{"action":"closed","issue":{"url":"https://api.github.com/repos/OpenMS/OpenMS/issues/2508","repository_url":"https://api.github.com/repos/OpenMS/OpenMS","labels_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/2508/labels{/name}","comments_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/2508/comments","events_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/2508/events","html_url":"https://github.com/OpenMS/OpenMS/issues/2508","id":220570447,"number":2508,"title":"ERROR PeptideIndexer","user":{"login":"OnlyBelter","id":16537617,"avatar_url":"https://avatars3.githubusercontent.com/u/16537617?v=4","gravatar_id":"","url":"https://api.github.com/users/OnlyBelter","html_url":"https://github.com/OnlyBelter","followers_url":"https://api.github.com/users/OnlyBelter/followers","following_url":"https://api.github.com/users/OnlyBelter/following{/other_user}","gists_url":"https://api.github.com/users/OnlyBelter/gists{/gist_id}","starred_url":"https://api.github.com/users/OnlyBelter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/OnlyBelter/subscriptions","organizations_url":"https://api.github.com/users/OnlyBelter/orgs","repos_url":"https://api.github.com/users/OnlyBelter/repos","events_url":"https://api.github.com/users/OnlyBelter/events{/privacy}","received_events_url":"https://api.github.com/users/OnlyBelter/received_events","type":"User","site_admin":false},"labels":[{"id":74106459,"url":"https://api.github.com/repos/OpenMS/OpenMS/labels/defect","name":"defect","color":"f7c6c7","default":false}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":11,"created_at":"2017-04-10T08:23:38Z","updated_at":"2018-02-07T11:44:26Z","closed_at":"2018-02-07T11:44:26Z","author_association":"NONE","body":"I follow \"[OpenMS_Usertutorial](https://github-cloud.s3.amazonaws.com/releases/39503532/29927a48-2f1f-11e6-9233-2589c6c34cd7.pdf?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAISTNZFOVBIJMK3TQ%2F20170410%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20170410T081857Z&X-Amz-Expires=300&X-Amz-Signature=a3b7656593b99582c1b14eeb1960761230a6ee5ee245401aca7dd1bce9d37748&X-Amz-SignedHeaders=host&actor_id=16537617&response-content-disposition=attachment%3B%20filename%3DOpenMS_Usertutorial.pdf&response-content-type=application%2Foctet-stream)\" in KNIME, all is well until page 26 - \"OMSSA ID pipeline including FDR filtering\". When I run \"PeptideIndexer\" node, I get the following message:\r\n\r\n```\r\nERROR PeptideIndexer       2:8        Failing process stdout: [Mapping 4302 peptides to 7614 proteins., Using suffix array to find ambiguous matches..., Peptide hits passing enzyme filter: 7904,      ... rejected by enzyme filter: 36, -----------------------------------, Peptides statistics, ,   target/decoy:,     match to target DB only: 2978,     match to decoy DB only : 1324,     match to both          : 0, ,   mapping to proteins:,     no match (to 0 protein)         : 0,     unique match (to 1 protein)     : 793,     non-unique match (to >1 protein): 3509, -----------------------------------, Protein statistics, ,   new proteins: 2651,   orphaned proteins: 2650 (all kept), Error: Unexpected internal error ( ProteinHits do not contain a protein sequence. Cannot compute coverage! Use PeptideIndexer to annotate proteins with sequence information.)]\r\nERROR PeptideIndexer       2:8        Failing process stderr: []\r\nERROR PeptideIndexer       2:8        Execute failed: Failed to execute node PeptideIndexer\r\n```\r\n\r\nPlease help me figure out, what's the problem."}}
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