{"action":"created","issue":{"url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/issues/89","repository_url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils","labels_url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/issues/89/labels{/name}","comments_url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/issues/89/comments","events_url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/issues/89/events","html_url":"https://github.com/Sage-Bionetworks/syndccutils/pull/89","id":321733737,"number":89,"title":"Add manifest generation functionality from annotationUI","user":{"login":"karawoo","id":4452678,"avatar_url":"https://avatars2.githubusercontent.com/u/4452678?v=4","gravatar_id":"","url":"https://api.github.com/users/karawoo","html_url":"https://github.com/karawoo","followers_url":"https://api.github.com/users/karawoo/followers","following_url":"https://api.github.com/users/karawoo/following{/other_user}","gists_url":"https://api.github.com/users/karawoo/gists{/gist_id}","starred_url":"https://api.github.com/users/karawoo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/karawoo/subscriptions","organizations_url":"https://api.github.com/users/karawoo/orgs","repos_url":"https://api.github.com/users/karawoo/repos","events_url":"https://api.github.com/users/karawoo/events{/privacy}","received_events_url":"https://api.github.com/users/karawoo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-05-09T21:31:15Z","updated_at":"2018-05-24T18:40:46Z","closed_at":null,"author_association":"COLLABORATOR","pull_request":{"url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/pulls/89","html_url":"https://github.com/Sage-Bionetworks/syndccutils/pull/89","diff_url":"https://github.com/Sage-Bionetworks/syndccutils/pull/89.diff","patch_url":"https://github.com/Sage-Bionetworks/syndccutils/pull/89.patch"},"body":"Closes #88. This provides some new functions based on code from annotationUI that will allow for programmatic generation of manifests. I've focused on mirroring the functionality that was in annotationUI, but this could be updated/expanded in the future. Updating annotationUI is happening on my [pkg-refactor branch](https://github.com/karawoo/annotationUI/commits/pkg-refactor).\r\n\r\nFor testing purposes I've included a copy of the current annotations table (syn10242922) in `inst/testdata`. This allows me to test some of the functions without making any calls to synapse. It does make the data available to end users of the package with `system.file()`; if anyone objects to that then I can move it into the testing directory where it won't be available.\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/issues/comments/391818072","html_url":"https://github.com/Sage-Bionetworks/syndccutils/pull/89#issuecomment-391818072","issue_url":"https://api.github.com/repos/Sage-Bionetworks/syndccutils/issues/89","id":391818072,"user":{"login":"karawoo","id":4452678,"avatar_url":"https://avatars2.githubusercontent.com/u/4452678?v=4","gravatar_id":"","url":"https://api.github.com/users/karawoo","html_url":"https://github.com/karawoo","followers_url":"https://api.github.com/users/karawoo/followers","following_url":"https://api.github.com/users/karawoo/following{/other_user}","gists_url":"https://api.github.com/users/karawoo/gists{/gist_id}","starred_url":"https://api.github.com/users/karawoo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/karawoo/subscriptions","organizations_url":"https://api.github.com/users/karawoo/orgs","repos_url":"https://api.github.com/users/karawoo/repos","events_url":"https://api.github.com/users/karawoo/events{/privacy}","received_events_url":"https://api.github.com/users/karawoo/received_events","type":"User","site_admin":false},"created_at":"2018-05-24T18:40:46Z","updated_at":"2018-05-24T18:40:46Z","author_association":"COLLABORATOR","body":"@jaeddy updated to rename `generate_manifest()` to `generate_manifest_template()`, can you take a quick look?"}}
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