{"action":"created","issue":{"url":"https://api.github.com/repos/statgen/pheweb/issues/114","repository_url":"https://api.github.com/repos/statgen/pheweb","labels_url":"https://api.github.com/repos/statgen/pheweb/issues/114/labels{/name}","comments_url":"https://api.github.com/repos/statgen/pheweb/issues/114/comments","events_url":"https://api.github.com/repos/statgen/pheweb/issues/114/events","html_url":"https://github.com/statgen/pheweb/issues/114","id":374516536,"node_id":"MDU6SXNzdWUzNzQ1MTY1MzY=","number":114,"title":"ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found","user":{"login":"jgrundstad","id":1865478,"node_id":"MDQ6VXNlcjE4NjU0Nzg=","avatar_url":"https://avatars3.githubusercontent.com/u/1865478?v=4","gravatar_id":"","url":"https://api.github.com/users/jgrundstad","html_url":"https://github.com/jgrundstad","followers_url":"https://api.github.com/users/jgrundstad/followers","following_url":"https://api.github.com/users/jgrundstad/following{/other_user}","gists_url":"https://api.github.com/users/jgrundstad/gists{/gist_id}","starred_url":"https://api.github.com/users/jgrundstad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jgrundstad/subscriptions","organizations_url":"https://api.github.com/users/jgrundstad/orgs","repos_url":"https://api.github.com/users/jgrundstad/repos","events_url":"https://api.github.com/users/jgrundstad/events{/privacy}","received_events_url":"https://api.github.com/users/jgrundstad/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-10-26T19:25:13Z","updated_at":"2018-10-26T20:33:52Z","closed_at":"2018-10-26T20:28:38Z","author_association":"NONE","body":"I'm attempting to process data for a test instance of pheweb, and get this exception at the `pheweb matrix` stage:\r\n\r\n```\r\n======= Exception ====\r\n/usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/load/cffi/_x.abi3.so)\r\n\r\n======= Traceback ====\r\nTraceback (most recent call last):\r\n  File \"/home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/command_line.py\", line 162, in main\r\n    run(sys.argv[1:])\r\n  File \"/home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/command_line.py\", line 156, in run\r\n    handlers[subcommand](argv[1:])\r\n  File \"/home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/command_line.py\", line 67, in f\r\n    module.run(argv)\r\n  File \"/home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/load/process_assoc_files.py\", line 45, in run\r\n    module = importlib.import_module('.{}'.format(script_parts[0]), __package__)\r\n  File \"/home/grundaj/envs/pheweb/lib/python3.6/importlib/__init__.py\", line 126, in import_module\r\n    return _bootstrap._gcd_import(name[level:], package, level)\r\n  File \"<frozen importlib._bootstrap>\", line 994, in _gcd_import\r\n  File \"<frozen importlib._bootstrap>\", line 971, in _find_and_load\r\n  File \"<frozen importlib._bootstrap>\", line 955, in _find_and_load_unlocked\r\n  File \"<frozen importlib._bootstrap>\", line 665, in _load_unlocked\r\n  File \"<frozen importlib._bootstrap_external>\", line 678, in exec_module\r\n  File \"<frozen importlib._bootstrap>\", line 219, in _call_with_frames_removed\r\n  File \"/home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/load/matrix.py\", line 4, in <module>\r\n    from .cffi._x import ffi, lib\r\nImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /home/grundaj/envs/pheweb/lib/python3.6/site-packages/pheweb/load/cffi/_x.abi3.so)\r\n```\r\n\r\nWe're currently (conservatively) running v4.8.5 on CentOS 7.4, is 3.4.20 a strict requirement?\r\n\r\nThanks!\r\n"},"comment":{"url":"https://api.github.com/repos/statgen/pheweb/issues/comments/433535230","html_url":"https://github.com/statgen/pheweb/issues/114#issuecomment-433535230","issue_url":"https://api.github.com/repos/statgen/pheweb/issues/114","id":433535230,"node_id":"MDEyOklzc3VlQ29tbWVudDQzMzUzNTIzMA==","user":{"login":"pjvandehaar","id":862089,"node_id":"MDQ6VXNlcjg2MjA4OQ==","avatar_url":"https://avatars0.githubusercontent.com/u/862089?v=4","gravatar_id":"","url":"https://api.github.com/users/pjvandehaar","html_url":"https://github.com/pjvandehaar","followers_url":"https://api.github.com/users/pjvandehaar/followers","following_url":"https://api.github.com/users/pjvandehaar/following{/other_user}","gists_url":"https://api.github.com/users/pjvandehaar/gists{/gist_id}","starred_url":"https://api.github.com/users/pjvandehaar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pjvandehaar/subscriptions","organizations_url":"https://api.github.com/users/pjvandehaar/orgs","repos_url":"https://api.github.com/users/pjvandehaar/repos","events_url":"https://api.github.com/users/pjvandehaar/events{/privacy}","received_events_url":"https://api.github.com/users/pjvandehaar/received_events","type":"User","site_admin":false},"created_at":"2018-10-26T20:33:52Z","updated_at":"2018-10-26T20:33:52Z","author_association":"CONTRIBUTOR","body":"Glad it worked for you.  Feel free to report any other issues."}}
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