{"action":"created","issue":{"url":"https://api.github.com/repos/rabix/bunny/issues/431","repository_url":"https://api.github.com/repos/rabix/bunny","labels_url":"https://api.github.com/repos/rabix/bunny/issues/431/labels{/name}","comments_url":"https://api.github.com/repos/rabix/bunny/issues/431/comments","events_url":"https://api.github.com/repos/rabix/bunny/issues/431/events","html_url":"https://github.com/rabix/bunny/issues/431","id":303960101,"number":431,"title":"best way to run rabix/bunny on HPC?","user":{"login":"davidroberson","id":7877261,"avatar_url":"https://avatars0.githubusercontent.com/u/7877261?v=4","gravatar_id":"","url":"https://api.github.com/users/davidroberson","html_url":"https://github.com/davidroberson","followers_url":"https://api.github.com/users/davidroberson/followers","following_url":"https://api.github.com/users/davidroberson/following{/other_user}","gists_url":"https://api.github.com/users/davidroberson/gists{/gist_id}","starred_url":"https://api.github.com/users/davidroberson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davidroberson/subscriptions","organizations_url":"https://api.github.com/users/davidroberson/orgs","repos_url":"https://api.github.com/users/davidroberson/repos","events_url":"https://api.github.com/users/davidroberson/events{/privacy}","received_events_url":"https://api.github.com/users/davidroberson/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":7,"created_at":"2018-03-09T19:50:57Z","updated_at":"2018-03-14T20:15:17Z","closed_at":"2018-03-14T20:15:17Z","author_association":"NONE","body":"\r\nIs there some magic to get rabix to work in an environment hostile to docker?  Should we run bunny inside a singularity container or is it possible to bootstrap the docker images inside many singularity steps?\r\n\r\nThank you."},"comment":{"url":"https://api.github.com/repos/rabix/bunny/issues/comments/373159569","html_url":"https://github.com/rabix/bunny/issues/431#issuecomment-373159569","issue_url":"https://api.github.com/repos/rabix/bunny/issues/431","id":373159569,"user":{"login":"davidroberson","id":7877261,"avatar_url":"https://avatars0.githubusercontent.com/u/7877261?v=4","gravatar_id":"","url":"https://api.github.com/users/davidroberson","html_url":"https://github.com/davidroberson","followers_url":"https://api.github.com/users/davidroberson/followers","following_url":"https://api.github.com/users/davidroberson/following{/other_user}","gists_url":"https://api.github.com/users/davidroberson/gists{/gist_id}","starred_url":"https://api.github.com/users/davidroberson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/davidroberson/subscriptions","organizations_url":"https://api.github.com/users/davidroberson/orgs","repos_url":"https://api.github.com/users/davidroberson/repos","events_url":"https://api.github.com/users/davidroberson/events{/privacy}","received_events_url":"https://api.github.com/users/davidroberson/received_events","type":"User","site_admin":false},"created_at":"2018-03-14T20:15:17Z","updated_at":"2018-03-14T20:15:17Z","author_association":"NONE","body":"closing this issue because using \r\n\r\n```\r\nrabix --no-container\r\n```\r\ninside a singularity container is completely working for me and even is doing all the scatter / gather correctly..etc etc.\r\n\r\nI like this solution better because now the only requirement is singularity.  Java 8, Rabix/bunny, and cwl file are inside the container.  We could still pipe in a new cwl file for a quick correction of a script.\r\n\r\nThank you"}}
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