{"action":"created","issue":{"url":"https://api.github.com/repos/incf-nidash/nidm-specs/issues/453","repository_url":"https://api.github.com/repos/incf-nidash/nidm-specs","labels_url":"https://api.github.com/repos/incf-nidash/nidm-specs/issues/453/labels{/name}","comments_url":"https://api.github.com/repos/incf-nidash/nidm-specs/issues/453/comments","events_url":"https://api.github.com/repos/incf-nidash/nidm-specs/issues/453/events","html_url":"https://github.com/incf-nidash/nidm-specs/issues/453","id":296775338,"number":453,"title":"Assignment of NIDM terms to prov categories in owl_reader.py","user":{"login":"khelm","id":4069722,"avatar_url":"https://avatars1.githubusercontent.com/u/4069722?v=4","gravatar_id":"","url":"https://api.github.com/users/khelm","html_url":"https://github.com/khelm","followers_url":"https://api.github.com/users/khelm/followers","following_url":"https://api.github.com/users/khelm/following{/other_user}","gists_url":"https://api.github.com/users/khelm/gists{/gist_id}","starred_url":"https://api.github.com/users/khelm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/khelm/subscriptions","organizations_url":"https://api.github.com/users/khelm/orgs","repos_url":"https://api.github.com/users/khelm/repos","events_url":"https://api.github.com/users/khelm/events{/privacy}","received_events_url":"https://api.github.com/users/khelm/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2018-02-13T15:21:54Z","updated_at":"2018-02-28T15:01:13Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"@cmaumet : If I understand the code correctly, I see that owl_reader.py tries to figure out which of the prov categories (activity, entity, agent) a given term should be associated with. I see the \"recursive=3\" assignment - does that mean that it goes up three graph nodes to see if it hits one of the prov categories?  This is in the module get_class_name_by_prov_type.  \r\n\r\nThis module returns a warning for most, maybe all (I haven't gone through each one to find out) of the nidm namespace terms. All of the nidm namespace terms should return a prov category- could you have your code search through the graph until it hits the prov category? "},"comment":{"url":"https://api.github.com/repos/incf-nidash/nidm-specs/issues/comments/369266391","html_url":"https://github.com/incf-nidash/nidm-specs/issues/453#issuecomment-369266391","issue_url":"https://api.github.com/repos/incf-nidash/nidm-specs/issues/453","id":369266391,"user":{"login":"khelm","id":4069722,"avatar_url":"https://avatars1.githubusercontent.com/u/4069722?v=4","gravatar_id":"","url":"https://api.github.com/users/khelm","html_url":"https://github.com/khelm","followers_url":"https://api.github.com/users/khelm/followers","following_url":"https://api.github.com/users/khelm/following{/other_user}","gists_url":"https://api.github.com/users/khelm/gists{/gist_id}","starred_url":"https://api.github.com/users/khelm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/khelm/subscriptions","organizations_url":"https://api.github.com/users/khelm/orgs","repos_url":"https://api.github.com/users/khelm/repos","events_url":"https://api.github.com/users/khelm/events{/privacy}","received_events_url":"https://api.github.com/users/khelm/received_events","type":"User","site_admin":false},"created_at":"2018-02-28T15:01:13Z","updated_at":"2018-02-28T15:01:13Z","author_association":"CONTRIBUTOR","body":"I get:\r\nSwitched to branch 'master'\r\nYour branch is up-to-date with 'upstream/master'.\r\n\r\n$ git log -2\r\ncommit bee9202d8b35790cc563b53e25be0c61bd0a34b2\r\nMerge: eb8859a 89df9a3\r\nAuthor: Karl Helmer <helmer@nmr.mgh.harvard.edu>\r\nDate:   Wed Feb 21 10:23:27 2018 -0500\r\n\r\n    Merge pull request #452 from khelm/nidm-e-specs\r\n    \r\n    update create_expe_specifications.py with current terms\r\n\r\ncommit 89df9a345e8ab7694dc991821cee9b64d268f8d5\r\nAuthor: Karl Helmer <helmer@nmr.mgh.harvard.edu>\r\nDate:   Thu Feb 15 13:52:11 2018 -0500\r\n\r\n    remove fMRI design type terms from create_expe_specification.py and add add \r\n"}}
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