{"action":"closed","issue":{"url":"https://api.github.com/repos/Lafond-LapalmeJ/MCSC_Decontamination/issues/26","repository_url":"https://api.github.com/repos/Lafond-LapalmeJ/MCSC_Decontamination","labels_url":"https://api.github.com/repos/Lafond-LapalmeJ/MCSC_Decontamination/issues/26/labels{/name}","comments_url":"https://api.github.com/repos/Lafond-LapalmeJ/MCSC_Decontamination/issues/26/comments","events_url":"https://api.github.com/repos/Lafond-LapalmeJ/MCSC_Decontamination/issues/26/events","html_url":"https://github.com/Lafond-LapalmeJ/MCSC_Decontamination/issues/26","id":326574838,"node_id":"MDU6SXNzdWUzMjY1NzQ4Mzg=","number":26,"title":"Use of uninitialized value in substr at get_taxa_from_diamond.pl line 96 (#1)","user":{"login":"desmondramirez","id":6562601,"node_id":"MDQ6VXNlcjY1NjI2MDE=","avatar_url":"https://avatars1.githubusercontent.com/u/6562601?v=4","gravatar_id":"","url":"https://api.github.com/users/desmondramirez","html_url":"https://github.com/desmondramirez","followers_url":"https://api.github.com/users/desmondramirez/followers","following_url":"https://api.github.com/users/desmondramirez/following{/other_user}","gists_url":"https://api.github.com/users/desmondramirez/gists{/gist_id}","starred_url":"https://api.github.com/users/desmondramirez/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/desmondramirez/subscriptions","organizations_url":"https://api.github.com/users/desmondramirez/orgs","repos_url":"https://api.github.com/users/desmondramirez/repos","events_url":"https://api.github.com/users/desmondramirez/events{/privacy}","received_events_url":"https://api.github.com/users/desmondramirez/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-05-25T15:43:47Z","updated_at":"2018-08-14T14:46:27Z","closed_at":"2018-08-14T14:46:27Z","author_association":"NONE","body":"Hi,\r\n\r\nI'm trying to run MCSC decontamination, but keep getting errors when the script tries to use the get_taxa_from_diamond.pl script. As of diamond 0.9.19, the diamond database format is different from previous versions (e.g. 0.8.22, which seems to be what was used to create the test diamond database). Is it possible that the database update has broken the perl script?\r\n\r\nThe errors are : \"Use of uninitialized value in substr\" and \"Use of uninitialized value in concatenation (.) or string\" at line 96 of the get_taxa_from_diamond.pl script.\r\n\r\nI suppose I can install an older version of diamond to make the script work, but any other suggestions are greatly appreciated.\r\n\r\nThanks,\r\nDes"}}
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