{"action":"created","issue":{"url":"https://api.github.com/repos/tseemann/berokka/issues/12","repository_url":"https://api.github.com/repos/tseemann/berokka","labels_url":"https://api.github.com/repos/tseemann/berokka/issues/12/labels{/name}","comments_url":"https://api.github.com/repos/tseemann/berokka/issues/12/comments","events_url":"https://api.github.com/repos/tseemann/berokka/issues/12/events","html_url":"https://github.com/tseemann/berokka/issues/12","id":310800001,"number":12,"title":"MSG: trunc start,end -- there was no end for 1","user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars2.githubusercontent.com/u/453972?v=4","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"labels":[{"id":460650711,"url":"https://api.github.com/repos/tseemann/berokka/labels/bug","name":"bug","color":"ee0701","default":true}],"state":"open","locked":false,"assignee":{"login":"tseemann","id":453972,"avatar_url":"https://avatars2.githubusercontent.com/u/453972?v=4","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"assignees":[{"login":"tseemann","id":453972,"avatar_url":"https://avatars2.githubusercontent.com/u/453972?v=4","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-04-03T11:36:29Z","updated_at":"2018-04-03T13:01:38Z","closed_at":null,"author_association":"OWNER","body":"```\r\n*** [5] tig00003742 ***\r\nUsing first 3959 bp to BLAST\r\nWriting tig00003742 ( 3959 bp ) to 5.fa\r\nWriting tig00003742 ( 3959 bp ) to 5.head.fa\r\nRunning: blastn -query 5.head.fa -subject 5.fa -out 5.bls -evalue 1E-6 -dust no\r\nblastn: 2..3959/3959 aligns to 2..3959/3959 at 98.5 %id\r\ntig00003742 keep 1..0/3959 (remove 3960 bp)\r\n\r\n------------- EXCEPTION -------------\r\nMSG: trunc start,end -- there was no end for 1\r\nSTACK Bio::PrimarySeqI::trunc /home/linuxbrew/.linuxbrew/Cellar/perl/5.26.1_1/lib/perl5/site_perl/5.26.1/Bio/PrimarySeqI.pm:447\r\nSTACK main::check_overhang /home/tseemann/git/berokka/bin/berokka:149\r\nSTACK toplevel /home/tseemann/git/berokka/bin/berokka:74\r\n-------------------------------------\r\n\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/tseemann/berokka/issues/comments/378241640","html_url":"https://github.com/tseemann/berokka/issues/12#issuecomment-378241640","issue_url":"https://api.github.com/repos/tseemann/berokka/issues/12","id":378241640,"user":{"login":"tseemann","id":453972,"avatar_url":"https://avatars2.githubusercontent.com/u/453972?v=4","gravatar_id":"","url":"https://api.github.com/users/tseemann","html_url":"https://github.com/tseemann","followers_url":"https://api.github.com/users/tseemann/followers","following_url":"https://api.github.com/users/tseemann/following{/other_user}","gists_url":"https://api.github.com/users/tseemann/gists{/gist_id}","starred_url":"https://api.github.com/users/tseemann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tseemann/subscriptions","organizations_url":"https://api.github.com/users/tseemann/orgs","repos_url":"https://api.github.com/users/tseemann/repos","events_url":"https://api.github.com/users/tseemann/events{/privacy}","received_events_url":"https://api.github.com/users/tseemann/received_events","type":"User","site_admin":false},"created_at":"2018-04-03T13:01:38Z","updated_at":"2018-04-03T13:01:38Z","author_association":"OWNER","body":"Turns out this is a pacbio control sequence ~ 4000 bp!\r\nAnd it is a palindrome.\r\n\r\nI now realise that to circularise the hit must be on strand + / +\r\n"}}
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