{"action":"created","issue":{"url":"https://api.github.com/repos/mantidproject/mantid/issues/22439","repository_url":"https://api.github.com/repos/mantidproject/mantid","labels_url":"https://api.github.com/repos/mantidproject/mantid/issues/22439/labels{/name}","comments_url":"https://api.github.com/repos/mantidproject/mantid/issues/22439/comments","events_url":"https://api.github.com/repos/mantidproject/mantid/issues/22439/events","html_url":"https://github.com/mantidproject/mantid/pull/22439","id":323972147,"node_id":"MDExOlB1bGxSZXF1ZXN0MTg4Njk3ODUx","number":22439,"title":"Update GSASIIRefineFitPeaks system test input to file which gives a good 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Tests","color":"c7def8","default":false}],"state":"open","locked":false,"assignee":{"login":"soininen","id":19147159,"node_id":"MDQ6VXNlcjE5MTQ3MTU5","avatar_url":"https://avatars3.githubusercontent.com/u/19147159?v=4","gravatar_id":"","url":"https://api.github.com/users/soininen","html_url":"https://github.com/soininen","followers_url":"https://api.github.com/users/soininen/followers","following_url":"https://api.github.com/users/soininen/following{/other_user}","gists_url":"https://api.github.com/users/soininen/gists{/gist_id}","starred_url":"https://api.github.com/users/soininen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/soininen/subscriptions","organizations_url":"https://api.github.com/users/soininen/orgs","repos_url":"https://api.github.com/users/soininen/repos","events_url":"https://api.github.com/users/soininen/events{/privacy}","received_events_url":"https://api.github.com/users/soininen/received_events","type":"User","site_admin":false},"assignees":[{"login":"soininen","id":19147159,"node_id":"MDQ6VXNlcjE5MTQ3MTU5","avatar_url":"https://avatars3.githubusercontent.com/u/19147159?v=4","gravatar_id":"","url":"https://api.github.com/users/soininen","html_url":"https://github.com/soininen","followers_url":"https://api.github.com/users/soininen/followers","following_url":"https://api.github.com/users/soininen/following{/other_user}","gists_url":"https://api.github.com/users/soininen/gists{/gist_id}","starred_url":"https://api.github.com/users/soininen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/soininen/subscriptions","organizations_url":"https://api.github.com/users/soininen/orgs","repos_url":"https://api.github.com/users/soininen/repos","events_url":"https://api.github.com/users/soininen/events{/privacy}","received_events_url":"https://api.github.com/users/soininen/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/mantidproject/mantid/milestones/67","html_url":"https://github.com/mantidproject/mantid/milestone/67","labels_url":"https://api.github.com/repos/mantidproject/mantid/milestones/67/labels","id":3113719,"node_id":"MDk6TWlsZXN0b25lMzExMzcxOQ==","number":67,"title":"Release 3.13","description":"Code Freeze: 29th June\r\nBeta Test: 3rd-17th July","creator":{"login":"NickDraper","id":1017173,"node_id":"MDQ6VXNlcjEwMTcxNzM=","avatar_url":"https://avatars1.githubusercontent.com/u/1017173?v=4","gravatar_id":"","url":"https://api.github.com/users/NickDraper","html_url":"https://github.com/NickDraper","followers_url":"https://api.github.com/users/NickDraper/followers","following_url":"https://api.github.com/users/NickDraper/following{/other_user}","gists_url":"https://api.github.com/users/NickDraper/gists{/gist_id}","starred_url":"https://api.github.com/users/NickDraper/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NickDraper/subscriptions","organizations_url":"https://api.github.com/users/NickDraper/orgs","repos_url":"https://api.github.com/users/NickDraper/repos","events_url":"https://api.github.com/users/NickDraper/events{/privacy}","received_events_url":"https://api.github.com/users/NickDraper/received_events","type":"User","site_admin":false},"open_issues":289,"closed_issues":334,"state":"open","created_at":"2018-02-13T15:37:12Z","updated_at":"2018-06-13T20:58:55Z","due_on":"2018-07-23T07:00:00Z","closed_at":null},"comments":1,"created_at":"2018-05-17T10:55:03Z","updated_at":"2018-06-14T09:18:36Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/mantidproject/mantid/pulls/22439","html_url":"https://github.com/mantidproject/mantid/pull/22439","diff_url":"https://github.com/mantidproject/mantid/pull/22439.diff","patch_url":"https://github.com/mantidproject/mantid/pull/22439.patch"},"body":"As of revision 3390, it appears that not having a good fit is now a throw-able offence in GSAS-II. This PR changes the input file of the system test to one which gives a good enough fit.