{"action":"created","comment":{"url":"https://api.github.com/repos/mantidproject/mantid/pulls/comments/232652298","pull_request_review_id":173893166,"id":232652298,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIzMjY1MjI5OA==","diff_hunk":"@@ -0,0 +1,174 @@\n+.. algorithm::\n+\n+.. summary::\n+\n+.. relatedalgorithms::\n+\n+.. properties::\n+\n+Description\n+-----------\n+\n+When interacting with the :ref:`Muon_Analysis-ref` interface, operations such as detector grouping, group and pair asymmetry are performed on data. As part of the workflow, several \"pre-processing\" steps are also necessary; such as rebinning and cropping the data, applying dead time corrections, and shifting the time axis by a fixed amount (sometimes referred to as \"first good data\").\n+\n+This algorithm intends to capture the common pre-processing steps, which are not muon physics specific concepts, and apply them all at once to produce data which is ready for the muon-specific operations. This way, scripting the workflows of the :ref:`Muon_Analysis-ref` interface is much more intuitive and simple.\n+\n+Analysis\n+########\n+\n+As indicated in the input variable names to this algorithm; there are four distinct operations applied to the input data. In order of application these are;\n+\n+#. Apply dead time correction through the **DeadTimeTable** input.\n+#. Apply a time offset to the time axis through the **TimeOffset** input, which may be positive or negative.\n+#. Apply a cropping to the upper (lower) ends of the time axis via the **TimeMax** (**TimeMin**) input.\n+#. Finally, apply a rebinning via **RebinArgs**, using the same syntax as in :ref:`algm-Rebin`.\n+\n+The **InputWorkspace** can be a single workspace object, and multi period data is supported by supplying a *WorkspaceGroup* as the input workspace, where each workspace within the group represents a single period.\n+\n+The **OutputWorkspace** is always a *Workspace Group*; for single period data the group only contains a single workspace. The reason for this is so that the muon algorithms **TODO : Fill in** can expect a consistent input between single and multi period data, and where single period data is just a limiting case of multi period data.","path":"docs/source/algorithms/MuonPreProcess-v1.rst","position":28,"original_position":28,"commit_id":"40c9cb329ba6f5d0b7e544166a1c2958434b293e","original_commit_id":"40c9cb329ba6f5d0b7e544166a1c2958434b293e","user":{"login":"AnthonyLim23","id":25006392,"node_id":"MDQ6VXNlcjI1MDA2Mzky","avatar_url":"https://avatars3.githubusercontent.com/u/25006392?v=4","gravatar_id":"","url":"https://api.github.com/users/AnthonyLim23","html_url":"https://github.com/AnthonyLim23","followers_url":"https://api.github.com/users/AnthonyLim23/followers","following_url":"https://api.github.com/users/AnthonyLim23/following{/other_user}","gists_url":"https://api.github.com/users/AnthonyLim23/gists{/gist_id}","starred_url":"https://api.github.com/users/AnthonyLim23/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AnthonyLim23/subscriptions","organizations_url":"https://api.github.com/users/AnthonyLim23/orgs","repos_url":"https://api.github.com/users/AnthonyLim23/repos","events_url":"https://api.github.com/users/AnthonyLim23/events{/privacy}","received_events_url":"https://api.github.com/users/AnthonyLim23/received_events","type":"User","site_admin":false},"body":"I found a to