{"action":"created","issue":{"url":"https://api.github.com/repos/dgiambra/langevin_dynamics/issues/126","repository_url":"https://api.github.com/repos/dgiambra/langevin_dynamics","labels_url":"https://api.github.com/repos/dgiambra/langevin_dynamics/issues/126/labels{/name}","comments_url":"https://api.github.com/repos/dgiambra/langevin_dynamics/issues/126/comments","events_url":"https://api.github.com/repos/dgiambra/langevin_dynamics/issues/126/events","html_url":"https://github.com/dgiambra/langevin_dynamics/pull/126","id":373390497,"node_id":"MDExOlB1bGxSZXF1ZXN0MjI1MzMwMDU4","number":126,"title":"Update flake8 to 3.6.0","user":{"login":"pyup-bot","id":16239342,"node_id":"MDQ6VXNlcjE2MjM5MzQy","avatar_url":"https://avatars0.githubusercontent.com/u/16239342?v=4","gravatar_id":"","url":"https://api.github.com/users/pyup-bot","html_url":"https://github.com/pyup-bot","followers_url":"https://api.github.com/users/pyup-bot/followers","following_url":"https://api.github.com/users/pyup-bot/following{/other_user}","gists_url":"https://api.github.com/users/pyup-bot/gists{/gist_id}","starred_url":"https://api.github.com/users/pyup-bot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pyup-bot/subscriptions","organizations_url":"https://api.github.com/users/pyup-bot/orgs","repos_url":"https://api.github.com/users/pyup-bot/repos","events_url":"https://api.github.com/users/pyup-bot/events{/privacy}","received_events_url":"https://api.github.com/users/pyup-bot/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-10-24T09:33:06Z","updated_at":"2018-10-24T09:38:03Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/dgiambra/langevin_dynamics/pulls/126","html_url":"https://github.com/dgiambra/langevin_dynamics/pull/126","diff_url":"https://github.com/dgiambra/langevin_dynamics/pull/126.diff","patch_url":"https://github.com/dgiambra/langevin_dynamics/pull/126.patch"},"body":"\nThis PR updates [flake8](https://pypi.org/project/flake8) from **3.0.4** to **3.6.0**.\n\n\n\n<details>\n  <summary>Changelog</summary>\n  \n  \n   ### 3.6.0\n   ```\n   -------------------\n\nYou can view the `3.6.0 milestone`_ on GitLab for more details.\n\nNew Dependency Information\n~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n- pycodestyle has been updated to &gt;= 2.4.0, &lt; 2.5.0 (See also `GitLab381`_,\n  `GitLab415`_, `GitLab!212`_, `GitLab!230`_, `GitLab!231`_)\n\n- Pyflakes has been updated to &gt;= 2.0.0, &lt; 2.1.0 (See also `GitLab422`_,\n  `GitLab!239`_)\n\n- flake8 requires python 2.x &gt;= 2.7 or python 3.x &gt;= 3.4 (See also\n  `GitLab!225`_)\n\nFeatures\n~~~~~~~~\n\n- Add ``paths`` to allow local plugins to exist outside of ``sys.path`` (See\n  also `GitLab379`_, `GitLab!211`_)\n\n- Copy ``setup.cfg`` files to the temporary git hook execution directory (See\n  also `GitLab!215`_)\n\n- Only skip a file if `` flake8: noqa`` is on a line by itself (See also\n  `GitLab453`_, `GitLab!219`_)\n\n- Provide a better user experience for broken plugins (See also `GitLab!221`_)\n\n- Report ``E902`` when a file passed on the command line does not exist (See\n  also `GitLab405`_, `GitLab!227`_)\n\n- Add ``--extend-ignore`` for extending the default ``ignore`` instead of\n  overriding it (See also `GitLab!233`_)\n\nBugs Fixed\n~~~~~~~~~~\n\n- Respect a formatter&#39;s newline setting when printing (See also `GitLab!222`_)\n\n- Fix leaking of processes in the legacy api (See also `GitLab410`_,\n  `GitLab!228`_)\n\n- Fix a ``SyntaxWarning`` for an invalid escape sequence (See also\n  `GitLab!244`_)\n\n- Fix ``DeprecationWarning`` due to import of ``abc`` classes from the\n  ``collections`` module (See also `GitLab!249`_)\n\n- Defer ``setuptools`` import to improve flake8 startup time (See also\n  `GitLab365`_, `GitLab!250`_)\n\n- Fix inconsistent line endings in ``FileProcessor.lines`` when running under\n  python 3.x (See also `GitLab457`_, `GitLab!255`_)\n\n\n.. all links\n.. _3.6.