{"action":"created","issue":{"url":"https://api.github.com/repos/ANTsX/ANTs/issues/614","repository_url":"https://api.github.com/repos/ANTsX/ANTs","labels_url":"https://api.github.com/repos/ANTsX/ANTs/issues/614/labels{/name}","comments_url":"https://api.github.com/repos/ANTsX/ANTs/issues/614/comments","events_url":"https://api.github.com/repos/ANTsX/ANTs/issues/614/events","html_url":"https://github.com/ANTsX/ANTs/issues/614","id":344619396,"node_id":"MDU6SXNzdWUzNDQ2MTkzOTY=","number":614,"title":"can't read initial transform ANTs0GenericAffine.mat","user":{"login":"carolin31","id":41706947,"node_id":"MDQ6VXNlcjQxNzA2OTQ3","avatar_url":"https://avatars0.githubusercontent.com/u/41706947?v=4","gravatar_id":"","url":"https://api.github.com/users/carolin31","html_url":"https://github.com/carolin31","followers_url":"https://api.github.com/users/carolin31/followers","following_url":"https://api.github.com/users/carolin31/following{/other_user}","gists_url":"https://api.github.com/users/carolin31/gists{/gist_id}","starred_url":"https://api.github.com/users/carolin31/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/carolin31/subscriptions","organizations_url":"https://api.github.com/users/carolin31/orgs","repos_url":"https://api.github.com/users/carolin31/repos","events_url":"https://api.github.com/users/carolin31/events{/privacy}","received_events_url":"https://api.github.com/users/carolin31/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-25T21:47:02Z","updated_at":"2018-07-25T22:14:58Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nI am trying to run antsApplyTransforms to apply the transformation parameters from a structural-to-template warping to functional data (bucket data set from afni, which contains several sub-bricks with each sub-brick giving beta weights or t-values for a specific regressor of interest). structural and functional data have been of course previously coregisterd to each other.\r\nI used the following code:\r\nantsApplyTransforms -d 4 -v 1 -r Zach_Template.nii -i stats.s201_REML.nii -o stats_warped_ -t ANTs1Warp.nii.gz -t ANTs0GenericAffine.mat\r\n\r\nI get the following message:\r\n\r\nUsing double precision for computations.\r\nInput scalar image: stats.s201_REML.nii\r\nReference image: Zach_Template.nii\r\nCan't read initial transform ANTs0GenericAffine.mat\r\n\r\nI found that somebody posted a similar problem on source forge:https://sourceforge.net/p/advants/discussion/840261/thread/c0485b2c/?limit=25\r\n\r\nI still don t understand what causes the problem and how I can fix it?\r\n\r\nThank you in advance \r\nCarolin\r\n"},"comment":{"url":"https://api.github.com/repos/ANTsX/ANTs/issues/comments/407913971","html_url":"https://github.com/ANTsX/ANTs/issues/614#issuecomment-407913971","issue_url":"https://api.github.com/repos/ANTsX/ANTs/issues/614","id":407913971,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzkxMzk3MQ==","user":{"login":"ntustison","id":324811,"node_id":"MDQ6VXNlcjMyNDgxMQ==","avatar_url":"https://avatars2.githubusercontent.com/u/324811?v=4","gravatar_id":"","url":"https://api.github.com/users/ntustison","html_url":"https://github.com/ntustison","followers_url":"https://api.github.com/users/ntustison/followers","following_url":"https://api.github.com/users/ntustison/following{/other_user}","gists_url":"https://api.github.com/users/ntustison/gists{/gist_id}","starred_url":"https://api.github.com/users/ntustison/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ntustison/subscriptions","organizations_url":"https://api.github.com/users/ntustison/orgs","repos_url":"https://api.github.com/users/ntustison/repos","events_url":"https://api.github.com/users/ntustison/events{/privacy}","received_events_url":"https://api.github.com/users/ntustison/received_events","type":"User","site_admin":false},"created_at":"2018-07-25T22:14:57Z","updated_at":"2018-07-25T22:14:57Z","author_association":"COLLABORATOR","body":"Hi @carolin31 , Can you post the data so I can check it on my machine?\r\n"}}
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