{"action":"opened","issue":{"url":"https://api.github.com/repos/nextstrain/augur/issues/181","repository_url":"https://api.github.com/repos/nextstrain/augur","labels_url":"https://api.github.com/repos/nextstrain/augur/issues/181/labels{/name}","comments_url":"https://api.github.com/repos/nextstrain/augur/issues/181/comments","events_url":"https://api.github.com/repos/nextstrain/augur/issues/181/events","html_url":"https://github.com/nextstrain/augur/issues/181","id":342804541,"node_id":"MDU6SXNzdWUzNDI4MDQ1NDE=","number":181,"title":"create conda install script / yaml","user":{"login":"jameshadfield","id":8350992,"node_id":"MDQ6VXNlcjgzNTA5OTI=","avatar_url":"https://avatars1.githubusercontent.com/u/8350992?v=4","gravatar_id":"","url":"https://api.github.com/users/jameshadfield","html_url":"https://github.com/jameshadfield","followers_url":"https://api.github.com/users/jameshadfield/followers","following_url":"https://api.github.com/users/jameshadfield/following{/other_user}","gists_url":"https://api.github.com/users/jameshadfield/gists{/gist_id}","starred_url":"https://api.github.com/users/jameshadfield/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jameshadfield/subscriptions","organizations_url":"https://api.github.com/users/jameshadfield/orgs","repos_url":"https://api.github.com/users/jameshadfield/repos","events_url":"https://api.github.com/users/jameshadfield/events{/privacy}","received_events_url":"https://api.github.com/users/jameshadfield/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-19T16:37:05Z","updated_at":"2018-07-19T16:37:05Z","closed_at":null,"author_association":"MEMBER","body":"We use conda to install dependencies for the travisCI build scripts (https://github.com/nextstrain/augur/blob/master/.travis.yml), and conda is frequently used in the bioinformatics community. I would like augur to contain a conda `meta.yaml` file to install non-pip dependencies. One would then run `pip` after installing & activating the conda env, just as is done in the travis script. \r\n\r\nThis yaml file could be used inside the travis script (as an aside, I thought you had to run `source activate test-environment` before you ran `conda install...`)"}}
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