{"action":"created","comment":{"url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/comments/238250994","pull_request_review_id":180743695,"id":238250994,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIzODI1MDk5NA==","diff_hunk":"@@ -25,9 +25,11 @@ enum ExitReasons {\n     analysisNotLoadable(244, \"Could not load analysis\"),\n     severeConfigurationErrors(243, \"Severe configuration errors occurred.\"),\n     unhandledException(242, \"Unhandled exception.\"),\n-    unknownSSHHost(241, \"Unknown SSH host.\"),\n+    unknownSSHHost(241, \"Could not setup SSH access with your configuration: The specified host is not available .\"),","path":"RoddyCore/src/de/dkfz/roddy/ExitReasons.groovy","position":28,"original_position":5,"commit_id":"d719e01cb9e0b6f06bbb458602177e00ed4afd16","original_commit_id":"d719e01cb9e0b6f06bbb458602177e00ed4afd16","user":{"login":"vinjana","id":275224,"node_id":"MDQ6VXNlcjI3NTIyNA==","avatar_url":"https://avatars1.githubusercontent.com/u/275224?v=4","gravatar_id":"","url":"https://api.github.com/users/vinjana","html_url":"https://github.com/vinjana","followers_url":"https://api.github.com/users/vinjana/followers","following_url":"https://api.github.com/users/vinjana/following{/other_user}","gists_url":"https://api.github.com/users/vinjana/gists{/gist_id}","starred_url":"https://api.github.com/users/vinjana/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vinjana/subscriptions","organizations_url":"https://api.github.com/users/vinjana/orgs","repos_url":"https://api.github.com/users/vinjana/repos","events_url":"https://api.github.com/users/vinjana/events{/privacy}","received_events_url":"https://api.github.com/users/vinjana/received_events","type":"User","site_admin":false},"body":"Yes, and that is really good. But in this particular case the message did not include any advise how to solve the problem. Also this problem is so complex (proxy, firewall, network config, dead remote, routing), that most advises would aim too short.","created_at":"2018-12-03T12:34:52Z","updated_at":"2018-12-03T12:34:53Z","html_url":"https://github.com/TheRoddyWMS/Roddy/pull/318#discussion_r238250994","pull_request_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/comments/238250994"},"html":{"href":"https://github.com/TheRoddyWMS/Roddy/pull/318#discussion_r238250994"},"pull_request":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318"}},"in_reply_to_id":238238113},"pull_request":{"url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318","id":234382226,"node_id":"MDExOlB1bGxSZXF1ZXN0MjM0MzgyMjI2","html_url":"https://github.com/TheRoddyWMS/Roddy/pull/318","diff_url":"https://github.com/TheRoddyWMS/Roddy/pull/318.diff","patch_url":"https://github.com/TheRoddyWMS/Roddy/pull/318.patch","issue_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/318","number":318,"state":"open","locked":false,"title":"Several bugfixes related to JobManager issues.","user":{"login":"dankwart-de","id":6582183,"node_id":"MDQ6VXNlcjY1ODIxODM=","avatar_url":"https://avatars0.githubusercontent.com/u/6582183?v=4","gravatar_id":"","url":"https://api.github.com/users/dankwart-de","html_url":"https://github.com/dankwart-de","followers_url":"https://api.github.com/users/dankwart-de/followers","following_url":"https://api.github.com/users/dankwart-de/following{/other_user}","gists_url":"https://api.github.com/users/dankwart-de/gists{/gist_id}","starred_url":"https://api.github.com/users/dankwart-de/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dankwart-de/subscriptions","organizations_url":"https://api.github.com/users/dankwart-de/orgs","repos_url":"https://api.github.com/users/dankwart-de/repos","events_url":"https://api.github.com/users/dankwart-de/events{/privacy}","received_events_url":"https://api.github.com/users/dankwart-de/received_events","type":"User","site_admin":false},"body":"This commit needs a fresh version of BatchEuphoria with the fixed JobManager issues!\r\n\r\nAdded the \"integer\" type to RoddyAppConfig class. We might think of reusing similar code from ConfigurationValue.\r\n\r\nRemoved the tryInitialize.waitFor() from ExecutionService. It was either used wrong or not used at all. Made tryInitialize() work.\r\n\r\nSSHExecutionService:\r\n- Added another catch block for failed connection attempts. It will catch  unknown host exceptions.\r\n- Changed exit codes to 255, 1 is more for failed submission items.\r\n- Added two additional log messages for SSH.\r\n\r\nRoddy / Constants\r\n- Added the jobManagerUpdateInterval constant.