do","created_at":"2018-11-12T13:15:36Z","updated_at":"2018-11-12T13:15:37Z","html_url":"https://github.com/mantidproject/mantid/pull/23678#discussion_r232652298","pull_request_url":"https://api.github.com/repos/mantidproject/mantid/pulls/23678","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/mantidproject/mantid/pulls/comments/232652298"},"html":{"href":"https://github.com/mantidproject/mantid/pull/23678#discussion_r232652298"},"pull_request":{"href":"https://api.github.com/repos/mantidproject/mantid/pulls/23678"}}},"pull_request":{"url":"https://api.github.com/repos/mantidproject/mantid/pulls/23678","id":219629819,"node_id":"MDExOlB1bGxSZXF1ZXN0MjE5NjI5ODE5","html_url":"https://github.com/mantidproject/mantid/pull/23678","diff_url":"https://github.com/mantidproject/mantid/pull/23678.diff","patch_url":"https://github.com/mantidproject/mantid/pull/23678.patch","issue_url":"https://api.github.com/repos/mantidproject/mantid/issues/23678","number":23678,"state":"open","locked":false,"title":"Muon - Algorithm; MuonPreProcess","user":{"login":"TWJubb","id":33163693,"node_id":"MDQ6VXNlcjMzMTYzNjkz","avatar_url":"https://avatars0.githubusercontent.com/u/33163693?v=4","gravatar_id":"","url":"https://api.github.com/users/TWJubb","html_url":"https://github.com/TWJubb","followers_url":"https://api.github.com/users/TWJubb/followers","following_url":"https://api.github.com/users/TWJubb/following{/other_user}","gists_url":"https://api.github.com/users/TWJubb/gists{/gist_id}","starred_url":"https://api.github.com/users/TWJubb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TWJubb/subscriptions","organizations_url":"https://api.github.com/users/TWJubb/orgs","repos_url":"https://api.github.com/users/TWJubb/repos","events_url":"https://api.github.com/users/TWJubb/events{/privacy}","received_events_url":"https://api.github.com/users/TWJubb/received_events","type":"User","site_admin":false},"body":"Refs #23642\r\n\r\nRequires #23677 to be merged.\r\n\r\n### Summary\r\n\r\nThis PR introduces a new algorithm `MuonPreProcess` which is one of a set of four algorithms intended to break up the large `MuonProcess` algorithm which is not fit for purpose with the user requirements of the new muon interface (it is too large and does not allow easy or intuitive scripting of the user workflows).\r\n\r\nThis algorithm encapsulates all the \"pre-processing\" steps for a muon  group or pair related calculation. Thus it includes any common analysis steps which are not speficially muon related, but are used together in most muon workflows. These steps are;\r\n\r\n- Rebinning.\r\n- Cropping via a `first good data` value.\r\n- Shifting the x-axis (time) via a `time zero` value.\r\n- Apply a dead time correction via a `TableWorkspace`.\r\n\r\nThis allows the muon-specific logic to be distinct and captured in their own algorithms. This will make the use of algorithms by users (a more advanced usage of Mantid), both intuitive and easy after a little training. Then, users can replicate the functionality of their interface in the Python scripting window if they require more flexibility than the interface provides (thus fulfilling one of the primary user requirements).\r\n\r\n![muonpreprocess](https://user-images.githubusercontent.com/33163693/46347064-25da3a00-c642-11e8-93e5-3afaa7062ba7.png)\r\n\r\n### Unit Tests\r\n\r\nThe `MuonPreProcess` algorithm is intended to be run before the grouping/pairing algorithms. Part of its intended purpose is to carry out certain checks and put the workspace in a consistent format as expected by the grouping/pairing algorithms.\r\n\r\nThis prevents duplication of code, as the grouping algorithms are not expected to perform the same level of sanity checks. However this means that there should be a relatively higher number of tests on this algorithm.\r\n\r\n### TODO\r\n\r\n- ~As per instruction; unit tests have not been written yet, to focus on the functionality.~\r\n- ~The documentation page for the algorithm.~\r\n\r\n----------------\r\n\r\nDoes everything look good? Mark the review as **Approve**. A member of `@mantidproject/gatekeepers` will take care of it.