{"action":"created","issue":{"url":"https://api.github.com/repos/pombase/website/issues/729","repository_url":"https://api.github.com/repos/pombase/website","labels_url":"https://api.github.com/repos/pombase/website/issues/729/labels{/name}","comments_url":"https://api.github.com/repos/pombase/website/issues/729/comments","events_url":"https://api.github.com/repos/pombase/website/issues/729/events","html_url":"https://github.com/pombase/website/issues/729","id":312811823,"node_id":"MDU6SXNzdWUzMTI4MTE4MjM=","number":729,"title":"Variation track data","user":{"login":"Antonialock","id":12727506,"node_id":"MDQ6VXNlcjEyNzI3NTA2","avatar_url":"https://avatars3.githubusercontent.com/u/12727506?v=4","gravatar_id":"","url":"https://api.github.com/users/Antonialock","html_url":"https://github.com/Antonialock","followers_url":"https://api.github.com/users/Antonialock/followers","following_url":"https://api.github.com/users/Antonialock/following{/other_user}","gists_url":"https://api.github.com/users/Antonialock/gists{/gist_id}","starred_url":"https://api.github.com/users/Antonialock/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Antonialock/subscriptions","organizations_url":"https://api.github.com/users/Antonialock/orgs","repos_url":"https://api.github.com/users/Antonialock/repos","events_url":"https://api.github.com/users/Antonialock/events{/privacy}","received_events_url":"https://api.github.com/users/Antonialock/received_events","type":"User","site_admin":false},"labels":[{"id":418906034,"node_id":"MDU6TGFiZWw0MTg5MDYwMzQ=","url":"https://api.github.com/repos/pombase/website/labels/genome%20browser","name":"genome browser","color":"fef2c0","default":false},{"id":711207228,"node_id":"MDU6TGFiZWw3MTEyMDcyMjg=","url":"https://api.github.com/repos/pombase/website/labels/high%20priority","name":"high priority","color":"d93f0b","default":false},{"id":483742707,"node_id":"MDU6TGFiZWw0ODM3NDI3MDc=","url":"https://api.github.com/repos/pombase/website/labels/next","name":"next","color":"ff3f44","default":false}],"state":"open","locked":false,"assignee":{"login":"kimrutherford","id":90474,"node_id":"MDQ6VXNlcjkwNDc0","avatar_url":"https://avatars2.githubusercontent.com/u/90474?v=4","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"assignees":[{"login":"kimrutherford","id":90474,"node_id":"MDQ6VXNlcjkwNDc0","avatar_url":"https://avatars2.githubusercontent.com/u/90474?v=4","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false}],"milestone":null,"comments":23,"created_at":"2018-04-10T07:58:39Z","updated_at":"2018-06-21T11:46:43Z","closed_at":null,"author_association":"MEMBER","body":"is in ensembl so we should prioritise getting this into the browser\r\n\r\nTransferred from old ticket: #720 \r\n\r\nKim asked where the data is located. \r\n\r\nI replied:\r\n\r\n> You_ are right the variation data is a VCF file. I have no idea where it lives. This ticket suggests that the variation data was uploaded to the EBI? https://helpdesk.ebi.ac.uk/Ticket/Display.html?id=132563\r\n> I can't find the file though\r\n> some detail _here:https://helpdesk.ebi.ac.uk/Ticket/Display.html?id=130286\r\n> \r\n> Also found a comment on track labelling for this: Change track labelling from\r\n> Jeffares_Indels and Jeffares_SNPs\r\n> To\r\n> Variation- NGS -Indel -Jeffares (2015)\r\n> Variation- NGS -SNP -Jeffares _(2015)_\r\n\r\nMidori then looked for the data and found it:\r\n\r\n> I think I may have found the data, deep in the bowels of the ftp-private.ebi.ac.uk site (path upload/pombase/jeffares-diversity-data). I'll email files to @kimrutherford off-ticket to check.\r\n"},"comment":{"url":"https://api.github.com/repos/pombase/website/issues/comments/399075686","html_url":"https://github.com/pombase/website/issues/729#issuecomment-399075686","issue_url":"https://api.github.com/repos/pombase/website/issues/729","id":399075686,"node_id":"MDEyOklzc3VlQ29tbWVudDM5OTA3NTY4Ng==","user":{"login":"djeffares","id":16020425,"node_id":"MDQ6VXNlcjE2MDIwNDI1","avatar_url":"https://avatars2.githubusercontent.com/u/16020425?v=4","gravatar_id":"","url":"https://api.github.com/users/djeffares","html_url":"https://github.com/djeffares","followers_url":"https://api.github.com/users/djeffares/followers","following_url":"https://api.github.com/users/djeffares/following{/other_user}","gists_url":"https://api.github.com/users/djeffares/gists{/gist_id}","starred_url":"https://api.github.com/users/djeffares/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/djeffares/subscriptions","organizations_url":"https://api.github.com/users/djeffares/orgs","repos_url":"https://api.github.com/users/djeffares/repos","events_url":"https://api.github.com/users/djeffares/events{/privacy}","received_events_url":"https://api.github.com/users/djeffares/received_events","type":"User","site_admin":false},"created_at":"2018-06-21T11:46:43Z","updated_at":"2018-06-21T11:46:43Z","author_association":"NONE","body":"Looks great - thanks Kim!\n\ncheers,\nDan\n\n\n\n\n\n\n\n\nOn 21 Jun 2018, at 12:42, Kim Rutherford <notifications@github.com> wrote:\n\nThe two new tracks are live:\nhttps://www.pombase.org/jbrowse/?loc=II%3A2007265..2008224&tracks=PomBase%20forward%20strand%20features%2CDNA%20sequence%2CPomBase%20reverse%20strand%20features%2CIndels%20in%20161%20S.%20pombe%20natural%20isolates%2CSNPs%20in%20161%20S.%20pombe%20natural%20isolates&highlight= <https://www.pombase.org/jbrowse/?loc=II%3A2007265..2008224&tracks=PomBase%20forward%20strand%20features%2CDNA%20sequence%2CPomBase%20reverse%20strand%20features%2CIndels%20in%20161%20S.%20pombe%20natural%20isolates%2CSNPs%20in%20161%20S.%20pombe%20natural%20isolates&highlight=>\nSorry for the delay Dan. Please let us know if you spot any problems.\n\n—\nYou are receiving this because you were mentioned.\nReply to this email directly, view it on GitHub <https://github.com/pombase/website/issues/729#issuecomment-399074674>, or mute the thread <https://github.com/notifications/unsubscribe-auth/APRzyU4qyeP62FOk2JfPCHT9C9QOFuahks5t-4ajgaJpZM4TNxeq>.\n\n\n"}}
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