{"action":"created","comment":{"url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/comments/221999465","pull_request_review_id":160782707,"id":221999465,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIyMTk5OTQ2NQ==","diff_hunk":"@@ -21,7 +21,7 @@ object CwlDecoder {\n     val cwlToolResult =\n       Try(CwltoolRunner.instance.salad(path))\n         .toEither\n-        .leftMap(t => NonEmptyList.one(s\"running cwltool on file ${path.toString} failed with ${t.getMessage}\"))\n+        .leftMap(t => NonEmptyList.one(s\"running cwltool on file ${path.toString} failed with $t\"))","path":"cwl/src/main/scala/cwl/CwlDecoder.scala","position":5,"original_position":5,"commit_id":"5505bb99d782f91a6dc4b68d462c2572c4efb82a","original_commit_id":"5505bb99d782f91a6dc4b68d462c2572c4efb82a","user":{"login":"kshakir","id":791985,"node_id":"MDQ6VXNlcjc5MTk4NQ==","avatar_url":"https://avatars1.githubusercontent.com/u/791985?v=4","gravatar_id":"","url":"https://api.github.com/users/kshakir","html_url":"https://github.com/kshakir","followers_url":"https://api.github.com/users/kshakir/followers","following_url":"https://api.github.com/users/kshakir/following{/other_user}","gists_url":"https://api.github.com/users/kshakir/gists{/gist_id}","starred_url":"https://api.github.com/users/kshakir/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kshakir/subscriptions","organizations_url":"https://api.github.com/users/kshakir/orgs","repos_url":"https://api.github.com/users/kshakir/repos","events_url":"https://api.github.com/users/kshakir/events{/privacy}","received_events_url":"https://api.github.com/users/kshakir/received_events","type":"User","site_admin":false},"body":"While you're here, remove the redundant `.toString` then LGTM.","created_at":"2018-10-02T15:28:48Z","updated_at":"2018-10-02T15:28:52Z","html_url":"https://github.com/broadinstitute/cromwell/pull/4190#discussion_r221999465","pull_request_url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/4190","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/comments/221999465"},"html":{"href":"https://github.com/broadinstitute/cromwell/pull/4190#discussion_r221999465"},"pull_request":{"href":"https://api.github.com/repos/broadinstitute/cromwell/pulls/4190"}}},"pull_request":{"url":"https://api.github.com/repos/broadinstitute/cromwell/pulls/4190","id":219505891,"node_id":"MDExOlB1bGxSZXF1ZXN0MjE5NTA1ODkx","html_url":"https://github.com/broadinstitute/cromwell/pull/4190","diff_url":"https://github.com/broadinstitute/cromwell/pull/4190.diff","patch_url":"https://github.com/broadinstitute/cromwell/pull/4190.patch","issue_url":"https://api.github.com/repos/broadinstitute/cromwell/issues/4190","number":4190,"state":"open","locked":false,"title":"Fix CWL \"failed with null\" error message","user":{"login":"aednichols","id":1087943,"node_id":"MDQ6VXNlcjEwODc5NDM=","avatar_url":"https://avatars3.githubusercontent.com/u/1087943?v=4","gravatar_id":"","url":"https://api.github.com/users/aednichols","html_url":"https://github.com/aednichols","followers_url":"https://api.github.com/users/aednichols/followers","following_url":"https://api.github.com/users/aednichols/following{/other_user}","gists_url":"https://api.github.com/users/aednichols/gists{/gist_id}","starred_url":"https://api.github.com/users/aednichols/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aednichols/subscriptions","organizations_url":"https://api.github.com/users/aednichols/orgs","repos_url":"https://api.github.com/users/aednichols/repos","events_url":"https://api.github.com/users/aednichols/events{/privacy}","received_events_url":"https://api.github.com/users/aednichols/received_events","type":"User","site_admin":false},"body":"Ran into this while working on #4119 \r\n\r\nBefore:\r\n```\r\nWorkflow input processing failed:\r\nrunning cwltool on file /var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/e0ae0c88-17c0-476b-9b74-bc5562b22ea3.temp.4377309718155227727/e0ae0c88-17c0-476b-9b74-bc5562b22ea3.cwl failed with null\r\n```\r\nAfter:\r\n```\r\nWorkflow input processing failed:\r\nrunning cwltool on file /var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl failed with Traceback (most recent call last):\r\n  File \"/Users/anichols/Library/Caches/Coursier/v1/https/broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/heterodon/1.0.0-beta1/heterodon-1.0.0-beta1-single.jar/Lib/heterodon/__init__.py\", line 24, in apply\r\n  File \"<string>\", line 1, in <module>\r\n  File \"<string>\", line 12, in cwltool_salad\r\n  File \"/Users/anichols/Library/Caches/Coursier/v1/https/broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/heterodon/1.0.0-beta1/heterodon-1.0.0-beta1-single.jar/Lib/cwltool/load_tool.py\", line 279, in validate_document\r\n  File \"/Users/anichols/Library/Caches/Coursier/v1/https/broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/heterodon/1.0.0-beta1/heterodon-1.0.0-beta1-single.jar/Lib/schema_salad/ref_resolver.py\", line 915, in resolve_all\r\n  File \"/Users/anichols/Library/Caches/Coursier/v1/https/broadinstitute.jfrog.io/broadinstitute/libs-release/org/broadinstitute/heterodon/1.0.0-beta1/heterodon-1.0.0-beta1-single.jar/Lib/schema_salad/ref_resolver.py\", line 1087, in validate_links\r\nschema_salad.validate.ValidationException: ../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl:11:1: checking field `steps`\r\n../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl:19:3:   checking object `../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl#compile`\r\n../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl:20:5:     Field `run` contains undefined reference to `file:///var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/arguments.cwl`\r\n../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl:12:3:   checking object `../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl#untar`\r\n../../../../../var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/c8eb79b9-eee9-4796-b374-4841ff18a27d.cwl:13:5:     Field `run` contains undefined reference to `file:///var/folders/g_/4k204pzx6sg6gcnqc2bqfykxx8k880/T/c8eb79b9-eee9-4796-b374-4841ff18a27d.temp.3969925185320342713/tar-param.cwl`\r\n```\r\nI'm assuming `getMessage` does not work as expected here because the underlying `Throwable` comes from Python.\r\n\r\nI did try `t.value.getMessage` to potentially trim down the stack trace, but that's also 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