{"action":"closed","issue":{"url":"https://api.github.com/repos/oncokb/oncokb-public/issues/76","repository_url":"https://api.github.com/repos/oncokb/oncokb-public","labels_url":"https://api.github.com/repos/oncokb/oncokb-public/issues/76/labels{/name}","comments_url":"https://api.github.com/repos/oncokb/oncokb-public/issues/76/comments","events_url":"https://api.github.com/repos/oncokb/oncokb-public/issues/76/events","html_url":"https://github.com/oncokb/oncokb-public/issues/76","id":207846146,"node_id":"MDU6SXNzdWUyMDc4NDYxNDY=","number":76,"title":"Some data in the mutation mapper have no mapping record in the table","user":{"login":"JiaoJiao123","id":13951023,"node_id":"MDQ6VXNlcjEzOTUxMDIz","avatar_url":"https://avatars2.githubusercontent.com/u/13951023?v=4","gravatar_id":"","url":"https://api.github.com/users/JiaoJiao123","html_url":"https://github.com/JiaoJiao123","followers_url":"https://api.github.com/users/JiaoJiao123/followers","following_url":"https://api.github.com/users/JiaoJiao123/following{/other_user}","gists_url":"https://api.github.com/users/JiaoJiao123/gists{/gist_id}","starred_url":"https://api.github.com/users/JiaoJiao123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JiaoJiao123/subscriptions","organizations_url":"https://api.github.com/users/JiaoJiao123/orgs","repos_url":"https://api.github.com/users/JiaoJiao123/repos","events_url":"https://api.github.com/users/JiaoJiao123/events{/privacy}","received_events_url":"https://api.github.com/users/JiaoJiao123/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"JiaoJiao123","id":13951023,"node_id":"MDQ6VXNlcjEzOTUxMDIz","avatar_url":"https://avatars2.githubusercontent.com/u/13951023?v=4","gravatar_id":"","url":"https://api.github.com/users/JiaoJiao123","html_url":"https://github.com/JiaoJiao123","followers_url":"https://api.github.com/users/JiaoJiao123/followers","following_url":"https://api.github.com/users/JiaoJiao123/following{/other_user}","gists_url":"https://api.github.com/users/JiaoJiao123/gists{/gist_id}","starred_url":"https://api.github.com/users/JiaoJiao123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JiaoJiao123/subscriptions","organizations_url":"https://api.github.com/users/JiaoJiao123/orgs","repos_url":"https://api.github.com/users/JiaoJiao123/repos","events_url":"https://api.github.com/users/JiaoJiao123/events{/privacy}","received_events_url":"https://api.github.com/users/JiaoJiao123/received_events","type":"User","site_admin":false},"assignees":[{"login":"JiaoJiao123","id":13951023,"node_id":"MDQ6VXNlcjEzOTUxMDIz","avatar_url":"https://avatars2.githubusercontent.com/u/13951023?v=4","gravatar_id":"","url":"https://api.github.com/users/JiaoJiao123","html_url":"https://github.com/JiaoJiao123","followers_url":"https://api.github.com/users/JiaoJiao123/followers","following_url":"https://api.github.com/users/JiaoJiao123/following{/other_user}","gists_url":"https://api.github.com/users/JiaoJiao123/gists{/gist_id}","starred_url":"https://api.github.com/users/JiaoJiao123/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JiaoJiao123/subscriptions","organizations_url":"https://api.github.com/users/JiaoJiao123/orgs","repos_url":"https://api.github.com/users/JiaoJiao123/repos","events_url":"https://api.github.com/users/JiaoJiao123/events{/privacy}","received_events_url":"https://api.github.com/users/JiaoJiao123/received_events","type":"User","site_admin":false}],"milestone":null,"comments":2,"created_at":"2017-02-15T16:00:44Z","updated_at":"2018-06-22T19:42:38Z","closed_at":"2018-06-22T19:42:38Z","author_association":"COLLABORATOR","body":"http://oncokb.org/#/gene/BRCA2\r\nIn the mutation lollipop, click on L1491Kfs*12, and the mutation table updates but shows zero rows.  But, if you go to this MSK sample in GENIE:  http://www.cbioportal.org/genie/case.do?cancer_study_id=genie_public&sample_id=GENIE-MSK-P-0000597-T01-IM3, you can see that BRCA2 L1491Kfs*12 is listed as tier 2 in OncoKB.\r\n\r\nSolutions: L1491Kfs*12 should be linked to truncating mutations and Oncogenenic mutations. We need to implement some logic in the frontend to link to generic mutation entries. Similar rules should be set for other type of variants like DNA binding domain missense mutations, DNA binding domain insertions/deletions."}}
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