\r\n\r\n*Edit:* [changeset 3392](https://subversion.xray.aps.anl.gov/trac/pyGSAS/changeset/3392/trunk/GSASIIdataGUI.py) fixed this bug in GSAS-II, but it's probably still worth having a proper fit in the sytem tests\r\n\r\n**To test:**\r\n\r\nInstall the latest version of GSASII (from Linux, you can do this with `python scripts/GSAS-II/install_gsas_proxy.py -b`), then run `./systemtest -R GSASIIRefineFitPeaks`. Make sure tests pass\r\n\r\nFixes #22438 \r\n\r\n**Release Notes** \r\nInternal change, doesn't need to be in the release notes\r\n\r\n---\r\n\r\n#### Reviewer ####\r\n\r\nPlease comment on the following ([full description](http://www.mantidproject.org/Individual_Ticket_Testing)):\r\n\r\n##### Code Review #####\r\n\r\n- [ ] Is the code of an acceptable quality?\r\n- [ ] Does the code conform to the [coding standards](http://www.mantidproject.org/Coding_Standards)?\r\n- [ ] Are the unit tests small and test the class in isolation?\r\n- [ ] If there are changes in the release notes then do they describe the changes appropriately?\r\n\r\n##### Functional Tests #####\r\n\r\n- [ ] Do changes function as described? Add comments below that describe the tests performed?\r\n- [ ] Do the changes handle unexpected situations, e.g. bad input?\r\n- [ ] Has the relevant (user and developer) documentation been added/updated?\r\n\r\nDoes everything look good? Mark the review as **Approve**. A member of `@mantidproject/gatekeepers` will take care of it.\r\n"},"comment":{"url":"https://api.github.com/repos/mantidproject/mantid/issues/comments/397229263","html_url":"https://github.com/mantidproject/mantid/pull/22439#issuecomment-397229263","issue_url":"https://api.github.com/repos/mantidproject/mantid/issues/22439","id":397229263,"node_id":"MDEyOklzc3VlQ29tbWVudDM5NzIyOTI2Mw==","user":{"login":"soininen","id":19147159,"node_id":"MDQ6VXNlcjE5MTQ3MTU5","avatar_url":"https://avatars3.githubusercontent.com/u/19147159?v=4","gravatar_id":"","url":"https://api.github.com/users/soininen","html_url":"https://github.com/soininen","followers_url":"https://api.github.com/users/soininen/followers","following_url":"https://api.github.com/users/soininen/following{/other_user}","gists_url":"https://api.github.com/users/soininen/gists{/gist_id}","starred_url":"https://api.github.com/users/soininen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/soininen/subscriptions","organizations_url":"https://api.github.com/users/soininen/orgs","repos_url":"https://api.github.com/users/soininen/repos","events_url":"https://api.github.com/users/soininen/events{/privacy}","received_events_url":"https://api.github.com/users/soininen/received_events","type":"User","site_admin":false},"created_at":"2018-06-14T09:18:36Z","updated_at":"2018-06-14T09:18:36Z","author_association":"CONTRIBUTOR","body":"I have problems running the system tests. An assertion fails during the tests. Here is the output:\r\n```\r\nRunning tests...\r\nFrameworkManager-[Notice] Welcome to Mantid 3.12.20180517.1050\r\nFrameworkManager-[Notice] Please cite: http://dx.doi.org/10.1016/j.nima.2014.07.029 and this release: http://dx.doi.org/10.5286/Software/Mantid\r\nError importing module 'PVPythonTest': No module named paraview.simple\r\nError importing module 'FittingBenchmarks': The \"mantidplot\" module can only be used from within MantidPlot.