\r\n- Corrected the Job manager initialization in Roddy so that the new constant is used and the jobManager is created with the update interval setting.\r\n- Corrected the waitForJobs() method and the exit(int) method.","created_at":"2018-11-28T18:35:51Z","updated_at":"2018-12-03T12:34:53Z","closed_at":null,"merged_at":null,"merge_commit_sha":"c70c661431c13edef57d53ca539d4102a82abace","assignee":null,"assignees":[],"requested_reviewers":[{"login":"askask","id":7806499,"node_id":"MDQ6VXNlcjc4MDY0OTk=","avatar_url":"https://avatars1.githubusercontent.com/u/7806499?v=4","gravatar_id":"","url":"https://api.github.com/users/askask","html_url":"https://github.com/askask","followers_url":"https://api.github.com/users/askask/followers","following_url":"https://api.github.com/users/askask/following{/other_user}","gists_url":"https://api.github.com/users/askask/gists{/gist_id}","starred_url":"https://api.github.com/users/askask/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/askask/subscriptions","organizations_url":"https://api.github.com/users/askask/orgs","repos_url":"https://api.github.com/users/askask/repos","events_url":"https://api.github.com/users/askask/events{/privacy}","received_events_url":"https://api.github.com/users/askask/received_events","type":"User","site_admin":false}],"requested_teams":[],"labels":[],"milestone":null,"commits_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318/commits","review_comments_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318/comments","review_comment_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/comments{/number}","comments_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/318/comments","statuses_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/statuses/d719e01cb9e0b6f06bbb458602177e00ed4afd16","head":{"label":"TheRoddyWMS:JobManagerFixes","ref":"JobManagerFixes","sha":"d719e01cb9e0b6f06bbb458602177e00ed4afd16","user":{"login":"TheRoddyWMS","id":32059355,"node_id":"MDEyOk9yZ2FuaXphdGlvbjMyMDU5MzU1","avatar_url":"https://avatars3.githubusercontent.com/u/32059355?v=4","gravatar_id":"","url":"https://api.github.com/users/TheRoddyWMS","html_url":"https://github.com/TheRoddyWMS","followers_url":"https://api.github.com/users/TheRoddyWMS/followers","following_url":"https://api.github.com/users/TheRoddyWMS/following{/other_user}","gists_url":"https://api.github.com/users/TheRoddyWMS/gists{/gist_id}","starred_url":"https://api.github.com/users/TheRoddyWMS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TheRoddyWMS/subscriptions","organizations_url":"https://api.github.com/users/TheRoddyWMS/orgs","repos_url":"https://api.github.com/users/TheRoddyWMS/repos","events_url":"https://api.github.com/users/TheRoddyWMS/events{/privacy}","received_events_url":"https://api.github.com/users/TheRoddyWMS/received_events","type":"Organization","site_admin":false},"repo":{"id":63849581,"node_id":"MDEwOlJlcG9zaXRvcnk2Mzg0OTU4MQ==","name":"Roddy","full_name":"TheRoddyWMS/Roddy","private":false,"owner":{"login":"TheRoddyWMS","id":32059355,"node_id":"MDEyOk9yZ2FuaXphdGlvbjMyMDU5MzU1","avatar_url":"https://avatars3.githubusercontent.com/u/32059355?v=4","gravatar_id":"","url":"https://api.github.com/users/TheRoddyWMS","html_url":"https://github.com/TheRoddyWMS","followers_url":"https://api.github.com/users/TheRoddyWMS/followers","following_url":"https://api.github.com/users/TheRoddyWMS/following{/other_user}","gists_url":"https://api.github.com/users/TheRoddyWMS/gists{/gist_id}","starred_url":"https://api.github.com/users/TheRoddyWMS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TheRoddyWMS/subscriptions","organizations_url":"https://api.github.com/users/TheRoddyWMS/orgs","repos_url":"https://api.github.com/users/TheRoddyWMS/repos","events_url":"https://api.github.com/users/TheRoddyWMS/events{/privacy}","received_events_url":"https://api.github.com/users/TheRoddyWMS/received_events","type":"Organization","site_admin":false},"html_url":"https://github.com/TheRoddyWMS/Roddy","description":"The Roddy workflow development and management