{"action":"closed","issue":{"url":"https://api.github.com/repos/xie186/ViewBS/issues/18","repository_url":"https://api.github.com/repos/xie186/ViewBS","labels_url":"https://api.github.com/repos/xie186/ViewBS/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/xie186/ViewBS/issues/18/comments","events_url":"https://api.github.com/repos/xie186/ViewBS/issues/18/events","html_url":"https://github.com/xie186/ViewBS/issues/18","id":322185528,"node_id":"MDU6SXNzdWUzMjIxODU1Mjg=","number":18,"title":"MethHeatmap error","user":{"login":"ChengYunazhi","id":13846735,"node_id":"MDQ6VXNlcjEzODQ2NzM1","avatar_url":"https://avatars1.githubusercontent.com/u/13846735?v=4","gravatar_id":"","url":"https://api.github.com/users/ChengYunazhi","html_url":"https://github.com/ChengYunazhi","followers_url":"https://api.github.com/users/ChengYunazhi/followers","following_url":"https://api.github.com/users/ChengYunazhi/following{/other_user}","gists_url":"https://api.github.com/users/ChengYunazhi/gists{/gist_id}","starred_url":"https://api.github.com/users/ChengYunazhi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ChengYunazhi/subscriptions","organizations_url":"https://api.github.com/users/ChengYunazhi/orgs","repos_url":"https://api.github.com/users/ChengYunazhi/repos","events_url":"https://api.github.com/users/ChengYunazhi/events{/privacy}","received_events_url":"https://api.github.com/users/ChengYunazhi/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-05-11T06:43:38Z","updated_at":"2018-06-09T16:14:17Z","closed_at":"2018-06-09T16:14:17Z","author_association":"NONE","body":"Hi @xie186 ,\r\n\r\n    error was reported by ViewBS MethHeatmap subcommand: \r\n\r\n![qq 20180511144020](https://user-images.githubusercontent.com/13846735/39910344-7114c826-5529-11e8-97cc-9a713bca3d79.png)\r\n\r\n--------------------\r\n\r\n\r\nWhether to consider the gene encoding strand when calculating the average methylation level of a given gene?  \r\n\r\nIf gene coding in minus strand, and in this region all methylated C are in plus strand, methylation level for this gene is 0 or >0 ?\r\n\r\n\r\nThanks!\r\n\r\n Yuanzhi\r\n"}}
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