\r\nThu, 14 Jun 2018 11:14:59: Executing GSASIIRefineFitPeaksTest.GSASIIRefineFitPeaksPawleyTest\r\nExecuting test script '/users/soininen/mantid-build-Default/bin/mantidpython --classic /tmp/tmp5HGBAb'\r\nConfigService-[Information] Unable to locate directory at: /etc/mantid/instrument\r\nConfigService-[Information] This is Mantid version 3.12.20180517.1050 revision g37d3131\r\nConfigService-[Information] running on johnsonpc3 starting 2018-06-14T09:14Z\r\nConfigService-[Information] Properties file(s) loaded: /users/soininen/mantid-build-Default/bin/Mantid.properties, /home/cs/soininen/.mantid/Mantid.user.properties\r\nConfigService-[Information] Logging to: /home/cs/soininen/.mantid/mantid.log\r\nConfigService-[Information] Unable to locate directory at: /etc/mantid/instrument\r\nFrameworkManager-[Notice] Welcome to Mantid 3.12.20180517.1050\r\nFrameworkManager-[Notice] Please cite: http://dx.doi.org/10.1016/j.nima.2014.07.029 and this release: http://dx.doi.org/10.5286/Software/Mantid\r\nFrameworkManager-[Information] Instrument updates disabled - cannot update instrument definitions.\r\nFrameworkManager-[Information] Version check disabled.\r\nLoad-[Notice] Load started\r\nLoad-[Information] Algorithm: Load v1\r\nLoad-[Information] Execution Date: 2018-Jun-14 09:15:01\r\nLoad-[Information] Execution Duration: -1 seconds\r\nLoad-[Information] Parameters:\r\nLoad-[Information]   Name: Filename, Value: /users/soininen/m ... ocused_bank_1.nxs, Default?: No, Direction: Input\r\nLoad-[Information]   Name: OutputWorkspace, Value: input_ws, Default?: No, Direction: Output\r\nLoad-[Information]   Name: LoaderName, Value: LoadNexusProcessed, Default?: No, Direction: Output\r\nLoad-[Information]   Name: LoaderVersion, Value: 1, Default?: No, Direction: Output\r\nLoad-[Information]   Name: SpectrumMin, Value: 1, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: SpectrumMax, Value: 2147483647, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: SpectrumList, Value: , Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: EntryNumber, Value: 0, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: LoadHistory, Value: 1, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: FastMultiPeriod, Value: 1, Default?: Yes, Direction: Input\r\nLoad-[Information] Using LoadNexusProcessed version 1.\r\nInstrumentDefinitionParser-[Information] Loading geometry cache from /home/cs/soininen/.mantid/instrument/geometryCache/ENGIN-X9af32bc1eb2fa7edd195ae0abce9fa020887b0f2.vtp\r\nLoad-[Notice] Load successful, Duration 0.12 seconds\r\nGSASIIRefineFitPeaks-[Notice] GSASIIRefineFitPeaks started\r\nGSASIIRefineFitPeaks-[Information] Algorithm: GSASIIRefineFitPeaks v1\r\nGSASIIRefineFitPeaks-[Information] Execution Date: 2018-Jun-14 09:15:01\r\nGSASIIRefineFitPeaks-[Information] Execution Duration: -1 seconds\r\nGSASIIRefineFitPeaks-[Information] Parameters:\r\nGSASIIRefineFitPeaks-[Information]   Name: RefinementMethod, Value: Pawley refinement, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: InputWorkspace, Value: input_ws, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: WorkspaceIndex, Value: 0, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: InstrumentFile, Value: /users/soininen/m ... 16_North_bank.prm, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PhaseInfoFiles, Value: /users/soininen/m ... Test/Fe-alpha.cif, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PathToGSASII, Value: /users/soininen/g2conda/GSASII, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: XMin, Value: 10000, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: XMax, Value: 40000, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: RefineSigma, Value: 1, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: RefineGamma, Value: 1, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: OutputWorkspace, Value: FittedPeaks, Default?: No, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: LatticeParameters, Value: LatticeParameters, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: Rwp, Value: 0, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: Sigma, Value: 0, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: Gamma, Value: 0, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: SaveGSASIIProjectFile, Value: /users/soininen/m ... aksPawleyTest.gpx, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PawleyDMin, Value: 1, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PawleyNegativeWeight, Value: 0, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: MuteGSASII, Value: 1, Default?: No, Direction: Input\r\nConvertUnits-[Notice] ConvertUnits started\r\nConvertUnits-[Information] Algorithm: ConvertUnits v1\r\nConvertUnits-[Information] Execution Date: 2018-Jun-14 09:15:01\r\nConvertUnits-[Information] Execution Duration: -1 seconds\r\nConvertUnits-[Information] Parameters:\r\nConvertUnits-[Information]   Name: InputWorkspace, Value: input_ws, Default?: No, Direction: Input\r\nConvertUnits-[Information]   Name: OutputWorkspace, Value: input_ws_d, Default?: No, Direction: Output\r\nConvertUnits-[Information]   Name: Target, Value: dSpacing, Default?: No, Direction: Input\r\nConvertUnits-[Information]   Name: EMode, Value: Elastic, Default?: Yes, Direction: Input\r\nConvertUnits-[Information]   Name: EFixed, Value: 8.9884656743115785e+307, Default?: Yes, Direction: Input\r\nConvertUnits-[Information]   Name: AlignBins, Value: 0, Default?: Yes, Direction: Input\r\nConvertUnits-[Information]   Name: ConvertFromPointData, Value: 1, Default?: Yes, Direction: Input\r\nConvertUnits-[Notice] ConvertUnits successful, Duration 0.03 seconds\r\nGSASIIRefineFitPeaks-[Information] Suppressing stdout\r\nSaveFocusedXYE-[Notice] SaveFocusedXYE started (child)\r\nSaveFocusedXYE-[Information] Algorithm: SaveFocusedXYE v1\r\nSaveFocusedXYE-[Information] Execution Date: 2018-Jun-14 09:15:06\r\nSaveFocusedXYE-[Information] Execution Duration: -1 seconds\r\nSaveFocusedXYE-[Information] Parameters:\r\nSaveFocusedXYE-[Information]   Name: InputWorkspace, Value: __TMP0x565a000, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: Filename, Value: /tmp/GSASIIRefine ... d_spectrum-0.fxye, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: SplitFiles, Value: 0, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: StartAtBankNumber, Value: 0, Default?: Yes, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: Append, Value: 0, Default?: Yes, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: IncludeHeader, Value: 0, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: Format, Value: XYE, Default?: Yes, Direction: Input\r\nSaveFocusedXYE-[Notice] SaveFocusedXYE successful, Duration 0.02 seconds\r\n/users/soininen/g2conda/GSASII/GSASIIstrIO.py:2813: RuntimeWarning: invalid value encountered in double_scalars\r\n  wtFr = hapData['Scale'][0]*General['Mass']/wtFrSum[hId]\r\n/users/soininen/g2conda/GSASII/GSASIIpwd.py:644: RuntimeWarning: invalid value encountered in sqrt\r\n  widths = [np.sqrt(sig),gam]\r\n/users/soininen/g2conda/GSASII/GSASIIstrMath.py:4059: RuntimeWarning: invalid value encountered in double_scalars\r\n  Histogram['Residuals']['Rb'] = min(100.,100.*sumYB/sumYmB)\r\n/users/soininen/g2conda/GSASII/GSASIIstrMath.py:4060: RuntimeWarning: invalid value encountered in double_scalars\r\n  Histogram['Residuals']['wRb'] = min(100.,100.*ma.sqrt(sumwYB2/sumwYmB2))\r\nGSASIIRefineFitPeaks-[Notice] GSASIIRefineFitPeaks successful, Duration 6.61 seconds\r\nRESULT|iteration time_taken|1 6.77\r\nTraceback (most recent call last):\r\n  File \"/tmp/tmp5HGBAb\", line 9, in <module>\r\n    exitcode = systest.returnValidationCode(99)\r\n  File \"/home/cs/soininen/Sources/mantid/Testing/SystemTests/lib/systemtests/stresstesting.py\", line 375, in returnValidationCode\r\n    if self.doValidation():\r\n  File \"/home/cs/soininen/Sources/mantid/Testing/SystemTests/lib/systemtests/stresstesting.py\", line 345, in doValidation\r\n    validation = self.validate()\r\n  File \"/home/cs/soininen/Sources/mantid/Testing/SystemTests/tests/analysis/GSASIIRefineFitPeaksTest.py\", line 110, in validate\r\n    self.assertAlmostEqual(self.rwp, self._get_expected_rwp(), delta=1e-5)\r\n  File \"/usr/lib/python2.7/unittest/case.py\", line 561, in assertAlmostEqual\r\n    raise self.failureException(msg)\r\nAssertionError: 35.02589453517287 != 52.531414 within 1e-05 delta\r\n\r\nThu, 14 Jun 2018 11:15:08: Executing GSASIIRefineFitPeaksTest.GSASIIRefineFitPeaksRietveldTest\r\nExecuting test script '/users/soininen/mantid-build-Default/bin/mantidpython --classic /tmp/tmpMr1kj5'\r\nConfigService-[Information] Unable to locate directory at: /etc/mantid/instrument\r\nConfigService-[Information] This is Mantid version 3.12.20180517.1050 