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/21\n\n.. issue links\n.. _GitLab365:\n    https://gitlab.com/pycqa/flake8/issues/365\n.. _GitLab379:\n    https://gitlab.com/pycqa/flake8/issues/379\n.. _GitLab381:\n    https://gitlab.com/pycqa/flake8/issues/381\n.. _GitLab405:\n    https://gitlab.com/pycqa/flake8/issues/405\n.. _GitLab410:\n    https://gitlab.com/pycqa/flake8/issues/410\n.. _GitLab415:\n    https://gitlab.com/pycqa/flake8/issues/415\n.. _GitLab422:\n    https://gitlab.com/pycqa/flake8/issues/422\n.. _GitLab453:\n    https://gitlab.com/pycqa/flake8/issues/453\n.. _GitLab457:\n    https://gitlab.com/pycqa/flake8/issues/457\n\n.. merge request links\n.. _GitLab!211:\n    https://gitlab.com/pycqa/flake8/merge_requests/211\n.. _GitLab!212:\n    https://gitlab.com/pycqa/flake8/merge_requests/212\n.. _GitLab!215:\n    https://gitlab.com/pycqa/flake8/merge_requests/215\n.. _GitLab!219:\n    https://gitlab.com/pycqa/flake8/merge_requests/219\n.. _GitLab!221:\n    https://gitlab.com/pycqa/flake8/merge_requests/221\n.. _GitLab!222:\n    https://gitlab.com/pycqa/flake8/merge_requests/222\n.. _GitLab!225:\n    https://gitlab.com/pycqa/flake8/merge_requests/225\n.. _GitLab!227:\n    https://gitlab.com/pycqa/flake8/merge_requests/227\n.. _GitLab!228:\n    https://gitlab.com/pycqa/flake8/merge_requests/228\n.. _GitLab!230:\n    https://gitlab.com/pycqa/flake8/merge_requests/230\n.. _GitLab!231:\n    https://gitlab.com/pycqa/flake8/merge_requests/231\n.. _GitLab!233:\n    https://gitlab.com/pycqa/flake8/merge_requests/233\n.. _GitLab!239:\n    https://gitlab.com/pycqa/flake8/merge_requests/239\n.. _GitLab!244:\n    https://gitlab.com/pycqa/flake8/merge_requests/244\n.. _GitLab!249:\n    https://gitlab.com/pycqa/flake8/merge_requests/249\n.. _GitLab!250:\n    https://gitlab.com/pycqa/flake8/merge_requests/250\n.. _GitLab!255:\n    https://gitlab.com/pycqa/flake8/merge_requests/255\n   ```\n   \n  \n  \n   ### 3.5.0\n   ```\n   -------------------\n\nYou can view the `3.5.0 milestone`_ on GitLab for more details.\n\nNew Dependency Information\n~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n- Allow for PyFlakes 1.6.0 (See also `GitLab359`_)\n\n- Start using new PyCodestyle checks for bare excepts and ambiguous identifier\n  (See also `GitLab361`_)\n\nFeatures\n~~~~~~~~\n\n- Print out information about configuring VCS hooks (See also `GitLab335`_)\n\n- Allow users to develop plugins &quot;local&quot; to a repository without using\n  setuptools. See our documentation on local plugins for more information.\n  (See also `GitLab357`_)\n\nBugs Fixed\n~~~~~~~~~~\n\n- Catch and helpfully report ``UnicodeDecodeError``\\ s when parsing\n  configuration files. (See also `GitLab358`_)\n\n\n.. all links\n.. _3.5.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/20\n\n.. issue links\n.. _GitLab335:\n    https://gitlab.com/pycqa/flake8/issues/335\n.. _GitLab357:\n    https://gitlab.com/pycqa/flake8/issues/357\n.. _GitLab358:\n    https://gitlab.com/pycqa/flake8/issues/358\n.. _GitLab359:\n    https://gitlab.com/pycqa/flake8/issues/359\n.. _GitLab361:\n    https://gitlab.com/pycqa/flake8/issues/361\n\n.. merge request links\n   ```\n   \n  \n  \n   ### 3.4.1\n   ```\n   -------------------\n\nYou can view the `3.4.1 milestone`_ on GitLab for more details.