{"action":"created","issue":{"url":"https://api.github.com/repos/seqcode/miniMDS/issues/13","repository_url":"https://api.github.com/repos/seqcode/miniMDS","labels_url":"https://api.github.com/repos/seqcode/miniMDS/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/seqcode/miniMDS/issues/13/comments","events_url":"https://api.github.com/repos/seqcode/miniMDS/issues/13/events","html_url":"https://github.com/seqcode/miniMDS/issues/13","id":342081115,"node_id":"MDU6SXNzdWUzNDIwODExMTU=","number":13,"title":"IndexError: Tuple index out of range","user":{"login":"hanfu-bios","id":31316221,"node_id":"MDQ6VXNlcjMxMzE2MjIx","avatar_url":"https://avatars1.githubusercontent.com/u/31316221?v=4","gravatar_id":"","url":"https://api.github.com/users/hanfu-bios","html_url":"https://github.com/hanfu-bios","followers_url":"https://api.github.com/users/hanfu-bios/followers","following_url":"https://api.github.com/users/hanfu-bios/following{/other_user}","gists_url":"https://api.github.com/users/hanfu-bios/gists{/gist_id}","starred_url":"https://api.github.com/users/hanfu-bios/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hanfu-bios/subscriptions","organizations_url":"https://api.github.com/users/hanfu-bios/orgs","repos_url":"https://api.github.com/users/hanfu-bios/repos","events_url":"https://api.github.com/users/hanfu-bios/events{/privacy}","received_events_url":"https://api.github.com/users/hanfu-bios/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2018-07-17T20:54:58Z","updated_at":"2018-07-24T21:59:45Z","closed_at":null,"author_association":"NONE","body":"I tried to run the package with human chromosome data from chromosome 1 to chromosome 22 with 1 Mb resolution. The data are formatted as below (count has been normalized):\r\n\r\nchr7 133000001 134000000 chr12   5000001   6000000 0.00197448599730519\r\n\r\nThe files were names according to the instructions.\r\n\r\nAfter identifying loci and reading data, an error occurred which said that \r\n```\r\nin partitionedMDS\r\n    alpha2 = args[6]\r\nIndexError: tuple index out of range\r\n```\r\n\r\nHas anyone had any idea how to debug this?\r\n\r\nThanks a lot!"},"comment":{"url":"https://api.github.com/repos/seqcode/miniMDS/issues/comments/407565950","html_url":"https://github.com/seqcode/miniMDS/issues/13#issuecomment-407565950","issue_url":"https://api.github.com/repos/seqcode/miniMDS/issues/13","id":407565950,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzU2NTk1MA==","user":{"login":"hanfu-bios","id":31316221,"node_id":"MDQ6VXNlcjMxMzE2MjIx","avatar_url":"https://avatars1.githubusercontent.com/u/31316221?v=4","gravatar_id":"","url":"https://api.github.com/users/hanfu-bios","html_url":"https://github.com/hanfu-bios","followers_url":"https://api.github.com/users/hanfu-bios/followers","following_url":"https://api.github.com/users/hanfu-bios/following{/other_user}","gists_url":"https://api.github.com/users/hanfu-bios/gists{/gist_id}","starred_url":"https://api.github.com/users/hanfu-bios/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hanfu-bios/subscriptions","organizations_url":"https://api.github.com/users/hanfu-bios/orgs","repos_url":"https://api.github.com/users/hanfu-bios/repos","events_url":"https://api.github.com/users/hanfu-bios/events{/privacy}","received_events_url":"https://api.github.com/users/hanfu-bios/received_events","type":"User","site_admin":false},"created_at":"2018-07-24T21:59:45Z","updated_at":"2018-07-24T21:59:45Z","author_association":"NONE","body":"Lila - thank you so much for your help! I can generate results from my data now. But I would like to replicate the results you sent me from Rao’s data. Can you show me where I can download Rao’s data or simply send me the data input if possible?\n\nMany thanks!\n\n\n> On Jul 18, 2018, at 3:23 PM, Lila Rieber <notifications@github.com> wrote:\n> \n> Sorry, that wasn't a very useful error message. I've updated the code to produce more useful messages. The issue was that there were empty rows in a matrix. This is because your input BED files had some lines with 0 counts, which is not allowed. I removed those lines when I tested your data (see attachment)\n> K562_cleaned.tar.gz <https://github.com/seqcode/miniMDS/files/2207069/K562_cleaned.tar.gz>\n> .\n> \n> —\n> You are receiving this because you authored the thread.\n> Reply to this email directly, view it on GitHub <https://github.com/seqcode/miniMDS/issues/13#issuecomment-406045539>, or mute the thread <https://github.com/notifications/unsubscribe-auth/Ad3Y_YJ8IHmettt-XhjP0tCGBmjz7IQBks5uH4sggaJpZM4VTjOB>.\n> \n\n"}}
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