revision g37d3131\r\nConfigService-[Information] running on johnsonpc3 starting 2018-06-14T09:15Z\r\nConfigService-[Information] Properties file(s) loaded: /users/soininen/mantid-build-Default/bin/Mantid.properties, /home/cs/soininen/.mantid/Mantid.user.properties\r\nConfigService-[Information] Logging to: /home/cs/soininen/.mantid/mantid.log\r\nConfigService-[Information] Unable to locate directory at: /etc/mantid/instrument\r\nFrameworkManager-[Notice] Welcome to Mantid 3.12.20180517.1050\r\nFrameworkManager-[Notice] Please cite: http://dx.doi.org/10.1016/j.nima.2014.07.029 and this release: http://dx.doi.org/10.5286/Software/Mantid\r\nFrameworkManager-[Information] Instrument updates disabled - cannot update instrument definitions.\r\nFrameworkManager-[Information] Version check disabled.\r\nLoad-[Notice] Load started\r\nLoad-[Information] Algorithm: Load v1\r\nLoad-[Information] Execution Date: 2018-Jun-14 09:15:10\r\nLoad-[Information] Execution Duration: -1 seconds\r\nLoad-[Information] Parameters:\r\nLoad-[Information]   Name: Filename, Value: /users/soininen/m ... ocused_bank_1.nxs, Default?: No, Direction: Input\r\nLoad-[Information]   Name: OutputWorkspace, Value: input_ws, Default?: No, Direction: Output\r\nLoad-[Information]   Name: LoaderName, Value: LoadNexusProcessed, Default?: No, Direction: Output\r\nLoad-[Information]   Name: LoaderVersion, Value: 1, Default?: No, Direction: Output\r\nLoad-[Information]   Name: SpectrumMin, Value: 1, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: SpectrumMax, Value: 2147483647, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: SpectrumList, Value: , Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: EntryNumber, Value: 0, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: LoadHistory, Value: 1, Default?: Yes, Direction: Input\r\nLoad-[Information]   Name: FastMultiPeriod, Value: 1, Default?: Yes, Direction: Input\r\nLoad-[Information] Using LoadNexusProcessed version 1.\r\nInstrumentDefinitionParser-[Information] Loading geometry cache from /home/cs/soininen/.mantid/instrument/geometryCache/ENGIN-X9af32bc1eb2fa7edd195ae0abce9fa020887b0f2.vtp\r\nLoad-[Notice] Load successful, Duration 0.12 seconds\r\nGSASIIRefineFitPeaks-[Notice] GSASIIRefineFitPeaks started\r\nGSASIIRefineFitPeaks-[Information] Algorithm: GSASIIRefineFitPeaks v1\r\nGSASIIRefineFitPeaks-[Information] Execution Date: 2018-Jun-14 09:15:10\r\nGSASIIRefineFitPeaks-[Information] Execution Duration: -1 seconds\r\nGSASIIRefineFitPeaks-[Information] Parameters:\r\nGSASIIRefineFitPeaks-[Information]   Name: RefinementMethod, Value: Rietveld refinement, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: InputWorkspace, Value: input_ws, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: WorkspaceIndex, Value: 0, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: InstrumentFile, Value: /users/soininen/m ... 16_North_bank.prm, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PhaseInfoFiles, Value: /users/soininen/m ... Test/Fe-alpha.cif, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PathToGSASII, Value: /users/soininen/g2conda/GSASII, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: XMin, Value: 10000, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: XMax, Value: 40000, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: RefineSigma, Value: 1, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: RefineGamma, Value: 1, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: OutputWorkspace, Value: FittedPeaks, Default?: No, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: LatticeParameters, Value: LatticeParameters, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: Rwp, Value: 0, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: Sigma, Value: 0, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: Gamma, Value: 0, Default?: Yes, Direction: Output\r\nGSASIIRefineFitPeaks-[Information]   Name: SaveGSASIIProjectFile, Value: /users/soininen/m ... sRietveldTest.gpx, Default?: No, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PawleyDMin, Value: 1, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: PawleyNegativeWeight, Value: 