{"action":"created","issue":{"url":"https://api.github.com/repos/vpc-ccg/sedef/issues/3","repository_url":"https://api.github.com/repos/vpc-ccg/sedef","labels_url":"https://api.github.com/repos/vpc-ccg/sedef/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/vpc-ccg/sedef/issues/3/comments","events_url":"https://api.github.com/repos/vpc-ccg/sedef/issues/3/events","html_url":"https://github.com/vpc-ccg/sedef/issues/3","id":337167691,"node_id":"MDU6SXNzdWUzMzcxNjc2OTE=","number":3,"title":"Error: operand type mismatch for `vpor'","user":{"login":"baraaorabi","id":6283321,"node_id":"MDQ6VXNlcjYyODMzMjE=","avatar_url":"https://avatars0.githubusercontent.com/u/6283321?v=4","gravatar_id":"","url":"https://api.github.com/users/baraaorabi","html_url":"https://github.com/baraaorabi","followers_url":"https://api.github.com/users/baraaorabi/followers","following_url":"https://api.github.com/users/baraaorabi/following{/other_user}","gists_url":"https://api.github.com/users/baraaorabi/gists{/gist_id}","starred_url":"https://api.github.com/users/baraaorabi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/baraaorabi/subscriptions","organizations_url":"https://api.github.com/users/baraaorabi/orgs","repos_url":"https://api.github.com/users/baraaorabi/repos","events_url":"https://api.github.com/users/baraaorabi/events{/privacy}","received_events_url":"https://api.github.com/users/baraaorabi/received_events","type":"User","site_admin":false},"labels":[{"id":979632870,"node_id":"MDU6TGFiZWw5Nzk2MzI4NzA=","url":"https://api.github.com/repos/vpc-ccg/sedef/labels/error","name":"error","color":"d93f0b","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-06-29T23:57:33Z","updated_at":"2018-07-02T03:40:03Z","closed_at":null,"author_association":"NONE","body":"I am getting an assembler error when I try to compile SEDEF.  I am using GCC version 5.2.0:\r\n```\r\n[borabi@xavier3-eno2 src]$ gcc --version\r\ngcc (GCC) 5.2.0\r\nCopyright (C) 2015 Free Software Foundation, Inc.\r\nThis is free software; see the source for copying conditions.  There is NO\r\nwarranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.\r\n```\r\nHere's my bash output:\r\n```\r\n[borabi@xavier3-eno2 src]$ git clone https://github.com/vpc-ccg/sedef\r\nCloning into 'sedef'...\r\nremote: Counting objects: 1066, done.\r\nremote: Compressing objects: 100% (51/51), done.\r\nremote: Total 1066 (delta 19), reused 30 (delta 13), pack-reused 1002\r\nReceiving objects: 100% (1066/1066), 21.08 MiB | 15.74 MiB/s, done.\r\nResolving deltas: 100% (767/767), done.\r\n[borabi@xavier3-eno2 src]$ cd sedef/\r\n[borabi@xavier3-eno2 sedef]$ make -j release\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/merge.cc -o src/merge.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/hit.cc -o src/hit.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/util.cc -o src/util.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/align.cc -o src/align.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/align_main.cc -o src/align_main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/fasta.cc -o src/fasta.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/globals.cc -o src/globals.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/sliding.cc -o src/sliding.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/main.cc -o src/main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/hash.cc -o src/hash.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/filter.cc -o src/filter.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/chain.cc -o src/chain.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/refine.cc -o src/refine.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/search.cc -o src/search.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/stats_main.cc -o src/stats_main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/search_main.cc -o src/search_main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" extern/ksw2_extz2_sse.cc -o extern/ksw2_extz2_sse.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" extern/format.cc -o extern/format.o\r\n/tmp/ccIdoBrl.s: Assembler messages:\r\n/tmp/ccIdoBrl.s:516: Error: operand type mismatch for `vpor'\r\nmake: *** [extern/ksw2_extz2_sse.o] Error 1\r\nmake: *** Waiting for unfinished jobs....\r\n```\r\n\r\nI also tried with the `g++` flag option:\r\n```\r\n[borabi@xavier3-eno2 sedef]$ make -j release CXX=g++\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/merge.cc -o src/merge.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/hit.cc -o src/hit.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/util.cc -o src/util.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/align.cc -o src/align.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/align_main.cc -o src/align_main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/fasta.cc -o src/fasta.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/globals.cc -o src/globals.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/sliding.cc -o src/sliding.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/main.cc -o src/main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/hash.cc -o src/hash.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/filter.cc -o src/filter.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/chain.cc -o src/chain.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/refine.cc -o src/refine.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/search.cc -o src/search.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/stats_main.cc -o src/stats_main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" src/search_main.cc -o src/search_main.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" extern/ksw2_extz2_sse.cc -o extern/ksw2_extz2_sse.o\r\ng++ -c -I fmt -I . -std=c++14 -I src -fopenmp -fdiagnostics-color -march=native -MMD -MP -I. -O2 -g -O3 -DNDEBUG  -DGITVER=\\\"1.1-8-g9f8d942\\\" extern/format.cc -o extern/format.o\r\n/tmp/ccuHyaaP.s: Assembler messages:\r\n/tmp/ccuHyaaP.s:516: Error: operand type mismatch for `vpor'\r\nmake: *** [extern/ksw2_extz2_sse.o] Error 1\r\nmake: *** Waiting for unfinished jobs....\r\n```\r\nStill getting the same error.\r\n\r\nP.S.: When I use GCC version 5.5.0 (installed from Homebrew), SEDEF installs smoothly. Is there a specific version of GCC below which SEDEF won't compile?\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/vpc-ccg/sedef/issues/comments/401663662","html_url":"https://github.com/vpc-ccg/sedef/issues/3#issuecomment-401663662","issue_url":"https://api.github.com/repos/vpc-ccg/sedef/issues/3","id":401663662,"node_id":"MDEyOklzc3VlQ29tbWVudDQwMTY2MzY2Mg==","user":{"login":"inumanag","id":10132487,"node_id":"MDQ6VXNlcjEwMTMyNDg3","avatar_url":"https://avatars3.githubusercontent.com/u/10132487?v=4","gravatar_id":"","url":"https://api.github.com/users/inumanag","html_url":"https://github.com/inumanag","followers_url":"https://api.github.com/users/inumanag/followers","following_url":"https://api.github.com/users/inumanag/following{/other_user}","gists_url":"https://api.github.com/users/inumanag/gists{/gist_id}","starred_url":"https://api.github.com/users/inumanag/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/inumanag/subscriptions","organizations_url":"https://api.github.com/users/inumanag/orgs","repos_url":"https://api.github.com/users/inumanag/repos","events_url":"https://api.github.com/users/inumanag/events{/privacy}","received_events_url":"https://api.github.com/users/inumanag/received_events","type":"User","site_admin":false},"created_at":"2018-07-02T03:40:03Z","updated_at":"2018-07-02T03:40:03Z","author_association":"COLLABORATOR","body":"The problematic file is using SSE4 instructions, and for some reason that fails to compile on your machine. Can you check in /proc/cpuinfo what SSE intrinsics are supported?"}}
{"actor":{"display_login":"inumanag"}}