{"action":"closed","issue":{"url":"https://api.github.com/repos/sjmgarnier/viridis/issues/57","repository_url":"https://api.github.com/repos/sjmgarnier/viridis","labels_url":"https://api.github.com/repos/sjmgarnier/viridis/issues/57/labels{/name}","comments_url":"https://api.github.com/repos/sjmgarnier/viridis/issues/57/comments","events_url":"https://api.github.com/repos/sjmgarnier/viridis/issues/57/events","html_url":"https://github.com/sjmgarnier/viridis/issues/57","id":314038067,"number":57,"title":"Error : unable to load R code in package ‘viridis’","user":{"login":"eoli3n","id":14223657,"avatar_url":"https://avatars0.githubusercontent.com/u/14223657?v=4","gravatar_id":"","url":"https://api.github.com/users/eoli3n","html_url":"https://github.com/eoli3n","followers_url":"https://api.github.com/users/eoli3n/followers","following_url":"https://api.github.com/users/eoli3n/following{/other_user}","gists_url":"https://api.github.com/users/eoli3n/gists{/gist_id}","starred_url":"https://api.github.com/users/eoli3n/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/eoli3n/subscriptions","organizations_url":"https://api.github.com/users/eoli3n/orgs","repos_url":"https://api.github.com/users/eoli3n/repos","events_url":"https://api.github.com/users/eoli3n/events{/privacy}","received_events_url":"https://api.github.com/users/eoli3n/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":7,"created_at":"2018-04-13T09:39:55Z","updated_at":"2018-04-16T11:41:36Z","closed_at":"2018-04-16T11:41:36Z","author_association":"NONE","body":"I can't install DESeq2 because viridis deps fails installing.\r\n\r\n```\r\n> source(\"https://bioconductor.org/biocLite.R\")\r\nBioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help\r\n```\r\n```\r\n> biocLite(\"DESeq2\")\r\nBioC_mirror: https://bioconductor.org\r\nUsing Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.4 (2018-03-15).\r\nInstalling package(s) ‘DESeq2’\r\nalso installing the dependencies ‘viridis’, ‘Hmisc’\r\n\r\nessai de l'URL 'https://cloud.r-project.org/src/contrib/viridis_0.5.1.tar.gz'\r\nContent type 'application/x-gzip' length 1906320 bytes (1.8 MB)\r\n==================================================\r\ndownloaded 1.8 MB\r\n\r\nessai de l'URL 'https://cloud.r-project.org/src/contrib/Hmisc_4.1-1.tar.gz'\r\nContent type 'application/x-gzip' length 711786 bytes (695 KB)\r\n==================================================\r\ndownloaded 695 KB\r\n\r\nessai de l'URL 'https://bioconductor.org/packages/3.6/bioc/src/contrib/DESeq2_1.18.1.tar.gz'\r\nContent type 'application/x-gzip' length 2139692 bytes (2.0 MB)\r\n==================================================\r\ndownloaded 2.0 MB\r\n\r\n* installing *source* package ‘viridis’ ...\r\n** package ‘viridis’ correctement décompressé et sommes MD5 vérifiées\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\nError : 'viridis.map' is not an exported object from 'namespace:viridisLite'\r\nError : unable to load R code in package ‘viridis’\r\nERROR: lazy loading failed for package ‘viridis’\r\n* removing ‘/net/apps/R-packages/viridis’\r\nERROR: dependency ‘viridis’ is not available for package ‘Hmisc’\r\n* removing ‘/net/apps/R-packages/Hmisc’\r\nERROR: dependency ‘Hmisc’ is not available for package ‘DESeq2’\r\n* removing ‘/net/apps/R-packages/DESeq2’\r\n\r\nThe downloaded source packages are in\r\n\t‘/tmp/RtmpqerE0F/downloaded_packages’\r\nWarning messages:\r\n1: In install.packages(pkgs = doing, lib = lib, ...) :\r\n  installation of package ‘viridis’ had non-zero exit status\r\n2: In install.packages(pkgs = doing, lib = lib, ...) :\r\n  installation of package ‘Hmisc’ had non-zero exit status\r\n3: In install.packages(pkgs = doing, lib = lib, ...) :\r\n  installation of package ‘DESeq2’ had non-zero exit status\r\n```\r\n```\r\n> install.packages(\"viridisLite\")\r\nInstallation du package dans ‘/net/apps/R-packages’\r\n(car ‘lib’ n'est pas spécifié)\r\nessai de l'URL 'https://cloud.r-project.org/src/contrib/viridisLite_0.3.0.tar.gz'\r\nContent type 'application/x-gzip' length 44019 bytes (42 KB)\r\n==================================================\r\ndownloaded 42 KB\r\n\r\n* installing *source* package ‘viridisLite’ ...\r\n** package ‘viridisLite’ correctement décompressé et sommes MD5 vérifiées\r\n** R\r\n** data\r\n*** moving datasets to lazyload DB\r\n** preparing package for lazy loading\r\n** help\r\n*** installing help indices\r\n*** copying figures\r\n** building package indices\r\n** testing if installed package can be loaded\r\n* DONE (viridisLite)\r\n\r\nLes packages source téléchargés sont dans\r\n\t‘/tmp/RtmpqerE0F/downloaded_packages’\r\n```\r\n```\r\n> install.packages(\"viridis\")\r\nInstallation du package dans ‘/net/apps/R-packages’\r\n(car ‘lib’ n'est pas spécifié)\r\nessai de l'URL 'https://cloud.r-project.org/src/contrib/viridis_0.5.1.tar.gz'\r\nContent type 'application/x-gzip' length 1906320 bytes (1.8 MB)\r\n==================================================\r\ndownloaded 1.8 MB\r\n\r\n* installing *source* package ‘viridis’ ...\r\n** package ‘viridis’ correctement décompressé et sommes MD5 vérifiées\r\n** R\r\n** inst\r\n** preparing package for lazy loading\r\nError : 'viridis.map' is not an exported object from 'namespace:viridisLite'\r\nError : unable to load R code in package ‘viridis’\r\nERROR: lazy loading failed for package ‘viridis’\r\n* removing ‘/net/apps/R-packages/viridis’\r\n\r\nLes packages source téléchargés sont dans\r\n\t‘/tmp/RtmpqerE0F/downloaded_packages’\r\nWarning message:\r\nIn install.packages(\"viridis\") :\r\n  l'installation du package ‘viridis’ a eu un statut de sortie non nul\r\n```"}}
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