{"action":"created","issue":{"url":"https://api.github.com/repos/choishingwan/PRSice/issues/69","repository_url":"https://api.github.com/repos/choishingwan/PRSice","labels_url":"https://api.github.com/repos/choishingwan/PRSice/issues/69/labels{/name}","comments_url":"https://api.github.com/repos/choishingwan/PRSice/issues/69/comments","events_url":"https://api.github.com/repos/choishingwan/PRSice/issues/69/events","html_url":"https://github.com/choishingwan/PRSice/issues/69","id":341994621,"node_id":"MDU6SXNzdWUzNDE5OTQ2MjE=","number":69,"title":"mismatched variants? #30 re-open issue","user":{"login":"JudGarcGonz","id":40833909,"node_id":"MDQ6VXNlcjQwODMzOTA5","avatar_url":"https://avatars3.githubusercontent.com/u/40833909?v=4","gravatar_id":"","url":"https://api.github.com/users/JudGarcGonz","html_url":"https://github.com/JudGarcGonz","followers_url":"https://api.github.com/users/JudGarcGonz/followers","following_url":"https://api.github.com/users/JudGarcGonz/following{/other_user}","gists_url":"https://api.github.com/users/JudGarcGonz/gists{/gist_id}","starred_url":"https://api.github.com/users/JudGarcGonz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JudGarcGonz/subscriptions","organizations_url":"https://api.github.com/users/JudGarcGonz/orgs","repos_url":"https://api.github.com/users/JudGarcGonz/repos","events_url":"https://api.github.com/users/JudGarcGonz/events{/privacy}","received_events_url":"https://api.github.com/users/JudGarcGonz/received_events","type":"User","site_admin":false},"labels":[{"id":418908652,"node_id":"MDU6TGFiZWw0MTg5MDg2NTI=","url":"https://api.github.com/repos/choishingwan/PRSice/labels/help%20wanted","name":"help wanted","color":"128A0C","default":true}],"state":"open","locked":false,"assignee":{"login":"choishingwan","id":1259746,"node_id":"MDQ6VXNlcjEyNTk3NDY=","avatar_url":"https://avatars2.githubusercontent.com/u/1259746?v=4","gravatar_id":"","url":"https://api.github.com/users/choishingwan","html_url":"https://github.com/choishingwan","followers_url":"https://api.github.com/users/choishingwan/followers","following_url":"https://api.github.com/users/choishingwan/following{/other_user}","gists_url":"https://api.github.com/users/choishingwan/gists{/gist_id}","starred_url":"https://api.github.com/users/choishingwan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/choishingwan/subscriptions","organizations_url":"https://api.github.com/users/choishingwan/orgs","repos_url":"https://api.github.com/users/choishingwan/repos","events_url":"https://api.github.com/users/choishingwan/events{/privacy}","received_events_url":"https://api.github.com/users/choishingwan/received_events","type":"User","site_admin":false},"assignees":[{"login":"choishingwan","id":1259746,"node_id":"MDQ6VXNlcjEyNTk3NDY=","avatar_url":"https://avatars2.githubusercontent.com/u/1259746?v=4","gravatar_id":"","url":"https://api.github.com/users/choishingwan","html_url":"https://github.com/choishingwan","followers_url":"https://api.github.com/users/choishingwan/followers","following_url":"https://api.github.com/users/choishingwan/following{/other_user}","gists_url":"https://api.github.com/users/choishingwan/gists{/gist_id}","starred_url":"https://api.github.com/users/choishingwan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/choishingwan/subscriptions","organizations_url":"https://api.github.com/users/choishingwan/orgs","repos_url":"https://api.github.com/users/choishingwan/repos","events_url":"https://api.github.com/users/choishingwan/events{/privacy}","received_events_url":"https://api.github.com/users/choishingwan/received_events","type":"User","site_admin":false}],"milestone":null,"comments":1,"created_at":"2018-07-17T16:30:48Z","updated_at":"2018-07-19T10:43:25Z","closed_at":null,"author_association":"NONE","body":"Following previous issue #30 \r\n\r\nI am using BGEN and I am having the same issue:\r\n\r\n6330995 variant(s) observed in base file, with:\r\n6330995 variant(s) not found in target file\r\n0 total variant(s) included from base file\r\nError: No valid variant remaining\r\n\r\nI've checked internally and I have matching rs numbers and positions. I downloaded PRSice the 21st May. So not sure whether you fixed this before such date?\r\n\r\nThanks!"},"comment":{"url":"https://api.github.com/repos/choishingwan/PRSice/issues/comments/406234398","html_url":"https://github.com/choishingwan/PRSice/issues/69#issuecomment-406234398","issue_url":"https://api.github.com/repos/choishingwan/PRSice/issues/69","id":406234398,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNjIzNDM5OA==","user":{"login":"JudGarcGonz","id":40833909,"node_id":"MDQ6VXNlcjQwODMzOTA5","avatar_url":"https://avatars3.githubusercontent.com/u/40833909?v=4","gravatar_id":"","url":"https://api.github.com/users/JudGarcGonz","html_url":"https://github.com/JudGarcGonz","followers_url":"https://api.github.com/users/JudGarcGonz/followers","following_url":"https://api.github.com/users/JudGarcGonz/following{/other_user}","gists_url":"https://api.github.com/users/JudGarcGonz/gists{/gist_id}","starred_url":"https://api.github.com/users/JudGarcGonz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JudGarcGonz/subscriptions","organizations_url":"https://api.github.com/users/JudGarcGonz/orgs","repos_url":"https://api.github.com/users/JudGarcGonz/repos","events_url":"https://api.github.com/users/JudGarcGonz/events{/privacy}","received_events_url":"https://api.github.com/users/JudGarcGonz/received_events","type":"User","site_admin":false},"created_at":"2018-07-19T10:43:25Z","updated_at":"2018-07-19T10:43:25Z","author_association":"NONE","body":"Hi Sam,\r\n\r\nIt works now. Thank you!!! One suggestion: It would be useful to add the run name to the PRSice.valid file: This way PRSice doesn't over-write when running different/multiple jobs - it would make things a bit easier to track or debug.\r\n\r\nCheers, all the best.\r\n\r\nJudit\r\n"}}
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