{"action":"opened","issue":{"url":"https://api.github.com/repos/MobleyLab/Lomap/issues/35","repository_url":"https://api.github.com/repos/MobleyLab/Lomap","labels_url":"https://api.github.com/repos/MobleyLab/Lomap/issues/35/labels{/name}","comments_url":"https://api.github.com/repos/MobleyLab/Lomap/issues/35/comments","events_url":"https://api.github.com/repos/MobleyLab/Lomap/issues/35/events","html_url":"https://github.com/MobleyLab/Lomap/issues/35","id":341088539,"node_id":"MDU6SXNzdWUzNDEwODg1Mzk=","number":35,"title":"Output problems for example.py and import problems for dbmol.py","user":{"login":"qfyu","id":41125050,"node_id":"MDQ6VXNlcjQxMTI1MDUw","avatar_url":"https://avatars0.githubusercontent.com/u/41125050?v=4","gravatar_id":"","url":"https://api.github.com/users/qfyu","html_url":"https://github.com/qfyu","followers_url":"https://api.github.com/users/qfyu/followers","following_url":"https://api.github.com/users/qfyu/following{/other_user}","gists_url":"https://api.github.com/users/qfyu/gists{/gist_id}","starred_url":"https://api.github.com/users/qfyu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/qfyu/subscriptions","organizations_url":"https://api.github.com/users/qfyu/orgs","repos_url":"https://api.github.com/users/qfyu/repos","events_url":"https://api.github.com/users/qfyu/events{/privacy}","received_events_url":"https://api.github.com/users/qfyu/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-13T16:49:30Z","updated_at":"2018-07-13T16:49:30Z","closed_at":null,"author_association":"NONE","body":"Dear Lomap,\r\n\r\nI had some problems when I tried to run the python scripts of lomap, please see the following for detial.\r\n\r\n(1) #LINUX VERSION\r\nLSB Version:\tcore-2.0-noarch:core-3.2-noarch:core-4.0-noarch:core-2.0-x86_64:core-3.2-x86_64:core-4.0-x86_64:desktop-4.0-amd64:desktop-4.0-noarch:graphics-2.0-amd64:graphics-2.0-noarch:graphics-3.2-amd64:graphics-3.2-noarch:graphics-4.0-amd64:graphics-4.0-noarch\r\nDistributor ID:\tSUSE LINUX\r\nDescription:\tSUSE Linux Enterprise Server 11 (x86_64)\r\nRelease:\t11\r\nCodename:\tn/a\r\n\r\n(2) #LOMAP INSTALLATION\r\nconda config --add channels nividic\r\nconda create -c nividic -n my-lomap lomap\r\nsource activate my-lomap\r\n\r\n#all prerequisites were installed \r\nconda list\r\nboost                     1.56.0                   py34_1    \t  nividic\r\ngraphviz                2.38.0                   1              \t  mobleylab\r\nlomap                    0.0.0                     py34_0    \t  nividic\r\npygraphviz            1.4rc1                   py34_0    \t  nividic\r\nrdkit                       2015.09.2             np110py34_0  nividic\r\nmatplotlib              1.5.1                     np110py34_0\r\nnetworkx               1.11                      py34_0\r\npyqt                       4.11.4                   py34_4\r\n…..\r\n\r\n(3) python example.py\r\n#basic or radial \r\n#db_mol = lomap.DBMolecules('test/basic/', output=True)\r\n#db_mol = lomap.DBMolecules('test/radial/', output=True)\r\n#outputs are as following\r\nout.txt\r\nout_score_with_connection.txt\r\nmcs.png\r\n\r\nQuestion One: Why didn’t the script output all results? Such as out.png, out.pickle, out.pdf, out.eps, and out.doc? \r\n\r\n(4) #open dbmol.py and input commands \r\npython \r\n>>> from lomap import mcs\r\nTraceback (most recent call last):\r\n  File \"<stdin>\", line 1, in <module>\r\nImportError: cannot import name 'mcs'\r\n>>> from lomap import graphgen\r\nTraceback (most recent call last):\r\n  File \"<stdin>\", line 1, in <module>\r\nImportError: cannot import name 'graphgen'\r\n\r\nQuestion Two: What caused these problems and how to solve them?\r\n \r\nThank you and look forward to your reply.\r\n"}}
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