{"action":"created","issue":{"url":"https://api.github.com/repos/liangyy/deep_variant_annotation/issues/1","repository_url":"https://api.github.com/repos/liangyy/deep_variant_annotation","labels_url":"https://api.github.com/repos/liangyy/deep_variant_annotation/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/liangyy/deep_variant_annotation/issues/1/comments","events_url":"https://api.github.com/repos/liangyy/deep_variant_annotation/issues/1/events","html_url":"https://github.com/liangyy/deep_variant_annotation/issues/1","id":334636715,"node_id":"MDU6SXNzdWUzMzQ2MzY3MTU=","number":1,"title":"Make software installation more transparent (eg via docker)","user":{"login":"gaow","id":917985,"node_id":"MDQ6VXNlcjkxNzk4NQ==","avatar_url":"https://avatars1.githubusercontent.com/u/917985?v=4","gravatar_id":"","url":"https://api.github.com/users/gaow","html_url":"https://github.com/gaow","followers_url":"https://api.github.com/users/gaow/followers","following_url":"https://api.github.com/users/gaow/following{/other_user}","gists_url":"https://api.github.com/users/gaow/gists{/gist_id}","starred_url":"https://api.github.com/users/gaow/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gaow/subscriptions","organizations_url":"https://api.github.com/users/gaow/orgs","repos_url":"https://api.github.com/users/gaow/repos","events_url":"https://api.github.com/users/gaow/events{/privacy}","received_events_url":"https://api.github.com/users/gaow/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-06-21T20:01:36Z","updated_at":"2018-06-22T16:59:59Z","closed_at":null,"author_association":"NONE","body":"Hi @liangyy i took a look of your `setup.sh` on RCC. It seems you've configured a very specific environment that I cannot make it work easily on other machines for people without RCC access. I'm wondering if you are interested in helping me putting together a proper `docker` configuration to make your pipeline a lot more portable? For example eg I've done for the mash paper:\r\n\r\nhttps://github.com/stephenslab/gtexresults/blob/master/workflows/mash.dockerfile\r\n\r\nthat case people do not need to worry about installing other software than docker itself. \r\n\r\nI'm asking because one of our colleagues (you surely know her xD) is going to need to run this on her desktop. Would be good if we can sort this out one way or another. Thanks!"},"comment":{"url":"https://api.github.com/repos/liangyy/deep_variant_annotation/issues/comments/399511304","html_url":"https://github.com/liangyy/deep_variant_annotation/issues/1#issuecomment-399511304","issue_url":"https://api.github.com/repos/liangyy/deep_variant_annotation/issues/1","id":399511304,"node_id":"MDEyOklzc3VlQ29tbWVudDM5OTUxMTMwNA==","user":{"login":"gaow","id":917985,"node_id":"MDQ6VXNlcjkxNzk4NQ==","avatar_url":"https://avatars1.githubusercontent.com/u/917985?v=4","gravatar_id":"","url":"https://api.github.com/users/gaow","html_url":"https://github.com/gaow","followers_url":"https://api.github.com/users/gaow/followers","following_url":"https://api.github.com/users/gaow/following{/other_user}","gists_url":"https://api.github.com/users/gaow/gists{/gist_id}","starred_url":"https://api.github.com/users/gaow/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gaow/subscriptions","organizations_url":"https://api.github.com/users/gaow/orgs","repos_url":"https://api.github.com/users/gaow/repos","events_url":"https://api.github.com/users/gaow/events{/privacy}","received_events_url":"https://api.github.com/users/gaow/received_events","type":"User","site_admin":false},"created_at":"2018-06-22T16:59:59Z","updated_at":"2018-06-22T16:59:59Z","author_association":"NONE","body":"Ah I guess it might be more efficient if you could point me some documents on how exactly you configured the environment: a mardown file, a shell script etc. Do not worry about the English narratives. The commands and URL are most important. Ideally it should be as comprehensive as possible so presumably if I follow the instructions i can configure it on my machine flawlessly but do not push yourself to hard to achieve it. Just a very rough round of how it should work to the best of your knowledge. Then I can take from there. If i run into rough edges i'll reach out. \r\n\r\nBTW i noticed your envionments has also WASP etc. We'd here focus on a pure deepsea environment so it is best to keep it minimal. For WASP I actually have configured a docker image in case you are interested:\r\n\r\nhttps://github.com/gaow/misc/blob/master/docker/wasp.dockerfile\r\n\r\nand it has been used for production. I guess the deepsea image is more like this one. "}}
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