{"action":"opened","issue":{"url":"https://api.github.com/repos/sdparekh/zUMIs/issues/49","repository_url":"https://api.github.com/repos/sdparekh/zUMIs","labels_url":"https://api.github.com/repos/sdparekh/zUMIs/issues/49/labels{/name}","comments_url":"https://api.github.com/repos/sdparekh/zUMIs/issues/49/comments","events_url":"https://api.github.com/repos/sdparekh/zUMIs/issues/49/events","html_url":"https://github.com/sdparekh/zUMIs/issues/49","id":344361114,"node_id":"MDU6SXNzdWUzNDQzNjExMTQ=","number":49,"title":"Multiple fastq files (multiple samples) ","user":{"login":"gk-bioin4m8x","id":612209,"node_id":"MDQ6VXNlcjYxMjIwOQ==","avatar_url":"https://avatars2.githubusercontent.com/u/612209?v=4","gravatar_id":"","url":"https://api.github.com/users/gk-bioin4m8x","html_url":"https://github.com/gk-bioin4m8x","followers_url":"https://api.github.com/users/gk-bioin4m8x/followers","following_url":"https://api.github.com/users/gk-bioin4m8x/following{/other_user}","gists_url":"https://api.github.com/users/gk-bioin4m8x/gists{/gist_id}","starred_url":"https://api.github.com/users/gk-bioin4m8x/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gk-bioin4m8x/subscriptions","organizations_url":"https://api.github.com/users/gk-bioin4m8x/orgs","repos_url":"https://api.github.com/users/gk-bioin4m8x/repos","events_url":"https://api.github.com/users/gk-bioin4m8x/events{/privacy}","received_events_url":"https://api.github.com/users/gk-bioin4m8x/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-25T09:20:27Z","updated_at":"2018-07-25T09:20:27Z","closed_at":null,"author_association":"NONE","body":"Hi @sdparekh \r\nI have followed https://github.com/sdparekh/zUMIs/wiki/Usage . However, I am wondering if I have multiple fastq.gz files (multiple samples), how would I start? Can I input the folder with multiple fastq files (including transcript fastq and barcode fastq) in the bash script with *? Will it automatically detect from the name that two files (for e.g. 3_R1.fastq.gz for barcode and 3_R2.fastq.gz for transcript belong to sample 3). Please guide.\r\n\r\nThanks."}}
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