{"action":"created","issue":{"url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator/issues/32","repository_url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator","labels_url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator/issues/32/labels{/name}","comments_url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator/issues/32/comments","events_url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator/issues/32/events","html_url":"https://github.com/fraenkel-lab/OmicsIntegrator/issues/32","id":377149867,"node_id":"MDU6SXNzdWUzNzcxNDk4Njc=","number":32,"title":"git clone of repo fails","user":{"login":"sgosline","id":1847866,"node_id":"MDQ6VXNlcjE4NDc4NjY=","avatar_url":"https://avatars0.githubusercontent.com/u/1847866?v=4","gravatar_id":"","url":"https://api.github.com/users/sgosline","html_url":"https://github.com/sgosline","followers_url":"https://api.github.com/users/sgosline/followers","following_url":"https://api.github.com/users/sgosline/following{/other_user}","gists_url":"https://api.github.com/users/sgosline/gists{/gist_id}","starred_url":"https://api.github.com/users/sgosline/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sgosline/subscriptions","organizations_url":"https://api.github.com/users/sgosline/orgs","repos_url":"https://api.github.com/users/sgosline/repos","events_url":"https://api.github.com/users/sgosline/events{/privacy}","received_events_url":"https://api.github.com/users/sgosline/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-11-04T12:53:45Z","updated_at":"2018-11-04T13:32:57Z","closed_at":null,"author_association":"COLLABORATOR","body":"Filing this here, in case it's something with my configuration and/or location.\r\n\r\nI'm trying to do a git clone of the repo from Europe. I have git v. 2.17.1 on mac OSx (mojave).\r\n```\r\nDownloading dist/OmicsIntegrator-0.3.1.tar.gz (562.57 MB)\r\nError accessing media: dist/OmicsIntegrator-0.3.1.tar.gz (56364cf3296bc88b5b21ac2c3fd0a46f48b063e7c4aa1adb4297ba7d1a3c5b13)\r\nfatal error: unexpected signal during runtime execution\r\n[signal 0xb code=0x1 addr=0xb01dfacedebac1e pc=0xcc680]\r\n\r\ngoroutine 1 [running]:\r\nruntime.throw(0x50c640, 0x2a)\r\n\t/usr/local/go/src/runtime/panic.go:527 +0x90 fp=0xc8202094a8 sp=0xc820209490\r\nruntime.sigpanic()\r\n\t/usr/local/go/src/runtime/sigpanic_unix.go:12 +0x5a fp=0xc8202094f8 sp=0xc8202094a8\r\nsync.(*Pool).Get(0x6b2820, 0x0, 0x0)\r\n\t/usr/local/go/src/sync/pool.go:101 +0x40 fp=0xc820209548 sp=0xc8202094f8\r\nfmt.newPrinter(0xc82006df70)\r\n\t/usr/local/go/src/fmt/print.go:133 +0x27 fp=0xc820209588 sp=0xc820209548\r\nfmt.Fprintln(0xc641c0, 0xc820032018, 0xc820209718, 0x1, 0x1, 0x542979, 0x0, 0x0)\r\n\t/usr/local/go/src/fmt/print.go:253 +0x2d fp=0xc8202095d0 sp=0xc820209588\r\ngithub.com/github/git-lfs/commands.logPanicToWriter(0xc641c0, 0xc820032018, 0x7ba2f0, 0xc82000e370)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/commands/commands.go:160 +0x1e9 fp=0xc820209868 sp=0xc8202095d0\r\ngithub.com/github/git-lfs/commands.logPanic(0x7ba2f0, 0xc82000e370, 0x0, 0x0)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/commands/commands.go:148 +0x421 fp=0xc8202099e8 sp=0xc820209868\r\ngithub.com/github/git-lfs/commands.handlePanic(0x7ba2f0, 0xc82000e370, 0x0, 0x0)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/commands/commands.go:123 +0x4e fp=0xc820209a10 sp=0xc8202099e8\r\ngithub.com/github/git-lfs/commands.LoggedError(0x7ba2f0, 0xc82000e370, 0x4db960, 0x1e, 0xc820209d00, 0x2, 0x2)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/commands/commands.go:73 +0x82 fp=0xc820209ad8 sp=0xc820209a10\r\ngithub.com/github/git-lfs/commands.smudgeCommand(0x6aeee0, 0xc82006d7e0, 0x1, 0x1)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/commands/command_smudge.go:78 +0xd56 fp=0xc820209d48 sp=0xc820209ad8\r\ngithub.com/github/git-lfs/vendor/_nuts/github.com/spf13/cobra.