{"push_id":2495890904,"size":1,"distinct_size":1,"ref":"refs/heads/master","head":"ede8ceb8a3bec6121b94ed5122ab61fea8ab9957","before":"cd1abd31a49f355d8c614562e224e48905f9a6d1","commits":[{"sha":"ede8ceb8a3bec6121b94ed5122ab61fea8ab9957","author":{"name":"Konrad Karczewski","email":"9507b358122ec741af760c877fab41cd282c044b@gmail.com"},"message":"First pass of infer_families (#23)\n\n* First pass of infer_families\r\n\r\n* * Split get_duplicated_samples\r\n* New implementation of infer_families\r\n\r\n* Addressed review comments\r\n\r\n* Moved default thresholds\r\n\r\n* * sex should now be passed as a dict of boolean\r\n* better separation of first degree relatives/second degree relatives and kin/k2\r\n* bug fixes here and there\r\n\r\n* * More relaxed 1st degree relative default cutoff value\r\n* More stringent 2nd degree relative default cutoff value\r\n\r\n* start fam ids at 1 -- so that `0` is not evaluated to missing/false/None in some contexts\r\n\r\n* Added paths for fam data\r\n\r\n* * Added merged pedigree ht path\r\n* style\r\n\r\n* removed extra `_` when fake is false\r\n\r\n* Addressed review comments\r\n\r\n* * Moved fake fam path to a different function\r\n* Added all_dups option to raw_fam_path","distinct":true,"url":"https://api.github.com/repos/macarthur-lab/gnomad_hail/commits/ede8ceb8a3bec6121b94ed5122ab61fea8ab9957"}]}
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