system.","fork":false,"url":"https://api.github.com/repos/TheRoddyWMS/Roddy","forks_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/forks","keys_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/keys{/key_id}","collaborators_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/teams","hooks_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/hooks","issue_events_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/events{/number}","events_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/events","assignees_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/assignees{/user}","branches_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/branches{/branch}","tags_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/tags","blobs_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/refs{/sha}","trees_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/trees{/sha}","statuses_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/statuses/{sha}","languages_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/languages","stargazers_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/stargazers","contributors_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/contributors","subscribers_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/subscribers","subscription_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/subscription","commits_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/commits{/sha}","git_commits_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/commits{/sha}","comments_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/comments{/number}","issue_comment_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/comments{/number}","contents_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/contents/{+path}","compare_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/compare/{base}...{head}","merges_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/merges","archive_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/downloads","issues_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues{/number}","pulls_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls{/number}","milestones_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/milestones{/number}","notifications_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/labels{/name}","releases_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/releases{/id}","deployments_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/deployments","created_at":"2016-07-21T08:04:37Z","updated_at":"2018-11-29T07:40:55Z","pushed_at":"2018-12-03T11:44:35Z","git_url":"git://github.com/TheRoddyWMS/Roddy.git","ssh_url":"git@github.com:TheRoddyWMS/Roddy.git","clone_url":"https://github.com/TheRoddyWMS/Roddy.git","svn_url":"https://github.com/TheRoddyWMS/Roddy","homepage":"http://roddy-documentation.readthedocs.io","size":315138,"stargazers_count":5,"watchers_count":5,"language":"Groovy","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":false,"has_pages":true,"forks_count":2,"mirror_url":null,"archived":false,"open_issues_count":63,"license":{"key":"other","name":"Other","spdx_id":"NOASSERTION","url":null,"node_id":"MDc6TGljZW5zZTA="},"forks":2,"open_issues":63,"watchers":5,"default_branch":"master"}},"base":{"label":"TheRoddyWMS:master","ref":"master","sha":"1b52cca58f7d90fde3c2729f31d8eb74e8a8f867","user":{"login":"TheRoddyWMS","id":32059355,"node_id":"MDEyOk9yZ2FuaXphdGlvbjMyMDU5MzU1","avatar_url":"https://avatars3.githubusercontent.com/u/32059355?v=4","gravatar_id":"","url":"https://api.github.com/users/TheRoddyWMS","html_url":"https://github.com/TheRoddyWMS","followers_url":"https://api.github.com/users/TheRoddyWMS/followers","following_url":"https://api.github.com/users/TheRoddyWMS/following{/other_user}","gists_url":"https://api.github.com/users/TheRoddyWMS/gists{/gist_id}","starred_url":"https://api.github.com/users/TheRoddyWMS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TheRoddyWMS/subscriptions","organizations_url":"https://api.github.com/users/TheRoddyWMS/orgs","repos_url":"https://api.github.com/users/TheRoddyWMS/repos","events_url":"https://api.github.com/users/TheRoddyWMS/events{/privacy}","received_events_url":"https://api.github.com/users/TheRoddyWMS/received_events","type":"Organization","site_admin":false},"repo":{"id":63849581,"node_id":"MDEwOlJlcG9zaXRvcnk2Mzg0OTU4MQ==","name":"Roddy","full_name":"TheRoddyWMS/Roddy","private":false,"owner":{"login":"TheRoddyWMS","id":32059355,"node_id":"MDEyOk9yZ2FuaXphdGlvbjMyMDU5MzU1","avatar_url":"https://avatars3.githubusercontent.com/u/32059355?v=4","gravatar_id":"","url":"https://api.github.com/users/TheRoddyWMS","html_url":"https://github.com/TheRoddyWMS","followers_url":"https://api.github.com/users/TheRoddyWMS/followers","following_url":"https://api.github.com/users/TheRoddyWMS/following{/other_user}","gists_url":"https://api.github.com/users/TheRoddyWMS/gists{/gist_id}","starred_url":"https://api.github.com/users/TheRoddyWMS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/TheRoddyWMS/subscriptions","organizations_url":"https://api.github.com/users/TheRoddyWMS/orgs","repos_url":"https://api.github.com/users/TheRoddyWMS/repos","events_url":"https://api.github.com/users/TheRoddyWMS/events{/privacy}","received_events_url":"https://api.github.com/users/TheRoddyWMS/received_events","type":"Organization","site_admin":false},"html_url":"https://github.com/TheRoddyWMS/Roddy","description":"The