{"action":"created","issue":{"url":"https://api.github.com/repos/wdecoster/NanoPlot/issues/46","repository_url":"https://api.github.com/repos/wdecoster/NanoPlot","labels_url":"https://api.github.com/repos/wdecoster/NanoPlot/issues/46/labels{/name}","comments_url":"https://api.github.com/repos/wdecoster/NanoPlot/issues/46/comments","events_url":"https://api.github.com/repos/wdecoster/NanoPlot/issues/46/events","html_url":"https://github.com/wdecoster/NanoPlot/issues/46","id":296531526,"number":46,"title":"NanoP","user":{"login":"gwaldbieser","id":19332698,"avatar_url":"https://avatars2.githubusercontent.com/u/19332698?v=4","gravatar_id":"","url":"https://api.github.com/users/gwaldbieser","html_url":"https://github.com/gwaldbieser","followers_url":"https://api.github.com/users/gwaldbieser/followers","following_url":"https://api.github.com/users/gwaldbieser/following{/other_user}","gists_url":"https://api.github.com/users/gwaldbieser/gists{/gist_id}","starred_url":"https://api.github.com/users/gwaldbieser/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gwaldbieser/subscriptions","organizations_url":"https://api.github.com/users/gwaldbieser/orgs","repos_url":"https://api.github.com/users/gwaldbieser/repos","events_url":"https://api.github.com/users/gwaldbieser/events{/privacy}","received_events_url":"https://api.github.com/users/gwaldbieser/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"wdecoster","id":11660522,"avatar_url":"https://avatars2.githubusercontent.com/u/11660522?v=4","gravatar_id":"","url":"https://api.github.com/users/wdecoster","html_url":"https://github.com/wdecoster","followers_url":"https://api.github.com/users/wdecoster/followers","following_url":"https://api.github.com/users/wdecoster/following{/other_user}","gists_url":"https://api.github.com/users/wdecoster/gists{/gist_id}","starred_url":"https://api.github.com/users/wdecoster/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wdecoster/subscriptions","organizations_url":"https://api.github.com/users/wdecoster/orgs","repos_url":"https://api.github.com/users/wdecoster/repos","events_url":"https://api.github.com/users/wdecoster/events{/privacy}","received_events_url":"https://api.github.com/users/wdecoster/received_events","type":"User","site_admin":false},"assignees":[{"login":"wdecoster","id":11660522,"avatar_url":"https://avatars2.githubusercontent.com/u/11660522?v=4","gravatar_id":"","url":"https://api.github.com/users/wdecoster","html_url":"https://github.com/wdecoster","followers_url":"https://api.github.com/users/wdecoster/followers","following_url":"https://api.github.com/users/wdecoster/following{/other_user}","gists_url":"https://api.github.com/users/wdecoster/gists{/gist_id}","starred_url":"https://api.github.com/users/wdecoster/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wdecoster/subscriptions","organizations_url":"https://api.github.com/users/wdecoster/orgs","repos_url":"https://api.github.com/users/wdecoster/repos","events_url":"https://api.github.com/users/wdecoster/events{/privacy}","received_events_url":"https://api.github.com/users/wdecoster/received_events","type":"User","site_admin":false}],"milestone":null,"comments":4,"created_at":"2018-02-12T21:32:04Z","updated_at":"2018-02-12T22:40:54Z","closed_at":"2018-02-12T22:40:54Z","author_association":"NONE","body":"Hi Wouter,\r\nI'm running NanoPlot on OpenSUSELeap and receive an error during the analysis. It still produces graphs.\r\nI've attached the log file.