0, Default?: Yes, Direction: Input\r\nGSASIIRefineFitPeaks-[Information]   Name: MuteGSASII, Value: 1, Default?: No, Direction: Input\r\nConvertUnits-[Notice] ConvertUnits started\r\nConvertUnits-[Information] Algorithm: ConvertUnits v1\r\nConvertUnits-[Information] Execution Date: 2018-Jun-14 09:15:10\r\nConvertUnits-[Information] Execution Duration: -1 seconds\r\nConvertUnits-[Information] Parameters:\r\nConvertUnits-[Information]   Name: InputWorkspace, Value: input_ws, Default?: No, Direction: Input\r\nConvertUnits-[Information]   Name: OutputWorkspace, Value: input_ws_d, Default?: No, Direction: Output\r\nConvertUnits-[Information]   Name: Target, Value: dSpacing, Default?: No, Direction: Input\r\nConvertUnits-[Information]   Name: EMode, Value: Elastic, Default?: Yes, Direction: Input\r\nConvertUnits-[Information]   Name: EFixed, Value: 8.9884656743115785e+307, Default?: Yes, Direction: Input\r\nConvertUnits-[Information]   Name: AlignBins, Value: 0, Default?: Yes, Direction: Input\r\nConvertUnits-[Information]   Name: ConvertFromPointData, Value: 1, Default?: Yes, Direction: Input\r\nConvertUnits-[Notice] ConvertUnits successful, Duration 0.03 seconds\r\nGSASIIRefineFitPeaks-[Information] Suppressing stdout\r\nSaveFocusedXYE-[Notice] SaveFocusedXYE started (child)\r\nSaveFocusedXYE-[Information] Algorithm: SaveFocusedXYE v1\r\nSaveFocusedXYE-[Information] Execution Date: 2018-Jun-14 09:15:10\r\nSaveFocusedXYE-[Information] Execution Duration: -1 seconds\r\nSaveFocusedXYE-[Information] Parameters:\r\nSaveFocusedXYE-[Information]   Name: InputWorkspace, Value: __TMP0x4fd8000, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: Filename, Value: /tmp/GSASIIRefine ... d_spectrum-0.fxye, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: SplitFiles, Value: 0, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: StartAtBankNumber, Value: 0, Default?: Yes, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: Append, Value: 0, Default?: Yes, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: IncludeHeader, Value: 0, Default?: No, Direction: Input\r\nSaveFocusedXYE-[Information]   Name: Format, Value: XYE, Default?: Yes, Direction: Input\r\nSaveFocusedXYE-[Notice] SaveFocusedXYE successful, Duration 0.03 seconds\r\n/users/soininen/g2conda/GSASII/GSASIIpwd.py:644: RuntimeWarning: invalid value encountered in sqrt\r\n  widths = [np.sqrt(sig),gam]\r\n/users/soininen/g2conda/GSASII/GSASIIstrMath.py:4059: RuntimeWarning: invalid value encountered in double_scalars\r\n  Histogram['Residuals']['Rb'] = min(100.,100.*sumYB/sumYmB)\r\n/users/soininen/g2conda/GSASII/GSASIIstrMath.py:4060: RuntimeWarning: invalid value encountered in double_scalars\r\n  Histogram['Residuals']['wRb'] = min(100.,100.*ma.sqrt(sumwYB2/sumwYmB2))\r\nGSASIIRefineFitPeaks-[Notice] GSASIIRefineFitPeaks successful, Duration 5.43 seconds\r\nRESULT|iteration time_taken|1 5.59\r\nTraceback (most recent call last):\r\n  File \"/tmp/tmpMr1kj5\", line 9, in <module>\r\n    exitcode = systest.returnValidationCode(99)\r\n  File \"/home/cs/soininen/Sources/mantid/Testing/SystemTests/lib/systemtests/stresstesting.py\", line 375, in returnValidationCode\r\n    if self.doValidation():\r\n  File \"/home/cs/soininen/Sources/mantid/Testing/SystemTests/lib/systemtests/stresstesting.py\", line 345, in doValidation\r\n    validation = self.validate()\r\n  File \"/home/cs/soininen/Sources/mantid/Testing/SystemTests/tests/analysis/GSASIIRefineFitPeaksTest.py\", line 110, in validate\r\n    self.assertAlmostEqual(self.rwp, self._get_expected_rwp(), delta=1e-5)\r\n  File \"/usr/lib/python2.7/unittest/case.py\", line 561, in assertAlmostEqual\r\n    raise self.failureException(msg)\r\nAssertionError: 39.09514820335615 != 53.223025 within 1e-05 delta\r\n\r\n\r\nFAILED:\r\nGSASIIRefineFitPeaksTest.GSASIIRefineFitPeaksPawleyTest\r\nGSASIIRefineFitPeaksTest.GSASIIRefineFitPeaksRietveldTest\r\n\r\n0% tests passed, 2 tests failed out of 2 (429 skipped)\r\nAll tests passed? False\r\n```\r\n\r\nInitially I used an older version of GSASII but the problems persist even with the latest installation."}}
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