{"action":"created","issue":{"url":"https://api.github.com/repos/LanguageMachines/ticcltools/issues/18","repository_url":"https://api.github.com/repos/LanguageMachines/ticcltools","labels_url":"https://api.github.com/repos/LanguageMachines/ticcltools/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/LanguageMachines/ticcltools/issues/18/comments","events_url":"https://api.github.com/repos/LanguageMachines/ticcltools/issues/18/events","html_url":"https://github.com/LanguageMachines/ticcltools/issues/18","id":329813228,"node_id":"MDU6SXNzdWUzMjk4MTMyMjg=","number":18,"title":"TICCL-unk runtime error","user":{"login":"pdekker12","id":5880462,"node_id":"MDQ6VXNlcjU4ODA0NjI=","avatar_url":"https://avatars3.githubusercontent.com/u/5880462?v=4","gravatar_id":"","url":"https://api.github.com/users/pdekker12","html_url":"https://github.com/pdekker12","followers_url":"https://api.github.com/users/pdekker12/followers","following_url":"https://api.github.com/users/pdekker12/following{/other_user}","gists_url":"https://api.github.com/users/pdekker12/gists{/gist_id}","starred_url":"https://api.github.com/users/pdekker12/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pdekker12/subscriptions","organizations_url":"https://api.github.com/users/pdekker12/orgs","repos_url":"https://api.github.com/users/pdekker12/repos","events_url":"https://api.github.com/users/pdekker12/events{/privacy}","received_events_url":"https://api.github.com/users/pdekker12/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},"assignees":[{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},{"login":"kosloot","id":5870017,"node_id":"MDQ6VXNlcjU4NzAwMTc=","avatar_url":"https://avatars1.githubusercontent.com/u/5870017?v=4","gravatar_id":"","url":"https://api.github.com/users/kosloot","html_url":"https://github.com/kosloot","followers_url":"https://api.github.com/users/kosloot/followers","following_url":"https://api.github.com/users/kosloot/following{/other_user}","gists_url":"https://api.github.com/users/kosloot/gists{/gist_id}","starred_url":"https://api.github.com/users/kosloot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kosloot/subscriptions","organizations_url":"https://api.github.com/users/kosloot/orgs","repos_url":"https://api.github.com/users/kosloot/repos","events_url":"https://api.github.com/users/kosloot/events{/privacy}","received_events_url":"https://api.github.com/users/kosloot/received_events","type":"User","site_admin":false}],"milestone":null,"comments":29,"created_at":"2018-06-06T10:45:31Z","updated_at":"2018-06-07T11:40:42Z","closed_at":null,"author_association":"NONE","body":"I installed the latest version of LaMachine, which contains the latest version of ticcltools.\r\n\r\nI uploaded a tif file through the CLAM API, to process it through the whole PICCL pipeline. Before, this worked, for the same file. Now, I get the following error:\r\n\r\n```\r\nCaused by:\r\n  Process `ticclunk (1)` terminated with an error exit status (134)\r\n\r\nCommand executed:\r\n\r\n  set +u\r\n  if [ ! -z \"\" ]; then\r\n      source /bin/activate\r\n  fi\r\n  set -u\r\n  \r\n  TICCL-unk --background \"lexicon.lst\" --artifrq 10000000 \"corpus.wordfreqlist.tsv\"\r\n\r\nCommand exit status:\r\n  134\r\n\r\nCommand output:\r\n  (empty)\r\n\r\nCommand error:\r\n  terminate called after throwing an instance of 'std::runtime_error'\r\n    what():  creating UniFilter: default_filter failed\r\n  error in rules, line=-1 at postion: -1\r\n  .command.sh: line 8: 12503 Aborted                 TICCL-unk --background \"lexicon.lst\" --artifrq 10000000 \"corpus.wordfreqlist.tsv\"\r\n\r\nWork dir:\r\n  /vol1/lamachine/piccl.clam/projects/anonymous/test001/work/99/5dcdd7247fcfb28c3f5224380e4b0c\r\n\r\nTip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`\r\n\r\n -- Check '.nextflow.log' file for details\r\n```\r\n\r\n@proycon I added the issue here, but may also be PICCL-related?"},"comment":{"url":"https://api.github.com/repos/LanguageMachines/ticcltools/issues/comments/395390302","html_url":"https://github.com/LanguageMachines/ticcltools/issues/18#issuecomment-395390302","issue_url":"https://api.github.com/repos/LanguageMachines/ticcltools/issues/18","id":395390302,"node_id":"MDEyOklzc3VlQ29tbWVudDM5NTM5MDMwMg==","user":{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},"created_at":"2018-06-07T11:40:42Z","updated_at":"2018-06-07T11:40:42Z","author_association":"MEMBER","body":"Hmm, that means forcing the local from the wrapper script and from the ``lamachine-start-webserver`` script both didn't work, which is a bit puzzling. It's not entirely unexpected that it's not your usual locale because uwsgi does probably spawn a non-interactive shell which might bypass your usual interactive shell configuration. If you can't force the locale system-wide, then perhaps we should try setting the locale in the uwsgi vassal script. What happens if you add the following to your ``piccl.ini`` (in ``etc/uwsgi-emperor`` and rerun ``lamachine-start-webserver``?\r\n\r\n``env = LC_ALL=en_US.UTF-8``\r\n\r\n\r\n"}}
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