\r\n\r\n**Command**\r\n# NanoPlot --summary HybSC17L30_1ug_20180209/sequencing_summary_*.txt HybSC17L30_1ugB_20180209/sequencing_summary_*.txt --loglength -o plot2test &\r\n\r\n**Written output**\r\n# ll plot2test/\r\ntotal 492\r\n-rw-r--r-- 1 root root  24688 Feb 12 16:23 ActivityMap_ReadsPerChannel.png\r\n-rw-r--r-- 1 root root  24298 Feb 12 16:23 CumulativeYieldPlot_Gigabases.png\r\n-rw-r--r-- 1 root root  28445 Feb 12 16:23 CumulativeYieldPlot_NumberOfReads.png\r\n-rw-r--r-- 1 root root  20582 Feb 12 16:22 HistogramReadlength.png\r\n-rw-r--r-- 1 root root 250491 Feb 12 16:23 Log_LengthvsQualityScatterPlot_dot.png\r\n-rw-r--r-- 1 root root  53410 Feb 12 16:23 Log_LengthvsQualityScatterPlot_kde.png\r\n-rw-r--r-- 1 root root  20277 Feb 12 16:22 LogTransformed_HistogramReadlength.png\r\n-rw-r--r-- 1 root root   6438 Feb 12 16:23 NanoPlot_20180212_1622.log\r\n-rw-r--r-- 1 root root   1031 Feb 12 16:22 NanoStats.txt\r\n-rw-r--r-- 1 root root  27010 Feb 12 16:22 Weighted_HistogramReadlength.png\r\n-rw-r--r-- 1 root root  21550 Feb 12 16:23 Weighted_LogTransformed_HistogramReadlength.png\r\n\r\n--------------------------------------------------------\r\n**Error message:**\r\n# /root/anaconda3/lib/python3.5/site-packages/statsmodels/nonparametric/kdetools.py:20: VisibleDeprecationWarning: using a non-integer number instead of an integer will result in an error in the future\r\n  y = X[:m/2+1] + np.r_[0,X[m/2+1:],0]*1j\r\n\r\n\r\n\r\nIf you read this then NanoPlot has crashed :-(\r\nPlease report this issue at https://github.com/wdecoster/NanoPlot/issues\r\nIf you include the log file that would be really helpful.\r\nThanks!\r\n\r\n\r\n\r\nTraceback (most recent call last):\r\n  File \"/root/anaconda3/bin/NanoPlot\", line 11, in <module>\r\n    sys.exit(main())\r\n  File \"/root/anaconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py\", line 86, in main\r\n    plots = make_plots(datadf, settings)\r\n  File \"/root/anaconda3/lib/python3.5/site-packages/nanoplot/NanoPlot.py\", line 379, in make_plots\r\n    title=settings[\"title\"])\r\n  File \"/root/anaconda3/lib/python3.5/site-packages/nanoplotter/nanoplotter.py\", line 324, in time_plots\r\n    labels=labels)\r\n  File \"/root/anaconda3/lib/python3.5/site-packages/pandas/tools/tile.py\", line 96, in cut\r\n    mn, mx = [mi + 0.0 for mi in rng]\r\n  File \"/root/anaconda3/lib/python3.5/site-packages/pandas/tools/tile.py\", line 96, in <listcomp>\r\n    mn, mx = [mi + 0.0 for mi in rng]\r\nTypeError: unsupported operand type(s) for +: 'Timedelta' and 'float'\r\n\r\n\r\n\r\n[NanoPlot_20180212_1622.log](https://github.com/wdecoster/NanoPlot/files/1717780/NanoPlot_20180212_1622.log)\r\n"},"comment":{"url":"https://api.github.com/repos/wdecoster/NanoPlot/issues/comments/365088058","html_url":"https://github.com/wdecoster/NanoPlot/issues/46#issuecomment-365088058","issue_url":"https://api.github.com/repos/wdecoster/NanoPlot/issues/46","id":365088058,"user":{"login":"wdecoster","id":11660522,"avatar_url":"https://avatars2.githubusercontent.com/u/11660522?v=4","gravatar_id":"","url":"https://api.github.com/users/wdecoster","html_url":"https://github.com/wdecoster","followers_url":"https://api.github.com/users/wdecoster/followers","following_url":"https://api.github.com/users/wdecoster/following{/other_user}","gists_url":"https://api.github.com/users/wdecoster/gists{/gist_id}","starred_url":"https://api.github.com/users/wdecoster/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wdecoster/subscriptions","organizations_url":"https://api.github.com/users/wdecoster/orgs","repos_url":"https://api.github.com/users/wdecoster/repos","events_url":"https://api.github.com/users/wdecoster/events{/privacy}","received_events_url":"https://api.github.com/users/wdecoster/received_events","type":"User","site_admin":false},"created_at":"2018-02-12T22:40:54Z","updated_at":"2018-02-12T22:40:54Z","author_association":"OWNER","body":"I'm glad that it wasn't too hard to fix this problem! Please let me know if you encounter further issues or have suggestions/feature requests.\r\n\r\nCheers,\r\nW"}}
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