{"action":"closed","issue":{"url":"https://api.github.com/repos/CCDM-Programming-Club/codonfriend/issues/9","repository_url":"https://api.github.com/repos/CCDM-Programming-Club/codonfriend","labels_url":"https://api.github.com/repos/CCDM-Programming-Club/codonfriend/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/CCDM-Programming-Club/codonfriend/issues/9/comments","events_url":"https://api.github.com/repos/CCDM-Programming-Club/codonfriend/issues/9/events","html_url":"https://github.com/CCDM-Programming-Club/codonfriend/issues/9","id":378116462,"node_id":"MDU6SXNzdWUzNzgxMTY0NjI=","number":9,"title":"GFF3 parser","user":{"login":"darcyabjones","id":5828714,"node_id":"MDQ6VXNlcjU4Mjg3MTQ=","avatar_url":"https://avatars1.githubusercontent.com/u/5828714?v=4","gravatar_id":"","url":"https://api.github.com/users/darcyabjones","html_url":"https://github.com/darcyabjones","followers_url":"https://api.github.com/users/darcyabjones/followers","following_url":"https://api.github.com/users/darcyabjones/following{/other_user}","gists_url":"https://api.github.com/users/darcyabjones/gists{/gist_id}","starred_url":"https://api.github.com/users/darcyabjones/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/darcyabjones/subscriptions","organizations_url":"https://api.github.com/users/darcyabjones/orgs","repos_url":"https://api.github.com/users/darcyabjones/repos","events_url":"https://api.github.com/users/darcyabjones/events{/privacy}","received_events_url":"https://api.github.com/users/darcyabjones/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"paulamool","id":2653719,"node_id":"MDQ6VXNlcjI2NTM3MTk=","avatar_url":"https://avatars3.githubusercontent.com/u/2653719?v=4","gravatar_id":"","url":"https://api.github.com/users/paulamool","html_url":"https://github.com/paulamool","followers_url":"https://api.github.com/users/paulamool/followers","following_url":"https://api.github.com/users/paulamool/following{/other_user}","gists_url":"https://api.github.com/users/paulamool/gists{/gist_id}","starred_url":"https://api.github.com/users/paulamool/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/paulamool/subscriptions","organizations_url":"https://api.github.com/users/paulamool/orgs","repos_url":"https://api.github.com/users/paulamool/repos","events_url":"https://api.github.com/users/paulamool/events{/privacy}","received_events_url":"https://api.github.com/users/paulamool/received_events","type":"User","site_admin":false},"assignees":[{"login":"paulamool","id":2653719,"node_id":"MDQ6VXNlcjI2NTM3MTk=","avatar_url":"https://avatars3.githubusercontent.com/u/2653719?v=4","gravatar_id":"","url":"https://api.github.com/users/paulamool","html_url":"https://github.com/paulamool","followers_url":"https://api.github.com/users/paulamool/followers","following_url":"https://api.github.com/users/paulamool/following{/other_user}","gists_url":"https://api.github.com/users/paulamool/gists{/gist_id}","starred_url":"https://api.github.com/users/paulamool/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/paulamool/subscriptions","organizations_url":"https://api.github.com/users/paulamool/orgs","repos_url":"https://api.github.com/users/paulamool/repos","events_url":"https://api.github.com/users/paulamool/events{/privacy}","received_events_url":"https://api.github.com/users/paulamool/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2018-11-07T02:29:07Z","updated_at":"2018-11-12T03:54:56Z","closed_at":"2018-11-12T03:54:56Z","author_association":"CONTRIBUTOR","body":"We need to parse GFF3 files to be able to output summary tables for CAI vs genomic location.\r\n See #8 \r\n\r\n\r\nAs far as I can see, the [rtracklayer](https://bioconductor.org/packages/release/bioc/vignettes/rtracklayer/inst/doc/rtracklayer.pdf) is the most commonly used parser for R.\r\nWe could use this, or we can parse the gff3 ourselves into a [GenomicRanges](https://bioconductor.org/packages/release/bioc/html/GenomicRanges.html) object.\r\n\r\nSo we have the option of using an existing library for a fairly simple task, or rolling our own."}}
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