\n\n- Fix minor regression when users specify only a ``--select`` list with items\n  in the enabled/extended select list.  (See also `GitLab354`_)\n\n.. all links\n.. _3.4.1 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/19\n\n.. issue links\n.. _GitLab354:\n    https://gitlab.com/pycqa/flake8/issues/354\n\n.. merge request links\n   ```\n   \n  \n  \n   ### 3.4.0\n   ```\n   -------------------\n\nYou can view the `3.4.0 milestone`_ on GitLab for more details.\n\n- Refine logic around ``--select`` and ``--ignore`` when combined with the\n  default values for each. (See also `GitLab318`_)\n\n- Handle spaces as an alternate separate for error codes, e.g.,\n  ``--ignore &#39;E123 E234&#39;``. (See also `GitLab329`_)\n\n- Filter out empty select and ignore codes, e.g., ``--ignore E123,,E234``.\n  (See also `GitLab330`_)\n\n- Specify dependencies appropriately in ``setup.py`` (See also `Gitlab341_`)\n\n- Fix bug in parsing ``--quiet`` and ``--verbose`` from config files.\n  (See also `GitLab!193`_)\n\n- Remove unused import of ``os`` in the git hook template (See also\n  `GitLab!194`_)\n\n.. all links\n.. _3.4.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/18\n\n.. issue links\n.. _GitLab318:\n    https://gitlab.com/pycqa/flake8/issues/318\n.. _GitLab329:\n    https://gitlab.com/pycqa/flake8/issues/329\n.. _GitLab330:\n    https://gitlab.com/pycqa/flake8/issues/330\n.. _GitLab341:\n    https://gitlab.com/pycqa/flake8/issues/341\n\n.. merge request links\n.. _GitLab!193:\n    https://gitlab.com/pycqa/flake8/merge_requests/193\n.. _GitLab!194:\n    https://gitlab.com/pycqa/flake8/merge_requests/194\n   ```\n   \n  \n  \n   ### 3.3.0\n   ```\n   -------------------\n\nYou can view the `3.3.0 milestone`_ on GitLab for more details.\n\n- Add support for Python 3.6 (via dependencies). **Note** Flake8 does not\n  guarantee that all plugins will support Python 3.6.\n\n- Added unique error codes for all missing PyFlakes messages. (14 new\n  codes, see &quot;Error / Violation Codes&quot;)\n\n- Dramatically improve the performance of Flake8. (See also `GitLab!156`_)\n\n- Display the local file path instead of the temporary file path when\n  using the git hook. (See also `GitLab244`_)\n\n- Add methods to Report class that will be called when Flake8 starts and\n  finishes processing a file. (See also `GitLab251`_)\n\n- Fix problem where hooks should only check \\*.py files. (See also\n  `GitLab268`_)\n\n- Fix handling of SyntaxErrors that do not include physical line information.\n  (See also `GitLab279`_)\n\n- Update upper bound on PyFlakes to allow for PyFlakes 1.5.0.  (See also\n  `GitLab290`_)\n\n- Update setuptools integration to less eagerly deduplicate packages.\n  (See also `GitLab295`_)\n\n- Force ``flake8 --version`` to be repeatable between invocations. (See also\n  `GitLab297`_)\n\n.. all links\n.. _3.3.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/16\n\n.. issue links\n.. _GitLab244:\n    https://gitlab.com/pycqa/flake8/issues/244\n.. _GitLab251:\n    https://gitlab.com/pycqa/flake8/issues/251\n.. _GitLab268:\n    https://gitlab.com/pycqa/flake8/issues/268\n.. _GitLab279:\n    https://gitlab.com/pycqa/flake8/issues/279\n.. _GitLab290:\n    https://gitlab.com/pycqa/flake8/issues/290\n.. _GitLab295:\n    https://gitlab.com/pycqa/flake8/issues/295\n.. _GitLab297:\n    https://gitlab.com/pycqa/flake8/issues/297\n\n.. merge request links\n.. _GitLab!156:\n    https://gitlab.com/pycqa/flake8/merge_requests/156\n   ```\n   \n  \n  \n   ### 3.2.1\n   ```\n   -------------------\n\nYou can view the `3.2.1 milestone`_ on GitLab for more details.