{"action":"opened","number":3208,"pull_request":{"url":"https://api.github.com/repos/openmicroscopy/bioformats/pulls/3208","id":211162562,"node_id":"MDExOlB1bGxSZXF1ZXN0MjExMTYyNTYy","html_url":"https://github.com/openmicroscopy/bioformats/pull/3208","diff_url":"https://github.com/openmicroscopy/bioformats/pull/3208.diff","patch_url":"https://github.com/openmicroscopy/bioformats/pull/3208.patch","issue_url":"https://api.github.com/repos/openmicroscopy/bioformats/issues/3208","number":3208,"state":"open","locked":false,"title":"Fix configuration series table retrieval for pyramid detection","user":{"login":"melissalinkert","id":109998,"node_id":"MDQ6VXNlcjEwOTk5OA==","avatar_url":"https://avatars0.githubusercontent.com/u/109998?v=4","gravatar_id":"","url":"https://api.github.com/users/melissalinkert","html_url":"https://github.com/melissalinkert","followers_url":"https://api.github.com/users/melissalinkert/followers","following_url":"https://api.github.com/users/melissalinkert/following{/other_user}","gists_url":"https://api.github.com/users/melissalinkert/gists{/gist_id}","starred_url":"https://api.github.com/users/melissalinkert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/melissalinkert/subscriptions","organizations_url":"https://api.github.com/users/melissalinkert/orgs","repos_url":"https://api.github.com/users/melissalinkert/repos","events_url":"https://api.github.com/users/melissalinkert/events{/privacy}","received_events_url":"https://api.github.com/users/melissalinkert/received_events","type":"User","site_admin":false},"body":"See https://github.com/openmicroscopy/data_repo_config/pull/321 and https://trello.com/c/q5mPwXHU/37-review-broken-pyramid-readers\r\n\r\nThe series table names should match the unflattened series/resolution\r\nindexes.  The table data (SizeX, SizeY, physical sizes, ...) corresponds\r\nto the metadata from a reader with flattened resolutions.  This updates\r\nConfiguration to allow the flattened-ness to be specified when setting\r\nthe active series or getting the series count.  By default, flattened is\r\ntrue.  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