{"action":"created","issue":{"url":"https://api.github.com/repos/pombase/fypo/issues/3332","repository_url":"https://api.github.com/repos/pombase/fypo","labels_url":"https://api.github.com/repos/pombase/fypo/issues/3332/labels{/name}","comments_url":"https://api.github.com/repos/pombase/fypo/issues/3332/comments","events_url":"https://api.github.com/repos/pombase/fypo/issues/3332/events","html_url":"https://github.com/pombase/fypo/issues/3332","id":341870149,"node_id":"MDU6SXNzdWUzNDE4NzAxNDk=","number":3332,"title":"merge up \"residue\" terms phosphorylation","user":{"login":"ValWood","id":7359272,"node_id":"MDQ6VXNlcjczNTkyNzI=","avatar_url":"https://avatars2.githubusercontent.com/u/7359272?v=4","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"labels":[{"id":232743871,"node_id":"MDU6TGFiZWwyMzI3NDM4NzE=","url":"https://api.github.com/repos/pombase/fypo/labels/other%20ontology%20change","name":"other ontology change","color":"bfdadc","default":false}],"state":"open","locked":false,"assignee":{"login":"mah11","id":5196259,"node_id":"MDQ6VXNlcjUxOTYyNTk=","avatar_url":"https://avatars0.githubusercontent.com/u/5196259?v=4","gravatar_id":"","url":"https://api.github.com/users/mah11","html_url":"https://github.com/mah11","followers_url":"https://api.github.com/users/mah11/followers","following_url":"https://api.github.com/users/mah11/following{/other_user}","gists_url":"https://api.github.com/users/mah11/gists{/gist_id}","starred_url":"https://api.github.com/users/mah11/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mah11/subscriptions","organizations_url":"https://api.github.com/users/mah11/orgs","repos_url":"https://api.github.com/users/mah11/repos","events_url":"https://api.github.com/users/mah11/events{/privacy}","received_events_url":"https://api.github.com/users/mah11/received_events","type":"User","site_admin":false},"assignees":[{"login":"mah11","id":5196259,"node_id":"MDQ6VXNlcjUxOTYyNTk=","avatar_url":"https://avatars0.githubusercontent.com/u/5196259?v=4","gravatar_id":"","url":"https://api.github.com/users/mah11","html_url":"https://github.com/mah11","followers_url":"https://api.github.com/users/mah11/followers","following_url":"https://api.github.com/users/mah11/following{/other_user}","gists_url":"https://api.github.com/users/mah11/gists{/gist_id}","starred_url":"https://api.github.com/users/mah11/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mah11/subscriptions","organizations_url":"https://api.github.com/users/mah11/orgs","repos_url":"https://api.github.com/users/mah11/repos","events_url":"https://api.github.com/users/mah11/events{/privacy}","received_events_url":"https://api.github.com/users/mah11/received_events","type":"User","site_admin":false}],"milestone":null,"comments":6,"created_at":"2018-07-17T11:01:12Z","updated_at":"2018-07-17T13:33:45Z","closed_at":null,"author_association":"MEMBER","body":"\r\nI think we should merge up \"residue\" terms phosphorylation\r\nwe don't appear to have many annotations to these, it's just  these ones: and a few more\r\n\r\n![merge up](https://user-images.githubusercontent.com/7359272/42813243-3856c502-89b8-11e8-83f9-e52595554030.jpg)\r\n\r\n\r\nI don' think this difference is important to capture. More important that we have the residue captured on the modification. In the phenotype annotations   we can now capture this  with an extension. If we know its ser or thr we will usually know which residue. If we don't we can just call \"phosphorylation\"\r\n\r\nI have never used this particular specificity because it isn't very sustainable.\r\n\r\nHowever in the feedback for the session I am checking I am getting:\r\nsuggestions to change terms:\r\n\r\n![suggestions](https://user-images.githubusercontent.com/7359272/42813374-ae7a97a4-89b8-11e8-958e-25957e9d3e78.jpg)\r\n\r\n\r\nSo we will have inconsistency too.\r\n\r\nI think it's better to bite the bullet and resolve sooner rather than letting them build up further...\r\n"},"comment":{"url":"https://api.github.com/repos/pombase/fypo/issues/comments/405583411","html_url":"https://github.com/pombase/fypo/issues/3332#issuecomment-405583411","issue_url":"https://api.github.com/repos/pombase/fypo/issues/3332","id":405583411,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNTU4MzQxMQ==","user":{"login":"ValWood","id":7359272,"node_id":"MDQ6VXNlcjczNTkyNzI=","avatar_url":"https://avatars2.githubusercontent.com/u/7359272?v=4","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"created_at":"2018-07-17T13:33:45Z","updated_at":"2018-07-17T13:33:45Z","author_association":"MEMBER","body":"I know you don't like me including screenshots, but I find them quick and useful prompts when I refer back to the ticket,  (in this case a  feel for the number of times they were used). For this reason I will continue to do it (you can ignore them). "}}
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