Roddy workflow development and management system.","fork":false,"url":"https://api.github.com/repos/TheRoddyWMS/Roddy","forks_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/forks","keys_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/keys{/key_id}","collaborators_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/teams","hooks_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/hooks","issue_events_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/events{/number}","events_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/events","assignees_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/assignees{/user}","branches_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/branches{/branch}","tags_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/tags","blobs_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/refs{/sha}","trees_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/trees{/sha}","statuses_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/statuses/{sha}","languages_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/languages","stargazers_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/stargazers","contributors_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/contributors","subscribers_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/subscribers","subscription_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/subscription","commits_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/commits{/sha}","git_commits_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/git/commits{/sha}","comments_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/comments{/number}","issue_comment_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/comments{/number}","contents_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/contents/{+path}","compare_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/compare/{base}...{head}","merges_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/merges","archive_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/downloads","issues_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues{/number}","pulls_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls{/number}","milestones_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/milestones{/number}","notifications_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/labels{/name}","releases_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/releases{/id}","deployments_url":"https://api.github.com/repos/TheRoddyWMS/Roddy/deployments","created_at":"2016-07-21T08:04:37Z","updated_at":"2018-11-29T07:40:55Z","pushed_at":"2018-12-03T11:44:35Z","git_url":"git://github.com/TheRoddyWMS/Roddy.git","ssh_url":"git@github.com:TheRoddyWMS/Roddy.git","clone_url":"https://github.com/TheRoddyWMS/Roddy.git","svn_url":"https://github.com/TheRoddyWMS/Roddy","homepage":"http://roddy-documentation.readthedocs.io","size":315138,"stargazers_count":5,"watchers_count":5,"language":"Groovy","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":false,"has_pages":true,"forks_count":2,"mirror_url":null,"archived":false,"open_issues_count":63,"license":{"key":"other","name":"Other","spdx_id":"NOASSERTION","url":null,"node_id":"MDc6TGljZW5zZTA="},"forks":2,"open_issues":63,"watchers":5,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318"},"html":{"href":"https://github.com/TheRoddyWMS/Roddy/pull/318"},"issue":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/318"},"comments":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/issues/318/comments"},"review_comments":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318/comments"},"review_comment":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/pulls/318/commits"},"statuses":{"href":"https://api.github.com/repos/TheRoddyWMS/Roddy/statuses/d719e01cb9e0b6f06bbb458602177e00ed4afd16"}},"author_association":"CONTRIBUTOR"}}
{"actor":{"display_login":"vinjana"}}