{"action":"created","issue":{"url":"https://api.github.com/repos/lh3/minimap2/issues/127","repository_url":"https://api.github.com/repos/lh3/minimap2","labels_url":"https://api.github.com/repos/lh3/minimap2/issues/127/labels{/name}","comments_url":"https://api.github.com/repos/lh3/minimap2/issues/127/comments","events_url":"https://api.github.com/repos/lh3/minimap2/issues/127/events","html_url":"https://github.com/lh3/minimap2/issues/127","id":300209941,"number":127,"title":"Compilation issue related to SSE instructions","user":{"login":"alexeigurevich","id":620893,"avatar_url":"https://avatars1.githubusercontent.com/u/620893?v=4","gravatar_id":"","url":"https://api.github.com/users/alexeigurevich","html_url":"https://github.com/alexeigurevich","followers_url":"https://api.github.com/users/alexeigurevich/followers","following_url":"https://api.github.com/users/alexeigurevich/following{/other_user}","gists_url":"https://api.github.com/users/alexeigurevich/gists{/gist_id}","starred_url":"https://api.github.com/users/alexeigurevich/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexeigurevich/subscriptions","organizations_url":"https://api.github.com/users/alexeigurevich/orgs","repos_url":"https://api.github.com/users/alexeigurevich/repos","events_url":"https://api.github.com/users/alexeigurevich/events{/privacy}","received_events_url":"https://api.github.com/users/alexeigurevich/received_events","type":"User","site_admin":false},"labels":[{"id":649711878,"url":"https://api.github.com/repos/lh3/minimap2/labels/bug","name":"bug","color":"ee0701","default":true}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-02-26T11:56:27Z","updated_at":"2018-02-26T15:29:07Z","closed_at":"2018-02-26T15:29:07Z","author_association":"NONE","body":"Hi Heng,\r\n\r\nI've just tested minimap2 compilation in various settings and found a small issue on Ubuntu 32bit virtual machine with GCC 5.2.1.\r\nInitially, I got a bunch of errors like:\r\n```\r\nIn file included from ksw2_ll_sse.c:4:0:\r\n/usr/lib/gcc/i686-linux-gnu/5/include/emmintrin.h:1180:1: error: inlining failed in call to always_inline ‘_mm_srli_si128’: target specific option mismatch\r\n _mm_srli_si128 (__m128i __A, const int __N)\r\n ^\r\n```\r\n\r\nFirst, I tried the suggested solution from README file and ran `make sse2only=1`. However, this did not help. Note that the errors are occurring during `ksw2_ll_sse.o` compilation which is required independently from `sse2only` value. \r\n\r\nThe solution which helped me was to update `Makefile` first line\r\n`CFLAGS=         -g -Wall -O2 -Wc++-compat`\r\nwith one more option: `-msse2` (it also works with some other alternatives, e.g. `-msse4.1`).\r\n\r\nDo you think it make sense to add this or similar option to `Makefile` permanently?"},"comment":{"url":"https://api.github.com/repos/lh3/minimap2/issues/comments/368540365","html_url":"https://github.com/lh3/minimap2/issues/127#issuecomment-368540365","issue_url":"https://api.github.com/repos/lh3/minimap2/issues/127","id":368540365,"user":{"login":"alexeigurevich","id":620893,"avatar_url":"https://avatars1.githubusercontent.com/u/620893?v=4","gravatar_id":"","url":"https://api.github.com/users/alexeigurevich","html_url":"https://github.com/alexeigurevich","followers_url":"https://api.github.com/users/alexeigurevich/followers","following_url":"https://api.github.com/users/alexeigurevich/following{/other_user}","gists_url":"https://api.github.com/users/alexeigurevich/gists{/gist_id}","starred_url":"https://api.github.com/users/alexeigurevich/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexeigurevich/subscriptions","organizations_url":"https://api.github.com/users/alexeigurevich/orgs","repos_url":"https://api.github.com/users/alexeigurevich/repos","events_url":"https://api.github.com/users/alexeigurevich/events{/privacy}","received_events_url":"https://api.github.com/users/alexeigurevich/received_events","type":"User","site_admin":false},"created_at":"2018-02-26T15:29:07Z","updated_at":"2018-02-26T15:29:07Z","author_association":"NONE","body":"Now it working, thanks!"}}
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