\n\n- Fix subtle bug when deciding whether to report an on-by-default&#39;s violation\n  (See also `GitLab257`_)\n\n- Fix another bug around SyntaxErrors not being reported at the right column\n  and row (See also `GitLab259`_ and `GitLab237`_ for a related, previously\n  fixed bug)\n\n- Fix regression from 2.x where we run checks against explicitly provided\n  files, even if they don&#39;t match the filename patterns. (See also\n  `GitLab266`_)\n\n.. links\n.. _3.2.1 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/15\n.. _GitLab237:\n    https://gitlab.com/pycqa/flake8/issues/237\n.. _GitLab257:\n    https://gitlab.com/pycqa/flake8/issues/257\n.. _GitLab259:\n    https://gitlab.com/pycqa/flake8/issues/259\n.. _GitLab266:\n    https://gitlab.com/pycqa/flake8/issues/266\n   ```\n   \n  \n  \n   ### 3.2.0\n   ```\n   -------------------\n\nYou can view the `3.2.0 milestone`_ on GitLab for more details.\n\n- Allow for pycodestyle 2.2.0 which fixes a bug in E305 (See also\n  `GitLab256`_)\n\n.. links\n.. _3.2.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/14\n.. _GitLab256:\n    https://gitlab.com/pycqa/flake8/issues/256\n   ```\n   \n  \n  \n   ### 3.1.1\n   ```\n   -------------------\n\nYou can view the `3.1.1 milestone`_ on GitLab for more details.\n\n- Do not attempt to install/distribute a ``man`` file with the Python package;\n  leave this for others to do. (See also `GitLab254`_)\n\n- Fix packaging bug where wheel version constraints specified in setup.cfg did\n  not match the constraints in setup.py. (See also `GitLab255`_)\n\n.. links\n.. _3.1.1 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/13\n.. _GitLab254:\n    https://gitlab.com/pycqa/flake8/issues/254\n.. _GitLab255:\n    https://gitlab.com/pycqa/flake8/issues/255\n   ```\n   \n  \n  \n   ### 3.1.0\n   ```\n   -------------------\n\nYou can view the `3.1.0 milestone`_ on GitLab for more details.\n\n- Add ``--bug-report`` flag to make issue reporters&#39; lives easier.\n\n- Collect configuration files from the current directory when using our Git\n  hook. (See also `GitLab210`_, `GitLab218`_, `GitLab223`_)\n\n- Avoid unhandled exceptions when dealing with SyntaxErrors. (See also\n  `GitLab214`_, `GitLab238`_)\n\n- Exit early if the value for ``--diff`` is empty. (See also `GitLab226`_)\n\n- Handle empty ``--stdin-display-name`` values. (See also `GitLab235`_)\n\n- Properly report the column number of Syntax Errors. We were assuming that\n  all reports of column numbers were 0-indexed, however, SyntaxErrors report\n  the column number as 1-indexed. This caused us to report a column number\n  that was 1 past the actual position. Further, when combined with\n  SyntaxErrors that occur at a newline, this caused the position to be\n  visually off by two. (See also `GitLab237`_)\n\n- Fix the behaviour of ``--enable-extensions``. Previously, items specified\n  here were still ignored due to the fact that the off-by-default extension\n  codes were being left in the ``ignore`` list. (See also `GitLab239`_)\n\n- Fix problems around ``--select`` and ``--ignore`` behaviour that prevented\n  codes that were neither explicitly selected nor explicitly ignored from\n  being reported. (See also `GitLab242`_)\n\n- Truly be quiet when the user specifies ``-q`` one or more times. Previously,\n  we were showing the if the user specified ``-q`` and ``--show-source``. We\n  have fixed this bug. (See also `GitLab245`_)\n\n- Add new File Processor attribute, ``previous_unindented_logical_line`` to\n  accommodate pycodestyle 2.1.0. (See also `GitLab246`_)\n\n- When something goes wrong, exit non-zero. (See also `GitLab248`_,\n  `GitLab209`_)\n\n- Add ``--tee`` as an option to allow use of ``--output-file`` and printing to\n  standard out.