{"action":"created","issue":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/2865","repository_url":"https://api.github.com/repos/broadinstitute/gatk","labels_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2865/labels{/name}","comments_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2865/comments","events_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2865/events","html_url":"https://github.com/broadinstitute/gatk/issues/2865","id":233661646,"number":2865,"title":"enable --includeNonVariantSites GenotypeGVCFS option","user":{"login":"droazen","id":798637,"avatar_url":"https://avatars0.githubusercontent.com/u/798637?v=4","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"lbergelson","id":4700332,"avatar_url":"https://avatars3.githubusercontent.com/u/4700332?v=4","gravatar_id":"","url":"https://api.github.com/users/lbergelson","html_url":"https://github.com/lbergelson","followers_url":"https://api.github.com/users/lbergelson/followers","following_url":"https://api.github.com/users/lbergelson/following{/other_user}","gists_url":"https://api.github.com/users/lbergelson/gists{/gist_id}","starred_url":"https://api.github.com/users/lbergelson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbergelson/subscriptions","organizations_url":"https://api.github.com/users/lbergelson/orgs","repos_url":"https://api.github.com/users/lbergelson/repos","events_url":"https://api.github.com/users/lbergelson/events{/privacy}","received_events_url":"https://api.github.com/users/lbergelson/received_events","type":"User","site_admin":false},"assignees":[{"login":"lbergelson","id":4700332,"avatar_url":"https://avatars3.githubusercontent.com/u/4700332?v=4","gravatar_id":"","url":"https://api.github.com/users/lbergelson","html_url":"https://github.com/lbergelson","followers_url":"https://api.github.com/users/lbergelson/followers","following_url":"https://api.github.com/users/lbergelson/following{/other_user}","gists_url":"https://api.github.com/users/lbergelson/gists{/gist_id}","starred_url":"https://api.github.com/users/lbergelson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lbergelson/subscriptions","organizations_url":"https://api.github.com/users/lbergelson/orgs","repos_url":"https://api.github.com/users/lbergelson/repos","events_url":"https://api.github.com/users/lbergelson/events{/privacy}","received_events_url":"https://api.github.com/users/lbergelson/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/broadinstitute/gatk/milestones/20","html_url":"https://github.com/broadinstitute/gatk/milestone/20","labels_url":"https://api.github.com/repos/broadinstitute/gatk/milestones/20/labels","id":2843981,"number":20,"title":"Engine-2Q2018","description":"","creator":{"login":"droazen","id":798637,"avatar_url":"https://avatars0.githubusercontent.com/u/798637?v=4","gravatar_id":"","url":"https://api.github.com/users/droazen","html_url":"https://github.com/droazen","followers_url":"https://api.github.com/users/droazen/followers","following_url":"https://api.github.com/users/droazen/following{/other_user}","gists_url":"https://api.github.com/users/droazen/gists{/gist_id}","starred_url":"https://api.github.com/users/droazen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/droazen/subscriptions","organizations_url":"https://api.github.com/users/droazen/orgs","repos_url":"https://api.github.com/users/droazen/repos","events_url":"https://api.github.com/users/droazen/events{/privacy}","received_events_url":"https://api.github.com/users/droazen/received_events","type":"User","site_admin":false},"open_issues":175,"closed_issues":11,"state":"open","created_at":"2017-10-17T17:04:12Z","updated_at":"2018-05-01T16:43:16Z","due_on":"2018-06-30T07:00:00Z","closed_at":null},"comments":2,"created_at":"2017-06-05T17:51:03Z","updated_at":"2018-05-02T21:26:57Z","closed_at":null,"author_association":"COLLABORATOR","body":"@lbergelson commented on [Tue Jun 21 2016](https://github.com/broadinstitute/gatk-protected/issues/580)\n\nUpdate genotype gvcfs so includeNonVariantSites can be enabled.  This may be easiest by implementing a different walker type to match the old LocusWalker behavoir but could also be done by accumulating sites as it goes.\n\n\n---\n\n@lbergelson commented on [Fri Apr 07 2017](https://github.com/broadinstitute/gatk-protected/issues/580#issuecomment-292661735)\n\nthis is blocked by  broadinstitute/gatk#2429\n\n"},"comment":{"url":"https://api.github.com/repos/broadinstitute/gatk/issues/comments/386126848","html_url":"https://github.com/broadinstitute/gatk/issues/2865#issuecomment-386126848","issue_url":"https://api.github.com/repos/broadinstitute/gatk/issues/2865","id":386126848,"user":{"login":"melisakman","id":7295028,"avatar_url":"https://avatars0.githubusercontent.com/u/7295028?v=4","gravatar_id":"","url":"https://api.github.com/users/melisakman","html_url":"https://github.com/melisakman","followers_url":"https://api.github.com/users/melisakman/followers","following_url":"https://api.github.com/users/melisakman/following{/other_user}","gists_url":"https://api.github.com/users/melisakman/gists{/gist_id}","starred_url":"https://api.github.com/users/melisakman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/melisakman/subscriptions","organizations_url":"https://api.github.com/users/melisakman/orgs","repos_url":"https://api.github.com/users/melisakman/repos","events_url":"https://api.github.com/users/melisakman/events{/privacy}","received_events_url":"https://api.github.com/users/melisakman/received_events","type":"User","site_admin":false},"created_at":"2018-05-02T21:26:56Z","updated_at":"2018-05-02T21:26:56Z","author_association":"NONE","body":"It would be great to have this option. +1 here!\r\n"}}
{"actor":{"display_login":"melisakman"}}