{"action":"created","issue":{"url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/issues/56","repository_url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd","labels_url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/issues/56/labels{/name}","comments_url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/issues/56/comments","events_url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/issues/56/events","html_url":"https://github.com/radical-collaboration/extasy-grlsd/issues/56","id":347197586,"node_id":"MDU6SXNzdWUzNDcxOTc1ODY=","number":56,"title":"ana_task tasks behaves different rp and stand-alone","user":{"login":"euhruska","id":9983894,"node_id":"MDQ6VXNlcjk5ODM4OTQ=","avatar_url":"https://avatars0.githubusercontent.com/u/9983894?v=4","gravatar_id":"","url":"https://api.github.com/users/euhruska","html_url":"https://github.com/euhruska","followers_url":"https://api.github.com/users/euhruska/followers","following_url":"https://api.github.com/users/euhruska/following{/other_user}","gists_url":"https://api.github.com/users/euhruska/gists{/gist_id}","starred_url":"https://api.github.com/users/euhruska/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/euhruska/subscriptions","organizations_url":"https://api.github.com/users/euhruska/orgs","repos_url":"https://api.github.com/users/euhruska/repos","events_url":"https://api.github.com/users/euhruska/events{/privacy}","received_events_url":"https://api.github.com/users/euhruska/received_events","type":"User","site_admin":false},"labels":[{"id":821791923,"node_id":"MDU6TGFiZWw4MjE3OTE5MjM=","url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/labels/eugen","name":"eugen","color":"370be8","default":false},{"id":796974346,"node_id":"MDU6TGFiZWw3OTY5NzQzNDY=","url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/labels/important","name":"important","color":"dd4b5e","default":false}],"state":"open","locked":false,"assignee":{"login":"andre-merzky","id":1319674,"node_id":"MDQ6VXNlcjEzMTk2NzQ=","avatar_url":"https://avatars2.githubusercontent.com/u/1319674?v=4","gravatar_id":"","url":"https://api.github.com/users/andre-merzky","html_url":"https://github.com/andre-merzky","followers_url":"https://api.github.com/users/andre-merzky/followers","following_url":"https://api.github.com/users/andre-merzky/following{/other_user}","gists_url":"https://api.github.com/users/andre-merzky/gists{/gist_id}","starred_url":"https://api.github.com/users/andre-merzky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andre-merzky/subscriptions","organizations_url":"https://api.github.com/users/andre-merzky/orgs","repos_url":"https://api.github.com/users/andre-merzky/repos","events_url":"https://api.github.com/users/andre-merzky/events{/privacy}","received_events_url":"https://api.github.com/users/andre-merzky/received_events","type":"User","site_admin":false},"assignees":[{"login":"andre-merzky","id":1319674,"node_id":"MDQ6VXNlcjEzMTk2NzQ=","avatar_url":"https://avatars2.githubusercontent.com/u/1319674?v=4","gravatar_id":"","url":"https://api.github.com/users/andre-merzky","html_url":"https://github.com/andre-merzky","followers_url":"https://api.github.com/users/andre-merzky/followers","following_url":"https://api.github.com/users/andre-merzky/following{/other_user}","gists_url":"https://api.github.com/users/andre-merzky/gists{/gist_id}","starred_url":"https://api.github.com/users/andre-merzky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andre-merzky/subscriptions","organizations_url":"https://api.github.com/users/andre-merzky/orgs","repos_url":"https://api.github.com/users/andre-merzky/repos","events_url":"https://api.github.com/users/andre-merzky/events{/privacy}","received_events_url":"https://api.github.com/users/andre-merzky/received_events","type":"User","site_admin":false}],"milestone":null,"comments":13,"created_at":"2018-08-02T22:32:39Z","updated_at":"2018-08-07T08:31:54Z","closed_at":null,"author_association":"COLLABORATOR","body":"The