{"push_id":3120793786,"size":154,"distinct_size":154,"ref":"refs/heads/master","head":"11e3528a70880b459070c1897e7d322639d07a88","before":"944e71b2edb94648734ae592783ac82a990db8d8","commits":[{"sha":"8ca575ea56a09209d75ac123d61703ca50c703d7","author":{"name":"sw1","email":"aa154de1668427b1f3cb3aecf1e9848eb52b6464@users.noreply.github.com"},"message":"Update thetaPosterior.R\n\nNote that I'm unsure about (3).\r\n\r\n(1) For lhoodcpp, it's lhoodcpp(SEXP eta, SEXP beta,\r\nSEXP doc_ct, SEXP mu, SEXP siginv), so nothing for Ndoc. If you dig further in the function, it actually calculates this:\r\n\r\ndouble ndoc = sum(doc_cts);\r\n\r\n(2) Also, doc.ct should be doc_ct.\r\n\r\n(3) Mu[,i] returns an error if there was no prevalence information in the model -- i.e., mu is a column vector. I'm assuming for models with no metadata, the same mu vector should be passed every iteration of i. I guess it just needs an if statement then? My quick fix works, but I'm unsure if it accomplishes what you wanted, and I haven't gone through the optimization routine to verify.\r\n\r\n(4) For newton gradcpp(eta, doc.ct, mu, siginv, beta), beta is in the wrong place.\r\n\r\n(5) For newton lhoodcpp(eta, doc.ct, mu, siginv, beta), beta is in the wrong place like above.\r\n\r\n(6) Newton also has doc.ct where it should be doc_ct.","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/8ca575ea56a09209d75ac123d61703ca50c703d7"},{"sha":"88c9adf618a1d6c4a297d51fd4a6bba7f8a234f0","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge branch 'master' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/88c9adf618a1d6c4a297d51fd4a6bba7f8a234f0"},{"sha":"18f9d705f5dfc380e91f76fc189a43b54ec35ed2","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@soc-macbms4.princeton.edu"},"message":"Merge branch 'master' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/18f9d705f5dfc380e91f76fc189a43b54ec35ed2"},{"sha":"51878d166c70c6522c4c9e6c3fc8b77142265ab0","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@soc-macbms4.princeton.edu"},"message":"Merge branch 'master' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/51878d166c70c6522c4c9e6c3fc8b77142265ab0"},{"sha":"120e692879499414c3112965d3b8c20ca8c6563a","author":{"name":"Vincent Arel-Bundock","email":"f484e7606851f4e4bc810cfa0b350fcd7ea18537@umich.edu"},"message":"parallel searchK","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/120e692879499414c3112965d3b8c20ca8c6563a"},{"sha":"295b5b027bfb3f65943f6bd48ecaeeb40a0b1054","author":{"name":"Vincent Arel-Bundock","email":"f484e7606851f4e4bc810cfa0b350fcd7ea18537@umich.edu"},"message":"searchK parallel: ran roxygen to produce docs","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/295b5b027bfb3f65943f6bd48ecaeeb40a0b1054"},{"sha":"434e447b266c2799203553bc67ded3ad5445ea53","author":{"name":"Vincent Arel-Bundock","email":"f484e7606851f4e4bc810cfa0b350fcd7ea18537@umich.edu"},"message":"parallel searchK: cleanup","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/434e447b266c2799203553bc67ded3ad5445ea53"},{"sha":"9f1ced4953cd8fea795987ab3ce5e64b90979d57","author":{"name":"Chris Baker","email":"5174568f63b0f32bc3d4979be940beae60d15d11@gmail.com"},"message":"Subset parameters list using raw iterator, not topic name","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/9f1ced4953cd8fea795987ab3ce5e64b90979d57"},{"sha":"d86f607dedd21965370c21a1f6ac8bc93618d224","author":{"name":"jrnold","email":"396736344a8e338f964d00902421e25daa8952fc@gmail.com"},"message":"Randomize assignment and order of memoization groups\n\n- when ngroups > 1, randomly assign indices to groups so that the batches are representative even if the documents are in a non-random order\n- in memoization, randomly order the batches in each pass (as in Huges and Sudderth, http://cs.brown.edu/~sudderth/papers/nips13dpMemoized.pdf, p. 4.","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/d86f607dedd21965370c21a1f6ac8bc93618d224"},{"sha":"035d74f56aceda8dae761b622812a5abd02e8281","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge remote-tracking branch 'origin/development' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/035d74f56aceda8dae761b622812a5abd02e8281"},{"sha":"cf53aa9f00e7ba1e727ded2a1391f94795896e29","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Changes to registration","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/cf53aa9f00e7ba1e727ded2a1391f94795896e29"},{"sha":"607de9af16e550ba1dd15897a3b8041cd00b7115","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Speeding up K=0\n\nWith reference to #72 I swapped out the full PCA init with one based on\nrandom projections.  It will produce different answers than before\n(even with the same seed) because it burns a bunch of random numbers,\nbut its pretty tight all things considered.","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/607de9af16e550ba1dd15897a3b8041cd00b7115"},{"sha":"2ee09548b64261051d1154bdfd8c6078b98c6fb8","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"More on K=0\n\nNow addressing the issue in #71\n\nStill need to do testing.","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/2ee09548b64261051d1154bdfd8c6078b98c6fb8"},{"sha":"93a7b02b863620150d845fdfa8bc9e6c526343e4","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge pull request #88 from jrnold/randomized-groups\n\nRandomize assignment and order of memoization groups","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/93a7b02b863620150d845fdfa8bc9e6c526343e4"},{"sha":"413791d97424d2ef150bd43c3d14d9b2bae07419","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge branch 'master' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/413791d97424d2ef150bd43c3d14d9b2bae07419"},{"sha":"7d0d833e876f234215a226f362c99ea9cb6c07ce","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Updating news and documentation for K=0","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/7d0d833e876f234215a226f362c99ea9cb6c07ce"},{"sha":"3bc27e2be557c89c392310fff3580ab6885045da","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Switch argument handling for recover EG\n\nClose #87","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/3bc27e2be557c89c392310fff3580ab6885045da"},{"sha":"4381e2b90fef3a838b8097e92ac2812389269d63","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge branch 'master' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/4381e2b90fef3a838b8097e92ac2812389269d63"},{"sha":"21cc343ef304550e0d2da01e6b7b9f874b6408fd","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge pull request #86 from crew102/fix-est-effect-sum\n\nSubset parameters list using raw iterator, not topic name","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/21cc343ef304550e0d2da01e6b7b9f874b6408fd"},{"sha":"ff505863891b237089edf2edec4397be728332cd","author":{"name":"Brandon Stewart","email":"899c09ab6fb099782d94bca00eb3ada3e5505dbb@princeton.edu"},"message":"Merge remote-tracking branch 'origin/development' into development","distinct":true,"url":"https://api.github.com/repos/kbenoit/stm/commits/ff505863891b237089edf2edec4397be728332cd"}]}
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