{"action":"created","issue":{"url":"https://api.github.com/repos/BD2KGenomics/toil/issues/2086","repository_url":"https://api.github.com/repos/BD2KGenomics/toil","labels_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/2086/labels{/name}","comments_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/2086/comments","events_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/2086/events","html_url":"https://github.com/BD2KGenomics/toil/pull/2086","id":300423098,"number":2086,"title":"Eliminate bd2k dependencies.  Partially addresses #1936.","user":{"login":"DailyDreaming","id":20567496,"avatar_url":"https://avatars3.githubusercontent.com/u/20567496?v=4","gravatar_id":"","url":"https://api.github.com/users/DailyDreaming","html_url":"https://github.com/DailyDreaming","followers_url":"https://api.github.com/users/DailyDreaming/followers","following_url":"https://api.github.com/users/DailyDreaming/following{/other_user}","gists_url":"https://api.github.com/users/DailyDreaming/gists{/gist_id}","starred_url":"https://api.github.com/users/DailyDreaming/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/DailyDreaming/subscriptions","organizations_url":"https://api.github.com/users/DailyDreaming/orgs","repos_url":"https://api.github.com/users/DailyDreaming/repos","events_url":"https://api.github.com/users/DailyDreaming/events{/privacy}","received_events_url":"https://api.github.com/users/DailyDreaming/received_events","type":"User","site_admin":false},"labels":[{"id":194037021,"url":"https://api.github.com/repos/BD2KGenomics/toil/labels/in%20progress","name":"in progress","color":"ededed","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-02-26T22:36:39Z","updated_at":"2018-03-01T02:34:08Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/BD2KGenomics/toil/pulls/2086","html_url":"https://github.com/BD2KGenomics/toil/pull/2086","diff_url":"https://github.com/BD2KGenomics/toil/pull/2086.diff","patch_url":"https://github.com/BD2KGenomics/toil/pull/2086.patch"},"body":"Partially addresses #1936.\r\n\r\nEliminates the `bd2k.util.files` dependency (for py2/3 compatibility).\r\n\r\nShould be a part of #1937, but I'm not sure what's happening with that PR and also a wholesale import of the bd2k lib might be more than we need?  A lot of bd2k seems unnecessary to import."},"comment":{"url":"https://api.github.com/repos/BD2KGenomics/toil/issues/comments/369454578","html_url":"https://github.com/BD2KGenomics/toil/pull/2086#issuecomment-369454578","issue_url":"https://api.github.com/repos/BD2KGenomics/toil/issues/2086","id":369454578,"user":{"login":"DailyDreaming","id":20567496,"avatar_url":"https://avatars3.githubusercontent.com/u/20567496?v=4","gravatar_id":"","url":"https://api.github.com/users/DailyDreaming","html_url":"https://github.com/DailyDreaming","followers_url":"https://api.github.com/users/DailyDreaming/followers","following_url":"https://api.github.com/users/DailyDreaming/following{/other_user}","gists_url":"https://api.github.com/users/DailyDreaming/gists{/gist_id}","starred_url":"https://api.github.com/users/DailyDreaming/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/DailyDreaming/subscriptions","organizations_url":"https://api.github.com/users/DailyDreaming/orgs","repos_url":"https://api.github.com/users/DailyDreaming/repos","events_url":"https://api.github.com/users/DailyDreaming/events{/privacy}","received_events_url":"https://api.github.com/users/DailyDreaming/received_events","type":"User","site_admin":false},"created_at":"2018-03-01T02:34:07Z","updated_at":"2018-03-01T02:34:07Z","author_association":"CONTRIBUTOR","body":"That would be useful for some of the rest of bd2k that has testing that would be good to retain.  I wouldn't mind merging this as is if you approve and doing the rest in chunks when I have time."}}
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