{"action":"created","issue":{"url":"https://api.github.com/repos/SBRG/bigg_models/issues/324","repository_url":"https://api.github.com/repos/SBRG/bigg_models","labels_url":"https://api.github.com/repos/SBRG/bigg_models/issues/324/labels{/name}","comments_url":"https://api.github.com/repos/SBRG/bigg_models/issues/324/comments","events_url":"https://api.github.com/repos/SBRG/bigg_models/issues/324/events","html_url":"https://github.com/SBRG/bigg_models/issues/324","id":377461595,"node_id":"MDU6SXNzdWUzNzc0NjE1OTU=","number":324,"title":"Discrepancy in E. Coli core","user":{"login":"tjclement","id":5928359,"node_id":"MDQ6VXNlcjU5MjgzNTk=","avatar_url":"https://avatars3.githubusercontent.com/u/5928359?v=4","gravatar_id":"","url":"https://api.github.com/users/tjclement","html_url":"https://github.com/tjclement","followers_url":"https://api.github.com/users/tjclement/followers","following_url":"https://api.github.com/users/tjclement/following{/other_user}","gists_url":"https://api.github.com/users/tjclement/gists{/gist_id}","starred_url":"https://api.github.com/users/tjclement/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/tjclement/subscriptions","organizations_url":"https://api.github.com/users/tjclement/orgs","repos_url":"https://api.github.com/users/tjclement/repos","events_url":"https://api.github.com/users/tjclement/events{/privacy}","received_events_url":"https://api.github.com/users/tjclement/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-11-05T15:52:51Z","updated_at":"2018-11-05T20:42:04Z","closed_at":null,"author_association":"NONE","body":"# Description of the issue\r\nIn E. Coli core, the \"Formate transport via diffusion\" reaction is marked as reversible in the SBML file, whereas it is marked as **irreversible** in the Matlab file. I assume one of the two is erroneous.\r\n\r\n\r\n# Page\r\nhttp://bigg.ucsd.edu/models/e_coli_core\r\n# Browser\r\nMozilla/5.0 (Macintosh; Intel Mac OS X 10_14) AppleWebKit/605.1.15 (KHTML, like Gecko) Version/12.0 Safari/605.1.15"},"comment":{"url":"https://api.github.com/repos/SBRG/bigg_models/issues/comments/436027357","html_url":"https://github.com/SBRG/bigg_models/issues/324#issuecomment-436027357","issue_url":"https://api.github.com/repos/SBRG/bigg_models/issues/324","id":436027357,"node_id":"MDEyOklzc3VlQ29tbWVudDQzNjAyNzM1Nw==","user":{"login":"draeger","id":1740827,"node_id":"MDQ6VXNlcjE3NDA4Mjc=","avatar_url":"https://avatars2.githubusercontent.com/u/1740827?v=4","gravatar_id":"","url":"https://api.github.com/users/draeger","html_url":"https://github.com/draeger","followers_url":"https://api.github.com/users/draeger/followers","following_url":"https://api.github.com/users/draeger/following{/other_user}","gists_url":"https://api.github.com/users/draeger/gists{/gist_id}","starred_url":"https://api.github.com/users/draeger/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/draeger/subscriptions","organizations_url":"https://api.github.com/users/draeger/orgs","repos_url":"https://api.github.com/users/draeger/repos","events_url":"https://api.github.com/users/draeger/events{/privacy}","received_events_url":"https://api.github.com/users/draeger/received_events","type":"User","site_admin":false},"created_at":"2018-11-05T20:42:04Z","updated_at":"2018-11-05T20:42:04Z","author_association":"NONE","body":"Thanks for checking. As I see it, that's the only \"trick\" we can do in the SBML version, unless flipping reactants and products is acceptable, too. I think we can mark this issue as solved because this is just about how SBML is defined. But thanks for pointing this out! Maybe this solution for the SBML export should be communicated in some central FAQ somewhere."}}
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