{"action":"created","issue":{"url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor/issues/213","repository_url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor","labels_url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor/issues/213/labels{/name}","comments_url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor/issues/213/comments","events_url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor/issues/213/events","html_url":"https://github.com/PistoiaHELM/HELMWebEditor/issues/213","id":350047535,"node_id":"MDU6SXNzdWUzNTAwNDc1MzU=","number":213,"title":"Users should not be able to specify the R group number for * monomers","user":{"login":"ClairePA","id":3986896,"node_id":"MDQ6VXNlcjM5ODY4OTY=","avatar_url":"https://avatars0.githubusercontent.com/u/3986896?v=4","gravatar_id":"","url":"https://api.github.com/users/ClairePA","html_url":"https://github.com/ClairePA","followers_url":"https://api.github.com/users/ClairePA/followers","following_url":"https://api.github.com/users/ClairePA/following{/other_user}","gists_url":"https://api.github.com/users/ClairePA/gists{/gist_id}","starred_url":"https://api.github.com/users/ClairePA/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClairePA/subscriptions","organizations_url":"https://api.github.com/users/ClairePA/orgs","repos_url":"https://api.github.com/users/ClairePA/repos","events_url":"https://api.github.com/users/ClairePA/events{/privacy}","received_events_url":"https://api.github.com/users/ClairePA/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"ClairePA","id":3986896,"node_id":"MDQ6VXNlcjM5ODY4OTY=","avatar_url":"https://avatars0.githubusercontent.com/u/3986896?v=4","gravatar_id":"","url":"https://api.github.com/users/ClairePA","html_url":"https://github.com/ClairePA","followers_url":"https://api.github.com/users/ClairePA/followers","following_url":"https://api.github.com/users/ClairePA/following{/other_user}","gists_url":"https://api.github.com/users/ClairePA/gists{/gist_id}","starred_url":"https://api.github.com/users/ClairePA/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClairePA/subscriptions","organizations_url":"https://api.github.com/users/ClairePA/orgs","repos_url":"https://api.github.com/users/ClairePA/repos","events_url":"https://api.github.com/users/ClairePA/events{/privacy}","received_events_url":"https://api.github.com/users/ClairePA/received_events","type":"User","site_admin":false},"assignees":[{"login":"ClairePA","id":3986896,"node_id":"MDQ6VXNlcjM5ODY4OTY=","avatar_url":"https://avatars0.githubusercontent.com/u/3986896?v=4","gravatar_id":"","url":"https://api.github.com/users/ClairePA","html_url":"https://github.com/ClairePA","followers_url":"https://api.github.com/users/ClairePA/followers","following_url":"https://api.github.com/users/ClairePA/following{/other_user}","gists_url":"https://api.github.com/users/ClairePA/gists{/gist_id}","starred_url":"https://api.github.com/users/ClairePA/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClairePA/subscriptions","organizations_url":"https://api.github.com/users/ClairePA/orgs","repos_url":"https://api.github.com/users/ClairePA/repos","events_url":"https://api.github.com/users/ClairePA/events{/privacy}","received_events_url":"https://api.github.com/users/ClairePA/received_events","type":"User","site_admin":false},{"login":"scilligence","id":19560173,"node_id":"MDQ6VXNlcjE5NTYwMTcz","avatar_url":"https://avatars0.githubusercontent.com/u/19560173?v=4","gravatar_id":"","url":"https://api.github.com/users/scilligence","html_url":"https://github.com/scilligence","followers_url":"https://api.github.com/users/scilligence/followers","following_url":"https://api.github.com/users/scilligence/following{/other_user}","gists_url":"https://api.github.com/users/scilligence/gists{/gist_id}","starred_url":"https://api.github.com/users/scilligence/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scilligence/subscriptions","organizations_url":"https://api.github.com/users/scilligence/orgs","repos_url":"https://api.github.com/users/scilligence/repos","events_url":"https://api.github.com/users/scilligence/events{/privacy}","received_events_url":"https://api.github.com/users/scilligence/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2018-08-13T14:12:59Z","updated_at":"2018-10-16T09:17:17Z","closed_at":"2018-10-16T09:17:17Z","author_association":"COLLABORATOR","body":"I create a short peptide AC\r\n![image](https://user-images.githubusercontent.com/3986896/44036576-050a238a-9f0a-11e8-810e-2b41ac6e644e.png)\r\nI then place a chem * monomer on the canvas and try to connect it to the peptide. \r\nI am asked whether I want to connect R1 or R2.\r\n![image](https://user-images.githubusercontent.com/3986896/44036731-6d730158-9f0a-11e8-8a65-dd9691533f03.png)\r\nA * CHEM monomer does not have any specified R groups, therefore any bond to it should be ambiguous and the HELM for this molecule should be:\r\n`CHEM1{*}|PEPTIDE1{A.C}$PEPTIDE1,CHEM1,2:R2-1:?$$$V2.0`\r\nThe webeditor will accept this HELM, but does not generate it. \r\n\r\nRNA and PEPTDIDE * monomers should have R1 and R2, so they can form part of the backbone of these polymers, but CHEM should not. \r\n"},"comment":{"url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor/issues/comments/430164045","html_url":"https://github.com/PistoiaHELM/HELMWebEditor/issues/213#issuecomment-430164045","issue_url":"https://api.github.com/repos/PistoiaHELM/HELMWebEditor/issues/213","id":430164045,"node_id":"MDEyOklzc3VlQ29tbWVudDQzMDE2NDA0NQ==","user":{"login":"ClairePA","id":3986896,"node_id":"MDQ6VXNlcjM5ODY4OTY=","avatar_url":"https://avatars0.githubusercontent.com/u/3986896?v=4","gravatar_id":"","url":"https://api.github.com/users/ClairePA","html_url":"https://github.com/ClairePA","followers_url":"https://api.github.com/users/ClairePA/followers","following_url":"https://api.github.com/users/ClairePA/following{/other_user}","gists_url":"https://api.github.com/users/ClairePA/gists{/gist_id}","starred_url":"https://api.github.com/users/ClairePA/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClairePA/subscriptions","organizations_url":"https://api.github.com/users/ClairePA/orgs","repos_url":"https://api.github.com/users/ClairePA/repos","events_url":"https://api.github.com/users/ClairePA/events{/privacy}","received_events_url":"https://api.github.com/users/ClairePA/received_events","type":"User","site_admin":false},"created_at":"2018-10-16T09:17:17Z","updated_at":"2018-10-16T09:17:17Z","author_association":"COLLABORATOR","body":"Retested and it looks OK. \r\nI see the problem with it recognising * as part of the backbone. Actually, since * represents a part of the structure that is unknown, it may be acceptable for it to be a new simple polymer strand. I think we should leave it as it is and see if there are major objections from users. \r\n"}}
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