{"action":"created","issue":{"url":"https://api.github.com/repos/transcript/samsa2/issues/9","repository_url":"https://api.github.com/repos/transcript/samsa2","labels_url":"https://api.github.com/repos/transcript/samsa2/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/transcript/samsa2/issues/9/comments","events_url":"https://api.github.com/repos/transcript/samsa2/issues/9/events","html_url":"https://github.com/transcript/samsa2/issues/9","id":340285229,"node_id":"MDU6SXNzdWUzNDAyODUyMjk=","number":9,"title":"Code problems","user":{"login":"iquasere","id":16226371,"node_id":"MDQ6VXNlcjE2MjI2Mzcx","avatar_url":"https://avatars1.githubusercontent.com/u/16226371?v=4","gravatar_id":"","url":"https://api.github.com/users/iquasere","html_url":"https://github.com/iquasere","followers_url":"https://api.github.com/users/iquasere/followers","following_url":"https://api.github.com/users/iquasere/following{/other_user}","gists_url":"https://api.github.com/users/iquasere/gists{/gist_id}","starred_url":"https://api.github.com/users/iquasere/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/iquasere/subscriptions","organizations_url":"https://api.github.com/users/iquasere/orgs","repos_url":"https://api.github.com/users/iquasere/repos","events_url":"https://api.github.com/users/iquasere/events{/privacy}","received_events_url":"https://api.github.com/users/iquasere/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"transcript","id":7141846,"node_id":"MDQ6VXNlcjcxNDE4NDY=","avatar_url":"https://avatars1.githubusercontent.com/u/7141846?v=4","gravatar_id":"","url":"https://api.github.com/users/transcript","html_url":"https://github.com/transcript","followers_url":"https://api.github.com/users/transcript/followers","following_url":"https://api.github.com/users/transcript/following{/other_user}","gists_url":"https://api.github.com/users/transcript/gists{/gist_id}","starred_url":"https://api.github.com/users/transcript/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/transcript/subscriptions","organizations_url":"https://api.github.com/users/transcript/orgs","repos_url":"https://api.github.com/users/transcript/repos","events_url":"https://api.github.com/users/transcript/events{/privacy}","received_events_url":"https://api.github.com/users/transcript/received_events","type":"User","site_admin":false},"assignees":[{"login":"transcript","id":7141846,"node_id":"MDQ6VXNlcjcxNDE4NDY=","avatar_url":"https://avatars1.githubusercontent.com/u/7141846?v=4","gravatar_id":"","url":"https://api.github.com/users/transcript","html_url":"https://github.com/transcript","followers_url":"https://api.github.com/users/transcript/followers","following_url":"https://api.github.com/users/transcript/following{/other_user}","gists_url":"https://api.github.com/users/transcript/gists{/gist_id}","starred_url":"https://api.github.com/users/transcript/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/transcript/subscriptions","organizations_url":"https://api.github.com/users/transcript/orgs","repos_url":"https://api.github.com/users/transcript/repos","events_url":"https://api.github.com/users/transcript/events{/privacy}","received_events_url":"https://api.github.com/users/transcript/received_events","type":"User","site_admin":false}],"milestone":null,"comments":8,"created_at":"2018-07-11T15:07:52Z","updated_at":"2018-07-24T22:04:05Z","closed_at":null,"author_association":"NONE","body":"Greetings!\r\n\r\nI was trying to use SAMSA2, and running the master_script.bash, it fails at line 89 because of what i think is a typo: the \"##*/\" in \"out_name=`echo ${out_path##*/}`\". I tried editing that out and further problems arose because of file names (changed *.merged* to *merged.* and *.cleaned to *_cleaned). This edits allowed me to get to the python scripts, however, after identifying the genes, it fails to find their identifiers in the databases for retrieving functional and taxonomic information.\r\n\r\nI downloaded SAMSA2 from github, and installed everything with the supplied scripts from the tool. Am I using an older non-functional version of the tool?\r\n\r\nThank you for your attention"},"comment":{"url":"https://api.github.com/repos/transcript/samsa2/issues/comments/407567321","html_url":"https://github.com/transcript/samsa2/issues/9#issuecomment-407567321","issue_url":"https://api.github.com/repos/transcript/samsa2/issues/9","id":407567321,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzU2NzMyMQ==","user":{"login":"utpalh","id":11863170,"node_id":"MDQ6VXNlcjExODYzMTcw","avatar_url":"https://avatars2.githubusercontent.com/u/11863170?v=4","gravatar_id":"","url":"https://api.github.com/users/utpalh","html_url":"https://github.com/utpalh","followers_url":"https://api.github.com/users/utpalh/followers","following_url":"https://api.github.com/users/utpalh/following{/other_user}","gists_url":"https://api.github.com/users/utpalh/gists{/gist_id}","starred_url":"https://api.github.com/users/utpalh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/utpalh/subscriptions","organizations_url":"https://api.github.com/users/utpalh/orgs","repos_url":"https://api.github.com/users/utpalh/repos","events_url":"https://api.github.com/users/utpalh/events{/privacy}","received_events_url":"https://api.github.com/users/utpalh/received_events","type":"User","site_admin":false},"created_at":"2018-07-24T22:04:05Z","updated_at":"2018-07-24T22:04:05Z","author_association":"NONE","body":"Thanks Sam its working fine now"}}
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