{"action":"created","issue":{"url":"https://api.github.com/repos/MadsAlbertsen/mmgenome/issues/38","repository_url":"https://api.github.com/repos/MadsAlbertsen/mmgenome","labels_url":"https://api.github.com/repos/MadsAlbertsen/mmgenome/issues/38/labels{/name}","comments_url":"https://api.github.com/repos/MadsAlbertsen/mmgenome/issues/38/comments","events_url":"https://api.github.com/repos/MadsAlbertsen/mmgenome/issues/38/events","html_url":"https://github.com/MadsAlbertsen/mmgenome/issues/38","id":267700127,"number":38,"title":"Difficulty installing","user":{"login":"KasperSkytte","id":23030537,"avatar_url":"https://avatars2.githubusercontent.com/u/23030537?v=4","gravatar_id":"","url":"https://api.github.com/users/KasperSkytte","html_url":"https://github.com/KasperSkytte","followers_url":"https://api.github.com/users/KasperSkytte/followers","following_url":"https://api.github.com/users/KasperSkytte/following{/other_user}","gists_url":"https://api.github.com/users/KasperSkytte/gists{/gist_id}","starred_url":"https://api.github.com/users/KasperSkytte/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/KasperSkytte/subscriptions","organizations_url":"https://api.github.com/users/KasperSkytte/orgs","repos_url":"https://api.github.com/users/KasperSkytte/repos","events_url":"https://api.github.com/users/KasperSkytte/events{/privacy}","received_events_url":"https://api.github.com/users/KasperSkytte/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2017-10-23T14:55:05Z","updated_at":"2018-02-28T10:33:14Z","closed_at":null,"author_association":"NONE","body":"When installing mmgenome from scratch with:\r\n`source(\"https://bioconductor.org/biocLite.R\")`\r\n`biocLite(\"Biostrings\")`\r\n`devtools::install_github(\"madsalbertsen/mmgenome/mmgenome\")`\r\n it stops when installing a required package `Rtsne.multicore` with the error: \r\n\r\n> \"Error in FUN(X[[i]], ...) : \r\nInvalid comparison operator in dependency: >= \"\r\n\r\nSimply using `biocLite(\"madsalbertsen/mmgenome/mmgenome\")` instead causes no trouble!"},"comment":{"url":"https://api.github.com/repos/MadsAlbertsen/mmgenome/issues/comments/369197421","html_url":"https://github.com/MadsAlbertsen/mmgenome/issues/38#issuecomment-369197421","issue_url":"https://api.github.com/repos/MadsAlbertsen/mmgenome/issues/38","id":369197421,"user":{"login":"anaya1","id":16596065,"avatar_url":"https://avatars1.githubusercontent.com/u/16596065?v=4","gravatar_id":"","url":"https://api.github.com/users/anaya1","html_url":"https://github.com/anaya1","followers_url":"https://api.github.com/users/anaya1/followers","following_url":"https://api.github.com/users/anaya1/following{/other_user}","gists_url":"https://api.github.com/users/anaya1/gists{/gist_id}","starred_url":"https://api.github.com/users/anaya1/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/anaya1/subscriptions","organizations_url":"https://api.github.com/users/anaya1/orgs","repos_url":"https://api.github.com/users/anaya1/repos","events_url":"https://api.github.com/users/anaya1/events{/privacy}","received_events_url":"https://api.github.com/users/anaya1/received_events","type":"User","site_admin":false},"created_at":"2018-02-28T10:33:14Z","updated_at":"2018-02-28T10:33:14Z","author_association":"NONE","body":"Hi Kasper,\r\nI am really struggling installing mmgenome on my Mac OS X El Capitan system. \r\nI have a following message:\r\n> biocLite(\"madsalbertsen/mmgenome/mmgenome\")\r\nBioC_mirror: https://bioconductor.org\r\nUsing Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.3 (2017-11-30).\r\nInstalling github package(s) ‘madsalbertsen/mmgenome/mmgenome’\r\nDownloading GitHub repo madsalbertsen/mmgenome@master\r\nfrom URL https://api.github.com/repos/madsalbertsen/mmgenome/zipball/master\r\nInstalling mmgenome\r\nDownloading GitHub repo RGLab/Rtsne.multicore@master\r\nfrom URL https://api.github.com/repos/RGLab/Rtsne.multicore/zipball/master\r\nInstalling Rtsne.multicore\r\n'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore  \\\r\n  --quiet CMD INSTALL  \\\r\n  '/private/var/folders/9c/62h8z0yj7nv50l9zkmrw6_z80000gn/T/RtmpMpIoyA/devtools2ae1fe15aec/RGLab-Rtsne.multicore-7b4f8c6'  \\\r\n  --library='/Library/Frameworks/R.framework/Versions/3.4/Resources/library' --install-tests \r\n\r\n* installing *source* package ‘Rtsne.multicore’ ...\r\n** libs\r\nclang++ -std=gnu++11 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -DROUT -fopenmp -I\"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rcpp/include\" -I/usr/local/include   -fPIC  -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o\r\nclang: error: unsupported option '-fopenmp'\r\nmake: *** [RcppExports.o] Error 1\r\nERROR: compilation failed for package ‘Rtsne.multicore’\r\n* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/Rtsne.multicore’\r\nInstallation failed: Command failed (1)\r\n'/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore  \\\r\n  --quiet CMD INSTALL  \\\r\n  '/private/var/folders/9c/62h8z0yj7nv50l9zkmrw6_z80000gn/T/RtmpMpIoyA/devtools2ae4c71d75c/MadsAlbertsen-mmgenome-287aedd/mmgenome'  \\\r\n  --library='/Library/Frameworks/R.framework/Versions/3.4/Resources/library' --install-tests \r\n\r\nERROR: dependency ‘Rtsne.multicore’ is not available for package ‘mmgenome’\r\n* removing ‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library/mmgenome’\r\nInstallation failed: Command failed (1)\r\nDo you have any suggestion how to install mmgenome or how to compile Rtsne.multicore package on Mac system.\r\nThanks,\r\nAnna"}}
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