{"action":"created","issue":{"url":"https://api.github.com/repos/debbiemarkslab/EVcouplings/issues/138","repository_url":"https://api.github.com/repos/debbiemarkslab/EVcouplings","labels_url":"https://api.github.com/repos/debbiemarkslab/EVcouplings/issues/138/labels{/name}","comments_url":"https://api.github.com/repos/debbiemarkslab/EVcouplings/issues/138/comments","events_url":"https://api.github.com/repos/debbiemarkslab/EVcouplings/issues/138/events","html_url":"https://github.com/debbiemarkslab/EVcouplings/issues/138","id":301794665,"number":138,"title":"bug running pipeline on O2","user":{"login":"rohanmaddamsetti","id":6401836,"avatar_url":"https://avatars1.githubusercontent.com/u/6401836?v=4","gravatar_id":"","url":"https://api.github.com/users/rohanmaddamsetti","html_url":"https://github.com/rohanmaddamsetti","followers_url":"https://api.github.com/users/rohanmaddamsetti/followers","following_url":"https://api.github.com/users/rohanmaddamsetti/following{/other_user}","gists_url":"https://api.github.com/users/rohanmaddamsetti/gists{/gist_id}","starred_url":"https://api.github.com/users/rohanmaddamsetti/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rohanmaddamsetti/subscriptions","organizations_url":"https://api.github.com/users/rohanmaddamsetti/orgs","repos_url":"https://api.github.com/users/rohanmaddamsetti/repos","events_url":"https://api.github.com/users/rohanmaddamsetti/events{/privacy}","received_events_url":"https://api.github.com/users/rohanmaddamsetti/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-03-02T15:01:11Z","updated_at":"2018-03-02T17:12:55Z","closed_at":null,"author_association":"NONE","body":"I get this error message:\r\n\r\nTraceback (most recent call last):\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/scope.py\", line 179, in resolve\r\n    return self.resolvers[key]\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/collections/__init__.py\", line 881, in __getitem__\r\n    return self.__missing__(key)            # support subclasses that define __missing__\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/collections/__init__.py\", line 873, in __missing__\r\n    raise KeyError(key)\r\nKeyError: 'probability'\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/scope.py\", line 190, in resolve\r\n    return self.temps[key]\r\nKeyError: 'probability'\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/evcouplings/utils/pipeline.py\", line 454, in execute_wrapped\r\n    outcfg = execute(**config)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/evcouplings/utils/pipeline.py\", line 174, in execute\r\n    outcfg = runner(**incfg)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/evcouplings/compare/protocol.py\", line 1022, in run\r\n    return PROTOCOLS[kwargs[\"protocol\"]](**kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/evcouplings/compare/protocol.py\", line 630, in standard\r\n    ec_table, d_intra, d_multimer, **kwargs\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/evcouplings/compare/protocol.py\", line 207, in _make_contact_maps\r\n    ec_set = ecs_longrange.query(\"probability >= @c\")\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/frame.py\", line 2116, in query\r\n    res = self.eval(expr, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/frame.py\", line 2186, in eval\r\n    return _eval(expr, inplace=inplace, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/eval.py\", line 262, in eval\r\n    truediv=truediv)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 727, in __init__\r\n    self.terms = self.parse()\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 744, in parse\r\n    return self._visitor.visit(self.expr)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 313, in visit\r\n    return visitor(node, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 319, in visit_Module\r\n    return self.visit(expr, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 313, in visit\r\n    return visitor(node, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 322, in visit_Expr\r\n    return self.visit(node.value, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 313, in visit\r\n    return visitor(node, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 644, in visit_Compare\r\n    return self.visit(binop)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 313, in visit\r\n    return visitor(node, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 416, in visit_BinOp\r\n    op, op_class, left, right = self._maybe_transform_eq_ne(node)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 354, in _maybe_transform_eq_ne\r\n    left = self.visit(node.left, side='left')\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 313, in visit\r\n    return visitor(node, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/expr.py\", line 430, in visit_Name\r\n    return self.term_type(node.id, self.env, **kwargs)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/ops.py\", line 58, in __init__\r\n    self._value = self._resolve_name()\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/ops.py\", line 75, in _resolve_name\r\n    res = self.env.resolve(self.local_name, is_local=self.is_local)\r\n  File \"/n/groups/marks/software/anaconda_o2/envs/evcouplings_o2/lib/python3.5/site-packages/pandas/core/computation/scope.py\", line 192, in resolve\r\n    raise compu.ops.UndefinedVariableError(key, is_local)\r\npandas.core.computation.ops.UndefinedVariableError: name 'probability' is not defined"},"comment":{"url":"https://api.github.com/repos/debbiemarkslab/EVcouplings/issues/comments/369987001","html_url":"https://github.com/debbiemarkslab/EVcouplings/issues/138#issuecomment-369987001","issue_url":"https://api.github.com/repos/debbiemarkslab/EVcouplings/issues/138","id":369987001,"user":{"login":"rohanmaddamsetti","id":6401836,"avatar_url":"https://avatars1.githubusercontent.com/u/6401836?v=4","gravatar_id":"","url":"https://api.github.com/users/rohanmaddamsetti","html_url":"https://github.com/rohanmaddamsetti","followers_url":"https://api.github.com/users/rohanmaddamsetti/followers","following_url":"https://api.github.com/users/rohanmaddamsetti/following{/other_user}","gists_url":"https://api.github.com/users/rohanmaddamsetti/gists{/gist_id}","starred_url":"https://api.github.com/users/rohanmaddamsetti/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rohanmaddamsetti/subscriptions","organizations_url":"https://api.github.com/users/rohanmaddamsetti/orgs","repos_url":"https://api.github.com/users/rohanmaddamsetti/repos","events_url":"https://api.github.com/users/rohanmaddamsetti/events{/privacy}","received_events_url":"https://api.github.com/users/rohanmaddamsetti/received_events","type":"User","site_admin":false},"created_at":"2018-03-02T17:12:55Z","updated_at":"2018-03-02T17:12:55Z","author_association":"NONE","body":"When I change the env to evcouplings_stable or evcouplings_develop I get the following error:\r\n\r\nTraceback (most recent call last):\r\n  File \"/n/groups/marks/software/anaconda_o2/bin/evcouplings\", line 11, in <module>\r\n    load_entry_point('evcouplings==0.0.2', 'console_scripts', 'evcouplings')()\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/pkg_resources/__init__.py\", line 565, in load_entry_point\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/pkg_resources/__init__.py\", line 2598, in load_entry_point\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/pkg_resources/__init__.py\", line 2258, in load\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/setuptools-27.2.0-py3.6.egg/pkg_resources/__init__.py\", line 2264, in resolve\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/evcouplings/utils/app.py\", line 21, in <module>\r\n    import evcouplings.management.computeJob\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/evcouplings/management/__init__.py\", line 1, in <module>\r\n    from evcouplings.management.protocol import *\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/evcouplings/management/protocol.py\", line 2, in <module>\r\n    from evcouplings.management.dumper import get_dumper\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/evcouplings/management/dumper/__init__.py\", line 1, in <module>\r\n    from evcouplings.management.dumper.AzureDumper import AzureDumper\r\n  File \"/n/groups/marks/software/anaconda_o2/lib/python3.6/site-packages/evcouplings/management/dumper/AzureDumper.py\", line 4, in <module>\r\n    from azure.storage.blob import BlockBlobService, ContentSettings, PublicAccess\r\nModuleNotFoundError: No module named 'azure'"}}
{"actor":{"display_login":"rohanmaddamsetti"}}