{"action":"created","issue":{"url":"https://api.github.com/repos/PreibischLab/BigStitcher/issues/24","repository_url":"https://api.github.com/repos/PreibischLab/BigStitcher","labels_url":"https://api.github.com/repos/PreibischLab/BigStitcher/issues/24/labels{/name}","comments_url":"https://api.github.com/repos/PreibischLab/BigStitcher/issues/24/comments","events_url":"https://api.github.com/repos/PreibischLab/BigStitcher/issues/24/events","html_url":"https://github.com/PreibischLab/BigStitcher/issues/24","id":343601048,"node_id":"MDU6SXNzdWUzNDM2MDEwNDg=","number":24,"title":"NoSuchElementException with automatic loader","user":{"login":"StephanJanosch","id":11651596,"node_id":"MDQ6VXNlcjExNjUxNTk2","avatar_url":"https://avatars2.githubusercontent.com/u/11651596?v=4","gravatar_id":"","url":"https://api.github.com/users/StephanJanosch","html_url":"https://github.com/StephanJanosch","followers_url":"https://api.github.com/users/StephanJanosch/followers","following_url":"https://api.github.com/users/StephanJanosch/following{/other_user}","gists_url":"https://api.github.com/users/StephanJanosch/gists{/gist_id}","starred_url":"https://api.github.com/users/StephanJanosch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/StephanJanosch/subscriptions","organizations_url":"https://api.github.com/users/StephanJanosch/orgs","repos_url":"https://api.github.com/users/StephanJanosch/repos","events_url":"https://api.github.com/users/StephanJanosch/events{/privacy}","received_events_url":"https://api.github.com/users/StephanJanosch/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-23T11:53:37Z","updated_at":"2018-07-23T13:03:42Z","closed_at":null,"author_association":"NONE","body":"Happens on Windows and Linux.\r\n\r\nDataset: https://cloud.mpi-cbg.de/index.php/s/gfv7HhpXhAQlaTK\r\n\r\nConsole:\r\n\r\n```Including file \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh.tif in dataset.\r\nIncluding file \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh1.tif in dataset.\r\nIncluding file \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh2.tif in dataset.\r\nIncluding file \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh3.tif in dataset.\r\nIncluding file \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh4.tif in dataset.\r\nFluoviewReader initializing \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh.tif\r\nReading IFDs\r\nPopulating metadata\r\nPopulating OME metadata\r\nFluoviewReader initializing \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh1.tif\r\nReading IFDs\r\nPopulating metadata\r\nPopulating OME metadata\r\nFluoviewReader initializing \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh2.tif\r\nReading IFDs\r\nPopulating metadata\r\nPopulating OME metadata\r\nFluoviewReader initializing \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh3.tif\r\nReading IFDs\r\nPopulating metadata\r\nPopulating OME metadata\r\nFluoviewReader initializing \\\\fileserver.mpi-cbg.de\\SarovHFSP\\2018-07-19_steph\\nip2-gfp_his72-mCh_his58_mCh_TRG_1668\\Worm5_L3\\nip2-gfp_his72-mCh_his58-mCh4.tif\r\nReading IFDs\r\nPopulating metadata\r\nPopulating OME metadata\r\nVS: 0\r\nError: more than one View: ch0 a0 ti0 tp0 i0\r\nVS: 0\r\nError: more than one View: ch1 a0 ti0 tp0 i0\r\nVS: 0\r\nError: more than one View: ch2 a0 ti0 tp0 i0\r\ntrue\r\n[ERROR] Module threw exception\r\njava.util.NoSuchElementException\r\n\tat java.util.HashMap$HashIterator.nextNode(HashMap.java:1444)\r\n\tat java.util.HashMap$KeyIterator.next(HashMap.java:1466)\r\n\tat net.preibisch.mvrecon.fiji.datasetmanager.FileListDatasetDefinition.createDataset(FileListDatasetDefinition.java:952)\r\n\tat net.preibisch.mvrecon.fiji.plugin.Define_Multi_View_Dataset.defineDataset(Define_Multi_View_Dataset.java:141)\r\n\tat net.preibisch.mvrecon.fiji.plugin.queryXML.LoadParseQueryXML.queryXML(LoadParseQueryXML.java:122)\r\n\tat net.preibisch.mvrecon.fiji.plugin.queryXML.LoadParseQueryXML.queryXML(LoadParseQueryXML.java:109)\r\n\tat net.preibisch.stitcher.plugin.BigStitcher.run(BigStitcher.java:74)\r\n\tat org.scijava.command.CommandModule.run(CommandModule.java:199)\r\n\tat org.scijava.module.ModuleRunner.run(ModuleRunner.java:168)\r\n\tat org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)\r\n\tat org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)\r\n\tat org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:238)\r\n\tat java.util.concurrent.FutureTask.run(FutureTask.java:266)\r\n\tat java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)\r\n\tat java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)\r\n\tat java.lang.Thread.run(Thread.java:748)\r\n```\r\nFiji and Files\r\n![win_bug_1_1](https://user-images.githubusercontent.com/11651596/43074825-e341fffc-8e7e-11e8-8ee5-fca29b14c43a.png)\r\nproper files found\r\n![win_bug_1_2](https://user-images.githubusercontent.com/11651596/43074828-e51e922c-8e7e-11e8-85d1-77584c0a5ffe.png)\r\nmetadata looks good \r\n![win_bug_1_3](https://user-images.githubusercontent.com/11651596/43074832-e675677c-8e7e-11e8-9a96-ecc7e307fcc4.png)\r\nand crash\r\n![win_bug_1_4](https://user-images.githubusercontent.com/11651596/43074833-e7b56966-8e7e-11e8-9e2b-205065549039.png)\r\n"},"comment":{"url":"https://api.github.com/repos/PreibischLab/BigStitcher/issues/comments/407050506","html_url":"https://github.com/PreibischLab/BigStitcher/issues/24#issuecomment-407050506","issue_url":"https://api.github.com/repos/PreibischLab/BigStitcher/issues/24","id":407050506,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzA1MDUwNg==","user":{"login":"StephanJanosch","id":11651596,"node_id":"MDQ6VXNlcjExNjUxNTk2","avatar_url":"https://avatars2.githubusercontent.com/u/11651596?v=4","gravatar_id":"","url":"https://api.github.com/users/StephanJanosch","html_url":"https://github.com/StephanJanosch","followers_url":"https://api.github.com/users/StephanJanosch/followers","following_url":"https://api.github.com/users/StephanJanosch/following{/other_user}","gists_url":"https://api.github.com/users/StephanJanosch/gists{/gist_id}","starred_url":"https://api.github.com/users/StephanJanosch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/StephanJanosch/subscriptions","organizations_url":"https://api.github.com/users/StephanJanosch/orgs","repos_url":"https://api.github.com/users/StephanJanosch/repos","events_url":"https://api.github.com/users/StephanJanosch/events{/privacy}","received_events_url":"https://api.github.com/users/StephanJanosch/received_events","type":"User","site_admin":false},"created_at":"2018-07-23T13:03:42Z","updated_at":"2018-07-23T13:03:42Z","author_association":"NONE","body":"Problem found: If I rename nip2-gfp_his72-mCh_his58-mCh.tif to nip2-gfp_his72-mCh_his58-mCh**0**.tif than the automatic loader works.\r\n\r\nIt's the code which tries to find the tiles pattern. It does not take into account that the first tile has no number. Renaming the file does not trigger this issue. \r\n\r\nThe microscope names these file like this."}}
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