ana_task tasks fails with mpi4py import error:\r\n```\r\nModuleCmd_Switch.c(179):ERROR:152: Module 'PrgEnv-cray' is currently not loaded\r\nTraceback (most recent call last):\r\n  File \"/var//opt/cray/alps/spool/68773952/lsdmap\", line 3, in <module>\r\n    import lsdmap.lsdm as lsdm\r\n  File \"/mnt/b/projects/sciteam/bamm/hruska/vpy2/lib/python2.7/site-packages/lsdmap/lsdm.py\", line 13, in <module>\r\n    from lsdmap.mpi import p_arpack\r\n  File \"/mnt/b/projects/sciteam/bamm/hruska/vpy2/lib/python2.7/site-packages/lsdmap/mpi/p_arpack.py\", line 7, in <module>\r\n    from mpi4py import MPI\r\nImportError: No module named mpi4py\r\n```\r\nBut when I run the same command in same environment on bw on it's own there is no issue at all:\r\n```\r\n/opt/xalt/0.7.6/sles11.3/bin/aprun -n 1 -N 1 -d 1 -cc 0 lsdmap \"-f\" \"config.ini\" \"-c\" \"tmpha.gro\" \"-n\" \"out.nn\" \"-w\" \"weight.w\"\r\n```"},"comment":{"url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/issues/comments/410978185","html_url":"https://github.com/radical-collaboration/extasy-grlsd/issues/56#issuecomment-410978185","issue_url":"https://api.github.com/repos/radical-collaboration/extasy-grlsd/issues/56","id":410978185,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMDk3ODE4NQ==","user":{"login":"andre-merzky","id":1319674,"node_id":"MDQ6VXNlcjEzMTk2NzQ=","avatar_url":"https://avatars2.githubusercontent.com/u/1319674?v=4","gravatar_id":"","url":"https://api.github.com/users/andre-merzky","html_url":"https://github.com/andre-merzky","followers_url":"https://api.github.com/users/andre-merzky/followers","following_url":"https://api.github.com/users/andre-merzky/following{/other_user}","gists_url":"https://api.github.com/users/andre-merzky/gists{/gist_id}","starred_url":"https://api.github.com/users/andre-merzky/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andre-merzky/subscriptions","organizations_url":"https://api.github.com/users/andre-merzky/orgs","repos_url":"https://api.github.com/users/andre-merzky/repos","events_url":"https://api.github.com/users/andre-merzky/events{/privacy}","received_events_url":"https://api.github.com/users/andre-merzky/received_events","type":"User","site_admin":false},"created_at":"2018-08-07T08:31:54Z","updated_at":"2018-08-07T08:31:54Z","author_association":"NONE","body":"I also don't see what's up with that, really.  I guess we can narrow this down by submitting (a reduced version of) the CU startup script via qsub.  @euhruska , can you try to submit this script:\r\n\r\n```\r\n\r\nexport OMP_NUM_THREADS=\"1\"\r\n\r\nmodule swap PrgEnv-cray PrgEnv-gnu ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule add bwpy ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule add bwpy-mpi ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule add fftw ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule add cray-netcdf ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule add cudatoolkit/7.5.18-1.0502.10743.2.1 ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule add cmake ||  (echo \"pre_exec failed\"; false) || exit\r\nmodule unload darshan, xalt ||  (echo \"pre_exec failed\"; false) || exit\r\nexport CRAYPE_LINK_TYPE=dynamic ||  (echo \"pre_exec failed\"; false) || exit\r\nexport CRAY_ADD_RPATH=yes ||  (echo \"pre_exec failed\"; false) || exit\r\nexport FC=ftn ||  (echo \"pre_exec failed\"; false) || exit\r\nsource /projects/sciteam/bamm/hruska/vpy2/bin/activate ||  (echo \"pre_exec failed\"; false) || exit\r\nexport tasks=lsdmap ||  (echo \"pre_exec failed\"; false) || exit\r\nexport iter=0 ||  (echo \"pre_exec failed\"; false) || exit\r\nexport OMP_NUM_THREADS=1 ||  (echo \"pre_exec failed\"; false) || exit\r\n\r\n/opt/xalt/0.7.6/sles11.3/bin/aprun -n 1 -N 1 -L 11660 -d 1 -cc 0 lsdmap \"-f\" \"config.ini\" \"-c\" \"tmpha.gro\" \"-n\" \"out.nn\" \"-w\" \"weight.w\"\r\n```\r\n\r\nThanks!"}}
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