{"action":"created","issue":{"url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis/issues/459","repository_url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis","labels_url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis/issues/459/labels{/name}","comments_url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis/issues/459/comments","events_url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis/issues/459/events","html_url":"https://github.com/MPAS-Dev/MPAS-Analysis/issues/459","id":371800730,"node_id":"MDU6SXNzdWUzNzE4MDA3MzA=","number":459,"title":"mpas-analysis does not support cdf-5 format files with e3sm-unified 1.2.2 and 1.2.3","user":{"login":"vanroekel","id":13662545,"node_id":"MDQ6VXNlcjEzNjYyNTQ1","avatar_url":"https://avatars3.githubusercontent.com/u/13662545?v=4","gravatar_id":"","url":"https://api.github.com/users/vanroekel","html_url":"https://github.com/vanroekel","followers_url":"https://api.github.com/users/vanroekel/followers","following_url":"https://api.github.com/users/vanroekel/following{/other_user}","gists_url":"https://api.github.com/users/vanroekel/gists{/gist_id}","starred_url":"https://api.github.com/users/vanroekel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vanroekel/subscriptions","organizations_url":"https://api.github.com/users/vanroekel/orgs","repos_url":"https://api.github.com/users/vanroekel/repos","events_url":"https://api.github.com/users/vanroekel/events{/privacy}","received_events_url":"https://api.github.com/users/vanroekel/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":12,"created_at":"2018-10-19T04:13:38Z","updated_at":"2018-10-23T06:50:47Z","closed_at":null,"author_association":"COLLABORATOR","body":"I tried running mpas-analysis (up to date version of develop) on the high res output on NERSC and get a log file full of errors like \r\n```\r\n:--:--Traceback (most recent call last):\r\n  File \"./run_mpas_analysis\", line 275, in add_task_and_subtasks\r\n    analysisTask.setup_and_check()\r\n  File \"/global/u2/l/lvroekel/MPAS-Analysis/mpas_analysis/shared/climatology/mpas_climatology_task.py\", line 216, in setup_and_check\r\n    with xarray.open_dataset(self.inputFiles[0]) as ds:\r\n  File \"/global/project/projectdirs/acme/software/anaconda_envs/edison/base/envs/e3sm_unified_1.2.2_py2.7_nox/lib/python2.7/site-packages/xarray/backends/api.py\", line 320, in open_dataset\r\n    **backend_kwargs)\r\n  File \"/global/project/projectdirs/acme/software/anaconda_envs/edison/base/envs/e3sm_unified_1.2.2_py2.7_nox/lib/python2.7/site-packages/xarray/backends/netCDF4_.py\", line 332, in open\r\n    ds = opener()\r\n  File \"/global/project/projectdirs/acme/software/anaconda_envs/edison/base/envs/e3sm_unified_1.2.2_py2.7_nox/lib/python2.7/site-packages/xarray/backends/netCDF4_.py\", line 231, in _open_netcdf4_group\r\n    ds = nc4.Dataset(filename, mode=mode, **kwargs)\r\n  File \"netCDF4/_netCDF4.pyx\", line 2126, in netCDF4._netCDF4.Dataset.__init__\r\n  File \"netCDF4/_netCDF4.pyx\", line 1368, in netCDF4._netCDF4._get_format\r\nValueError: format not supported by python interface\r\nERROR: analysis task mpasClimatologyOcean failed during check and will not be run\r\n```\r\n\r\nIf I return to e3sm-unified 1.2.0 the analysis runs okay.  I assume this is related either xarray, nco, or netcdf4 versioning and how it interacts with cdf5 files.\r\n\r\nThe config file is at ```/global/homes/l/lvroekel/MPAS-Analysis/config.highRes```"},"comment":{"url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis/issues/comments/432116687","html_url":"https://github.com/MPAS-Dev/MPAS-Analysis/issues/459#issuecomment-432116687","issue_url":"https://api.github.com/repos/MPAS-Dev/MPAS-Analysis/issues/459","id":432116687,"node_id":"MDEyOklzc3VlQ29tbWVudDQzMjExNjY4Nw==","user":{"login":"xylar","id":4179064,"node_id":"MDQ6VXNlcjQxNzkwNjQ=","avatar_url":"https://avatars0.githubusercontent.com/u/4179064?v=4","gravatar_id":"","url":"https://api.github.com/users/xylar","html_url":"https://github.com/xylar","followers_url":"https://api.github.com/users/xylar/followers","following_url":"https://api.github.com/users/xylar/following{/other_user}","gists_url":"https://api.github.com/users/xylar/gists{/gist_id}","starred_url":"https://api.github.com/users/xylar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/xylar/subscriptions","organizations_url":"https://api.github.com/users/xylar/orgs","repos_url":"https://api.github.com/users/xylar/repos","events_url":"https://api.github.com/users/xylar/events{/privacy}","received_events_url":"https://api.github.com/users/xylar/received_events","type":"User","site_admin":false},"created_at":"2018-10-23T06:50:47Z","updated_at":"2018-10-23T06:50:47Z","author_association":"COLLABORATOR","body":"Sorry about that.  Permissions should now be fixed."}}
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