{"action":"created","issue":{"url":"https://api.github.com/repos/I2PC/scipion/issues/1542","repository_url":"https://api.github.com/repos/I2PC/scipion","labels_url":"https://api.github.com/repos/I2PC/scipion/issues/1542/labels{/name}","comments_url":"https://api.github.com/repos/I2PC/scipion/issues/1542/comments","events_url":"https://api.github.com/repos/I2PC/scipion/issues/1542/events","html_url":"https://github.com/I2PC/scipion/pull/1542","id":308166450,"number":1542,"title":"add relion extract movie ptcls","user":{"login":"azazellochg","id":6952870,"avatar_url":"https://avatars3.githubusercontent.com/u/6952870?v=4","gravatar_id":"","url":"https://api.github.com/users/azazellochg","html_url":"https://github.com/azazellochg","followers_url":"https://api.github.com/users/azazellochg/followers","following_url":"https://api.github.com/users/azazellochg/following{/other_user}","gists_url":"https://api.github.com/users/azazellochg/gists{/gist_id}","starred_url":"https://api.github.com/users/azazellochg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/azazellochg/subscriptions","organizations_url":"https://api.github.com/users/azazellochg/orgs","repos_url":"https://api.github.com/users/azazellochg/repos","events_url":"https://api.github.com/users/azazellochg/events{/privacy}","received_events_url":"https://api.github.com/users/azazellochg/received_events","type":"User","site_admin":false},"labels":[{"id":305352353,"url":"https://api.github.com/repos/I2PC/scipion/labels/to-review","name":"to-review","color":"e6e6e6","default":false}],"state":"open","locked":false,"assignee":{"login":"delarosatrevin","id":8441688,"avatar_url":"https://avatars0.githubusercontent.com/u/8441688?v=4","gravatar_id":"","url":"https://api.github.com/users/delarosatrevin","html_url":"https://github.com/delarosatrevin","followers_url":"https://api.github.com/users/delarosatrevin/followers","following_url":"https://api.github.com/users/delarosatrevin/following{/other_user}","gists_url":"https://api.github.com/users/delarosatrevin/gists{/gist_id}","starred_url":"https://api.github.com/users/delarosatrevin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/delarosatrevin/subscriptions","organizations_url":"https://api.github.com/users/delarosatrevin/orgs","repos_url":"https://api.github.com/users/delarosatrevin/repos","events_url":"https://api.github.com/users/delarosatrevin/events{/privacy}","received_events_url":"https://api.github.com/users/delarosatrevin/received_events","type":"User","site_admin":false},"assignees":[{"login":"delarosatrevin","id":8441688,"avatar_url":"https://avatars0.githubusercontent.com/u/8441688?v=4","gravatar_id":"","url":"https://api.github.com/users/delarosatrevin","html_url":"https://github.com/delarosatrevin","followers_url":"https://api.github.com/users/delarosatrevin/followers","following_url":"https://api.github.com/users/delarosatrevin/following{/other_user}","gists_url":"https://api.github.com/users/delarosatrevin/gists{/gist_id}","starred_url":"https://api.github.com/users/delarosatrevin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/delarosatrevin/subscriptions","organizations_url":"https://api.github.com/users/delarosatrevin/orgs","repos_url":"https://api.github.com/users/delarosatrevin/repos","events_url":"https://api.github.com/users/delarosatrevin/events{/privacy}","received_events_url":"https://api.github.com/users/delarosatrevin/received_events","type":"User","site_admin":false}],"milestone":null,"comments":13,"created_at":"2018-03-23T20:18:52Z","updated_at":"2018-04-27T12:30:47Z","closed_at":null,"author_association":"MEMBER","pull_request":{"url":"https://api.github.com/repos/I2PC/scipion/pulls/1542","html_url":"https://github.com/I2PC/scipion/pull/1542","diff_url":"https://github.com/I2PC/scipion/pull/1542.diff","patch_url":"https://github.com/I2PC/scipion/pull/1542.patch"},"body":"This closes #1382 \r\nIn this PR the new protocol +test for relion 2.0+ is added. I could not find in test datasets any particles that would correspond to test movies (from the import movie test), so an upload of new particle set is needed for new test to work: `data/tests/relion_tutorial/import/refine3d_case2/*` \r\n\r\nPS. Release-1.2 could be merged into devel before this PR."},"comment":{"url":"https://api.github.com/repos/I2PC/scipion/issues/comments/384955915","html_url":"https://github.com/I2PC/scipion/pull/1542#issuecomment-384955915","issue_url":"https://api.github.com/repos/I2PC/scipion/issues/1542","id":384955915,"user":{"login":"azazellochg","id":6952870,"avatar_url":"https://avatars3.githubusercontent.com/u/6952870?v=4","gravatar_id":"","url":"https://api.github.com/users/azazellochg","html_url":"https://github.com/azazellochg","followers_url":"https://api.github.com/users/azazellochg/followers","following_url":"https://api.github.com/users/azazellochg/following{/other_user}","gists_url":"https://api.github.com/users/azazellochg/gists{/gist_id}","starred_url":"https://api.github.com/users/azazellochg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/azazellochg/subscriptions","organizations_url":"https://api.github.com/users/azazellochg/orgs","repos_url":"https://api.github.com/users/azazellochg/repos","events_url":"https://api.github.com/users/azazellochg/events{/privacy}","received_events_url":"https://api.github.com/users/azazellochg/received_events","type":"User","site_admin":false},"created_at":"2018-04-27T12:30:47Z","updated_at":"2018-04-27T12:30:47Z","author_association":"MEMBER","body":"Ok, there are few things left to add:\r\n\r\n- [ ] rlnAverageNrOfFrames should be saved in output movie particle set (default=1 if running xmipp protocol)\r\n- [ ] the same number should be passed to star file in protocol_base [here](https://github.com/azazellochg/scipion/blob/az-relion-movie-ptcls/pyworkflow/em/packages/relion/protocol_base.py#L871)\r\n- [ ] check if the whole pipeline works if using xmipp"}}
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