{"action":"created","issue":{"url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/issues/104","repository_url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis","labels_url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/issues/104/labels{/name}","comments_url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/issues/104/comments","events_url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/issues/104/events","html_url":"https://github.com/HumanCellAtlas/secondary-analysis/issues/104","id":345026338,"node_id":"MDU6SXNzdWUzNDUwMjYzMzg=","number":104,"title":"Update queries for new bundle structure and metadata","user":{"login":"kbergin","id":9449764,"node_id":"MDQ6VXNlcjk0NDk3NjQ=","avatar_url":"https://avatars0.githubusercontent.com/u/9449764?v=4","gravatar_id":"","url":"https://api.github.com/users/kbergin","html_url":"https://github.com/kbergin","followers_url":"https://api.github.com/users/kbergin/followers","following_url":"https://api.github.com/users/kbergin/following{/other_user}","gists_url":"https://api.github.com/users/kbergin/gists{/gist_id}","starred_url":"https://api.github.com/users/kbergin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kbergin/subscriptions","organizations_url":"https://api.github.com/users/kbergin/orgs","repos_url":"https://api.github.com/users/kbergin/repos","events_url":"https://api.github.com/users/kbergin/events{/privacy}","received_events_url":"https://api.github.com/users/kbergin/received_events","type":"User","site_admin":false},"labels":[{"id":1006081126,"node_id":"MDU6TGFiZWwxMDA2MDgxMTI2","url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/labels/Q3-2018","name":"Q3-2018","color":"ffffff","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/milestones/2","html_url":"https://github.com/HumanCellAtlas/secondary-analysis/milestone/2","labels_url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/milestones/2/labels","id":3499488,"node_id":"MDk6TWlsZXN0b25lMzQ5OTQ4OA==","number":2,"title":"Sprint 27","description":"Priorities for this sprint are as follows:\r\n1. Prod\r\n2. Falcon\r\n3. Responding to new metadata/bundle structure changes\r\n4. Grouped QC metrics for analysis pipelines\r\n5. Make a plan out of action items for Optimus from meeting with Picard folks","creator":{"login":"NoopDog","id":3239697,"node_id":"MDQ6VXNlcjMyMzk2OTc=","avatar_url":"https://avatars3.githubusercontent.com/u/3239697?v=4","gravatar_id":"","url":"https://api.github.com/users/NoopDog","html_url":"https://github.com/NoopDog","followers_url":"https://api.github.com/users/NoopDog/followers","following_url":"https://api.github.com/users/NoopDog/following{/other_user}","gists_url":"https://api.github.com/users/NoopDog/gists{/gist_id}","starred_url":"https://api.github.com/users/NoopDog/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NoopDog/subscriptions","organizations_url":"https://api.github.com/users/NoopDog/orgs","repos_url":"https://api.github.com/users/NoopDog/repos","events_url":"https://api.github.com/users/NoopDog/events{/privacy}","received_events_url":"https://api.github.com/users/NoopDog/received_events","type":"User","site_admin":false},"open_issues":21,"closed_issues":3,"state":"open","created_at":"2018-07-16T12:30:07Z","updated_at":"2018-08-02T15:25:16Z","due_on":"2018-08-07T07:00:00Z","closed_at":null},"comments":0,"created_at":"2018-07-26T22:23:41Z","updated_at":"2018-08-02T17:24:50Z","closed_at":null,"author_association":"NONE","body":"Ingestion is updating the bundle structure, there are examples in the metadata examples github repo for us to work against and blue will let us know when they have bundles ready for us. Metadata also has some new breaking changes, not sure if there are example bundles for this yet.\n\nAC:\nSS2 query and analysis json are updated\nmintegration and integration test is passing\n\nExample spreadsheet: https://github.com/HumanCellAtlas/metadata-schema/blob/integration/infrastructure_testing_files/dcp_integration_test_metadata_1_SS2_bundle.xlsx from Mallory\n\nAlso from Mallory: There is a new SS2 bundle in the integration DS (`358fa218-9b3e-4b44-8beb-bfa9c4aa7aee`) using the new bundle structure. This bundle is based on ingesting the DCP-wide integration test spreadsheet, which has been updated to the metadata standard in the metadata-schema repo integration branch."},"comment":{"url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/issues/comments/410004716","html_url":"https://github.com/HumanCellAtlas/secondary-analysis/issues/104#issuecomment-410004716","issue_url":"https://api.github.com/repos/HumanCellAtlas/secondary-analysis/issues/104","id":410004716,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMDAwNDcxNg==","user":{"login":"samanehsan","id":6414394,"node_id":"MDQ6VXNlcjY0MTQzOTQ=","avatar_url":"https://avatars2.githubusercontent.com/u/6414394?v=4","gravatar_id":"","url":"https://api.github.com/users/samanehsan","html_url":"https://github.com/samanehsan","followers_url":"https://api.github.com/users/samanehsan/followers","following_url":"https://api.github.com/users/samanehsan/following{/other_user}","gists_url":"https://api.github.com/users/samanehsan/gists{/gist_id}","starred_url":"https://api.github.com/users/samanehsan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/samanehsan/subscriptions","organizations_url":"https://api.github.com/users/samanehsan/orgs","repos_url":"https://api.github.com/users/samanehsan/repos","events_url":"https://api.github.com/users/samanehsan/events{/privacy}","received_events_url":"https://api.github.com/users/samanehsan/received_events","type":"User","site_admin":false},"created_at":"2018-08-02T17:24:50Z","updated_at":"2018-08-02T17:24:50Z","author_association":"CONTRIBUTOR","body":"The SS2 bundle `358fa218-9b3e-4b44-8beb-bfa9c4aa7aee` is no longer in the integration data store. @malloryfreeberg do you know of another bundle we could use that has the newest bundle structure changes? Also did the example spreadsheet move? The link takes me to a 404 page. "}}
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