\r\n\r\n","created_at":"2018-10-02T08:55:55Z","updated_at":"2018-11-12T13:15:37Z","closed_at":null,"merged_at":null,"merge_commit_sha":"a4a2eb30f5e6c1ce888895fd0ecbd66b62e4b846","assignee":{"login":"AnthonyLim23","id":25006392,"node_id":"MDQ6VXNlcjI1MDA2Mzky","avatar_url":"https://avatars3.githubusercontent.com/u/25006392?v=4","gravatar_id":"","url":"https://api.github.com/users/AnthonyLim23","html_url":"https://github.com/AnthonyLim23","followers_url":"https://api.github.com/users/AnthonyLim23/followers","following_url":"https://api.github.com/users/AnthonyLim23/following{/other_user}","gists_url":"https://api.github.com/users/AnthonyLim23/gists{/gist_id}","starred_url":"https://api.github.com/users/AnthonyLim23/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AnthonyLim23/subscriptions","organizations_url":"https://api.github.com/users/AnthonyLim23/orgs","repos_url":"https://api.github.com/users/AnthonyLim23/repos","events_url":"https://api.github.com/users/AnthonyLim23/events{/privacy}","received_events_url":"https://api.github.com/users/AnthonyLim23/received_events","type":"User","site_admin":false},"assignees":[{"login":"AnthonyLim23","id":25006392,"node_id":"MDQ6VXNlcjI1MDA2Mzky","avatar_url":"https://avatars3.githubusercontent.com/u/25006392?v=4","gravatar_id":"","url":"https://api.github.com/users/AnthonyLim23","html_url":"https://github.com/AnthonyLim23","followers_url":"https://api.github.com/users/AnthonyLim23/followers","following_url":"https://api.github.com/users/AnthonyLim23/following{/other_user}","gists_url":"https://api.github.com/users/AnthonyLim23/gists{/gist_id}","starred_url":"https://api.github.com/users/AnthonyLim23/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AnthonyLim23/subscriptions","organizations_url":"https://api.github.com/users/AnthonyLim23/orgs","repos_url":"https://api.github.com/users/AnthonyLim23/repos","events_url":"https://api.github.com/users/AnthonyLim23/events{/privacy}","received_events_url":"https://api.github.com/users/AnthonyLim23/received_events","type":"User","site_admin":false},{"login":"Mantid-Matthew","id":32058966,"node_id":"MDQ6VXNlcjMyMDU4OTY2","avatar_url":"https://avatars1.githubusercontent.com/u/32058966?v=4","gravatar_id":"","url":"https://api.github.com/users/Mantid-Matthew","html_url":"https://github.com/Mantid-Matthew","followers_url":"https://api.github.com/users/Mantid-Matthew/followers","following_url":"https://api.github.com/users/Mantid-Matthew/following{/other_user}","gists_url":"https://api.github.com/users/Mantid-Matthew/gists{/gist_id}","starred_url":"https://api.github.com/users/Mantid-Matthew/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Mantid-Matthew/subscriptions","organizations_url":"https://api.github.com/users/Mantid-Matthew/orgs","repos_url":"https://api.github.com/users/Mantid-Matthew/repos","events_url":"https://api.github.com/users/Mantid-Matthew/events{/privacy}","received_events_url":"https://api.github.com/users/Mantid-Matthew/received_events","type":"User","site_admin":false},{"login":"TWJubb","id":33163693,"node_id":"MDQ6VXNlcjMzMTYzNjkz","avatar_url":"https://avatars0.githubusercontent.com/u/33163693?v=4","gravatar_id":"","url":"https://api.github.com/users/TWJubb","html_url":"https://github.com/TWJubb","followers_url":"https://api.github.com/users/TWJubb/followers","following_url":"https://api.github.com/users/TWJubb/following{/other_user}","gists_url":"https://api.github.com/users/TWJubb/gists{/gist_id}","starred_url":"https://api.github.com/users/TWJubb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TWJubb/subscriptions","organizations_url":"https://api.github.com/users/TWJubb/orgs","repos_url":"https://api.github.com/users/TWJubb/repos","events_url":"https://api.github.com/users/TWJubb/events{/privacy}","received_events_url":"https://api.github.com/users/TWJubb/received_events","type":"User","site_admin":false}],"requested_reviewers":[],"requested_teams":[],"labels":[{"id":172781446,"node_id":"MDU6TGFiZWwxNzI3ODE0NDY=","url":"https://api.github.com/repos/mantidproject/mantid/labels/Component:%20Muon","name":"Component: 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