{"action":"created","issue":{"url":"https://api.github.com/repos/jdereus/labman/issues/273","repository_url":"https://api.github.com/repos/jdereus/labman","labels_url":"https://api.github.com/repos/jdereus/labman/issues/273/labels{/name}","comments_url":"https://api.github.com/repos/jdereus/labman/issues/273/comments","events_url":"https://api.github.com/repos/jdereus/labman/issues/273/events","html_url":"https://github.com/jdereus/labman/issues/273","id":345389864,"node_id":"MDU6SXNzdWUzNDUzODk4NjQ=","number":273,"title":"Sample plating must take in tube ids (anonymized_name) not sample_id","user":{"login":"AmandaBirmingham","id":10677935,"node_id":"MDQ6VXNlcjEwNjc3OTM1","avatar_url":"https://avatars1.githubusercontent.com/u/10677935?v=4","gravatar_id":"","url":"https://api.github.com/users/AmandaBirmingham","html_url":"https://github.com/AmandaBirmingham","followers_url":"https://api.github.com/users/AmandaBirmingham/followers","following_url":"https://api.github.com/users/AmandaBirmingham/following{/other_user}","gists_url":"https://api.github.com/users/AmandaBirmingham/gists{/gist_id}","starred_url":"https://api.github.com/users/AmandaBirmingham/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AmandaBirmingham/subscriptions","organizations_url":"https://api.github.com/users/AmandaBirmingham/orgs","repos_url":"https://api.github.com/users/AmandaBirmingham/repos","events_url":"https://api.github.com/users/AmandaBirmingham/events{/privacy}","received_events_url":"https://api.github.com/users/AmandaBirmingham/received_events","type":"User","site_admin":false},"labels":[{"id":604028833,"node_id":"MDU6TGFiZWw2MDQwMjg4MzM=","url":"https://api.github.com/repos/jdereus/labman/labels/bug","name":"bug","color":"ee0701","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-27T23:02:23Z","updated_at":"2018-07-28T12:34:13Z","closed_at":null,"author_association":"COLLABORATOR","body":"Labman expects the wet lab to put values from qiita.study_sample.sample_id into the platemap, but that the wet lab does not actually have those identifiers.  Instead, they have tube identifiers which (usually) are found in the anonymized_name column of the sample metadata.\r\n\r\nNB: We need to determine which of the labman outputs need to contain anonymized_name and which need to contain sample_id before attempting to fix this issue."},"comment":{"url":"https://api.github.com/repos/jdereus/labman/issues/comments/408605128","html_url":"https://github.com/jdereus/labman/issues/273#issuecomment-408605128","issue_url":"https://api.github.com/repos/jdereus/labman/issues/273","id":408605128,"node_id":"MDEyOklzc3VlQ29tbWVudDQwODYwNTEyOA==","user":{"login":"antgonza","id":2014559,"node_id":"MDQ6VXNlcjIwMTQ1NTk=","avatar_url":"https://avatars2.githubusercontent.com/u/2014559?v=4","gravatar_id":"","url":"https://api.github.com/users/antgonza","html_url":"https://github.com/antgonza","followers_url":"https://api.github.com/users/antgonza/followers","following_url":"https://api.github.com/users/antgonza/following{/other_user}","gists_url":"https://api.github.com/users/antgonza/gists{/gist_id}","starred_url":"https://api.github.com/users/antgonza/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/antgonza/subscriptions","organizations_url":"https://api.github.com/users/antgonza/orgs","repos_url":"https://api.github.com/users/antgonza/repos","events_url":"https://api.github.com/users/antgonza/events{/privacy}","received_events_url":"https://api.github.com/users/antgonza/received_events","type":"User","site_admin":false},"created_at":"2018-07-28T12:34:13Z","updated_at":"2018-07-28T12:34:13Z","author_association":"COLLABORATOR","body":"Perhaps the issue here is that the qiita user creates a study, adds their sample names, then we assign tube ids, which then are not sample_ids. However, these are the main ids for the web lab. \r\n\r\ncc-ing @ackermag"}}
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