\n\n- Allow the git plugin to actually be lazy when collecting files.\n\n- Allow for pycodestyle 2.1 series and pyflakes 1.3 series.\n\n.. links\n.. _3.1.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/12\n.. _GitLab209:\n    https://gitlab.com/pycqa/flake8/issues/209\n.. _GitLab210:\n    https://gitlab.com/pycqa/flake8/issues/210\n.. _GitLab214:\n    https://gitlab.com/pycqa/flake8/issues/214\n.. _GitLab218:\n    https://gitlab.com/pycqa/flake8/issues/218\n.. _GitLab223:\n    https://gitlab.com/pycqa/flake8/issues/223\n.. _GitLab226:\n    https://gitlab.com/pycqa/flake8/issues/226\n.. _GitLab235:\n    https://gitlab.com/pycqa/flake8/issues/235\n.. _GitLab237:\n    https://gitlab.com/pycqa/flake8/issues/237\n.. _GitLab238:\n    https://gitlab.com/pycqa/flake8/issues/238\n.. _GitLab239:\n    https://gitlab.com/pycqa/flake8/issues/239\n.. _GitLab242:\n    https://gitlab.com/pycqa/flake8/issues/242\n.. _GitLab245:\n    https://gitlab.com/pycqa/flake8/issues/245\n.. _GitLab246:\n    https://gitlab.com/pycqa/flake8/issues/246\n.. _GitLab248:\n    https://gitlab.com/pycqa/flake8/issues/248\n   ```\n   \n  \n</details>\n\n\n \n\n<details>\n  <summary>Links</summary>\n  \n  - PyPI: https://pypi.org/project/flake8\n  - Changelog: https://pyup.io/changelogs/flake8/\n  - Repo: https://gitlab.com/pycqa/flake8\n</details>\n\n"},"comment":{"url":"https://api.github.com/repos/dgiambra/langevin_dynamics/issues/comments/432587010","html_url":"https://github.com/dgiambra/langevin_dynamics/pull/126#issuecomment-432587010","issue_url":"https://api.github.com/repos/dgiambra/langevin_dynamics/issues/126","id":432587010,"node_id":"MDEyOklzc3VlQ29tbWVudDQzMjU4NzAxMA==","user":{"login":"coveralls","id":2354108,"node_id":"MDQ6VXNlcjIzNTQxMDg=","avatar_url":"https://avatars1.githubusercontent.com/u/2354108?v=4","gravatar_id":"","url":"https://api.github.com/users/coveralls","html_url":"https://github.com/coveralls","followers_url":"https://api.github.com/users/coveralls/followers","following_url":"https://api.github.com/users/coveralls/following{/other_user}","gists_url":"https://api.github.com/users/coveralls/gists{/gist_id}","starred_url":"https://api.github.com/users/coveralls/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/coveralls/subscriptions","organizations_url":"https://api.github.com/users/coveralls/orgs","repos_url":"https://api.github.com/users/coveralls/repos","events_url":"https://api.github.com/users/coveralls/events{/privacy}","received_events_url":"https://api.github.com/users/coveralls/received_events","type":"User","site_admin":false},"created_at":"2018-10-24T09:38:03Z","updated_at":"2018-10-24T09:38:03Z","author_association":"NONE","body":"\n[![Coverage Status](https://coveralls.io/builds/19690307/badge)](https://coveralls.io/builds/19690307)\n\nCoverage remained the same at 100.0% when pulling **b9b0a5f55f54944ca4f6fe3cac7edf1073a9d44c on pyup-update-flake8-3.0.4-to-3.6.0** into **40fd7024e09beccd6325eaf44bab58a430f06099 on master**.\n"}}
{"actor":{"display_login":"coveralls"}}