{"action":"created","issue":{"url":"https://api.github.com/repos/AllenInstitute/bmtk/issues/48","repository_url":"https://api.github.com/repos/AllenInstitute/bmtk","labels_url":"https://api.github.com/repos/AllenInstitute/bmtk/issues/48/labels{/name}","comments_url":"https://api.github.com/repos/AllenInstitute/bmtk/issues/48/comments","events_url":"https://api.github.com/repos/AllenInstitute/bmtk/issues/48/events","html_url":"https://github.com/AllenInstitute/bmtk/issues/48","id":381527513,"node_id":"MDU6SXNzdWUzODE1Mjc1MTM=","number":48,"title":"Bmtk requires optional mechanisms_dir parameter","user":{"login":"wvangeit","id":3098670,"node_id":"MDQ6VXNlcjMwOTg2NzA=","avatar_url":"https://avatars2.githubusercontent.com/u/3098670?v=4","gravatar_id":"","url":"https://api.github.com/users/wvangeit","html_url":"https://github.com/wvangeit","followers_url":"https://api.github.com/users/wvangeit/followers","following_url":"https://api.github.com/users/wvangeit/following{/other_user}","gists_url":"https://api.github.com/users/wvangeit/gists{/gist_id}","starred_url":"https://api.github.com/users/wvangeit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wvangeit/subscriptions","organizations_url":"https://api.github.com/users/wvangeit/orgs","repos_url":"https://api.github.com/users/wvangeit/repos","events_url":"https://api.github.com/users/wvangeit/events{/privacy}","received_events_url":"https://api.github.com/users/wvangeit/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-11-16T09:57:50Z","updated_at":"2018-11-16T18:14:30Z","closed_at":"2018-11-16T18:14:30Z","author_association":"CONTRIBUTOR","body":"According to the Sonata specification, the \"mechanisms_dir\" field of the circuit config is optional.\r\nHowever, due to I think this line\r\nhttps://github.com/AllenInstitute/bmtk/blob/develop/bmtk/simulator/bionet/config.py#L68\r\nbmtk fails with an exception when I try to load a config that doesn't have mechanisms specification"},"comment":{"url":"https://api.github.com/repos/AllenInstitute/bmtk/issues/comments/439479812","html_url":"https://github.com/AllenInstitute/bmtk/issues/48#issuecomment-439479812","issue_url":"https://api.github.com/repos/AllenInstitute/bmtk/issues/48","id":439479812,"node_id":"MDEyOklzc3VlQ29tbWVudDQzOTQ3OTgxMg==","user":{"login":"kaeldai","id":9115702,"node_id":"MDQ6VXNlcjkxMTU3MDI=","avatar_url":"https://avatars1.githubusercontent.com/u/9115702?v=4","gravatar_id":"","url":"https://api.github.com/users/kaeldai","html_url":"https://github.com/kaeldai","followers_url":"https://api.github.com/users/kaeldai/followers","following_url":"https://api.github.com/users/kaeldai/following{/other_user}","gists_url":"https://api.github.com/users/kaeldai/gists{/gist_id}","starred_url":"https://api.github.com/users/kaeldai/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kaeldai/subscriptions","organizations_url":"https://api.github.com/users/kaeldai/orgs","repos_url":"https://api.github.com/users/kaeldai/repos","events_url":"https://api.github.com/users/kaeldai/events{/privacy}","received_events_url":"https://api.github.com/users/kaeldai/received_events","type":"User","site_admin":false},"created_at":"2018-11-16T18:14:30Z","updated_at":"2018-11-16T18:14:30Z","author_association":"COLLABORATOR","body":"Thanks @wvangeit - fix has already been merged."}}
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