-m","followers_url":"https://api.github.com/users/ingo-m/followers","following_url":"https://api.github.com/users/ingo-m/following{/other_user}","gists_url":"https://api.github.com/users/ingo-m/gists{/gist_id}","starred_url":"https://api.github.com/users/ingo-m/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ingo-m/subscriptions","organizations_url":"https://api.github.com/users/ingo-m/orgs","repos_url":"https://api.github.com/users/ingo-m/repos","events_url":"https://api.github.com/users/ingo-m/events{/privacy}","received_events_url":"https://api.github.com/users/ingo-m/received_events","type":"User","site_admin":false},"created_at":"2018-07-03T10:41:36Z","updated_at":"2018-07-03T10:41:36Z","author_association":"COLLABORATOR","body":"@katjaq I think this is related to python 3.6. I just installed the latest version of segmentator (from branch master) on a macOS with High Sierra Version 10.13.5 in Python 2.7, and it works fine. Could you try in python 2.7? (I.e. create a conda environment with `conda create -n segmentator_env pip numpy scipy python=2.7`, followed by the regular installation steps, i.e. `pip install -r requirements.txt` and `python setup.py install`)?"}}
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