(*Command).execute(0x6aeee0, 0xc82006d730, 0x1, 0x1, 0x0, 0x0)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/vendor/_nuts/github.com/spf13/cobra/command.go:477 +0x403 fp=0xc820209e10 sp=0xc820209d48\r\ngithub.com/github/git-lfs/vendor/_nuts/github.com/spf13/cobra.(*Command).Execute(0x6afbe0, 0x0, 0x0)\r\n\t/Users/rick/go/src/github.com/github/git-lfs/vendor/_nuts/github.com/spf13/cobra/command.go:551 +0x46a fp=0xc820209f18 sp=0xc820209e10\r\ngithub.com/github/git-lfs/commands.Run()\r\n\t/Users/rick/go/src/github.com/github/git-lfs/commands/commands.go:88 +0x23 fp=0xc820209f38 sp=0xc820209f18\r\nmain.main()\r\n\t/Users/rick/go/src/github.com/github/git-lfs/git-lfs.go:9 +0x14 fp=0xc820209f40 sp=0xc820209f38\r\nruntime.main()\r\n\t/usr/local/go/src/runtime/proc.go:111 +0x2b0 fp=0xc820209f90 sp=0xc820209f40\r\nruntime.goexit()\r\n\t/usr/local/go/src/runtime/asm_amd64.s:1696 +0x1 fp=0xc820209f98 sp=0xc820209f90\r\n\r\ngoroutine 17 [syscall, locked to thread]:\r\nruntime.goexit()\r\n\t/usr/local/go/src/runtime/asm_amd64.s:1696 +0x1\r\n\r\ngoroutine 5 [syscall, locked to thread]:\r\nnet._C2func_getaddrinfo(0xa00720, 0x0, 0xc8201f8030, 0xc8201fa000, 0x0, 0x0, 0x0)\r\n\t??:0 +0x4d\r\nnet.cgoLookupIPCNAME(0xc82006df40, 0xa, 0x0, 0x0, 0x0, 0x0, 0x0, 0x0, 0x0, 0x545a00)\r\n\t/usr/local/go/src/net/cgo_unix.go:111 +0x1ac\r\nnet.cgoLookupIP(0xc82006df40, 0xa, 0x0, 0x0, 0x0, 0x0, 0x0, 0x3e6240)\r\n\t/usr/local/go/src/net/cgo_unix.go:163 +0x56\r\nnet.lookupIP(0xc82006df40, 0xa, 0x0, 0x0, 0x0, 0x0, 0x0)\r\n\t/usr/local/go/src/net/lookup_unix.go:67 +0x94\r\nnet.glob.func15(0x545a50, 0xc82006df40, 0xa, 0x0, 0x0, 0x0, 0x0, 0x0)\r\n\t/usr/local/go/src/net/hook.go:10 +0x4d\r\nnet.lookupIPDeadline.func1(0x0, 0x0, 0x0, 0x0)\r\n\t/usr/local/go/src/net/lookup.go:106 +0x71\r\ninternal/singleflight.(*Group).doCall(0x6b23e0, 0xc8200102d0, 0xc82006df40, 0xa, 0xc820012300)\r\n\t/usr/local/go/src/internal/singleflight/singleflight.go:93 +0x2c\r\ncreated by internal/singleflight.(*Group).DoChan\r\n\t/usr/local/go/src/internal/singleflight/singleflight.go:86 +0x3ed\r\nerror: external filter 'git-lfs smudge %f' failed 2\r\nerror: external filter 'git-lfs smudge %f' failed\r\nfatal: dist/OmicsIntegrator-0.3.1.tar.gz: smudge filter lfs failed\r\n```\r\n\r\nHas anyone tried to do this lately? Is something awry with our git-lfs config? "},"comment":{"url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator/issues/comments/435670047","html_url":"https://github.com/fraenkel-lab/OmicsIntegrator/issues/32#issuecomment-435670047","issue_url":"https://api.github.com/repos/fraenkel-lab/OmicsIntegrator/issues/32","id":435670047,"node_id":"MDEyOklzc3VlQ29tbWVudDQzNTY3MDA0Nw==","user":{"login":"agitter","id":3532898,"node_id":"MDQ6VXNlcjM1MzI4OTg=","avatar_url":"https://avatars0.githubusercontent.com/u/3532898?v=4","gravatar_id":"","url":"https://api.github.com/users/agitter","html_url":"https://github.com/agitter","followers_url":"https://api.github.com/users/agitter/followers","following_url":"https://api.github.com/users/agitter/following{/other_user}","gists_url":"https://api.github.com/users/agitter/gists{/gist_id}","starred_url":"https://api.github.com/users/agitter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/agitter/subscriptions","organizations_url":"https://api.github.com/users/agitter/orgs","repos_url":"https://api.github.com/users/agitter/repos","events_url":"https://api.github.com/users/agitter/events{/privacy}","received_events_url":"https://api.github.com/users/agitter/received_events","type":"User","site_admin":false},"created_at":"2018-11-04T13:32:57Z","updated_at":"2018-11-04T13:32:57Z","author_association":"MEMBER","body":"I just tried a fresh clone of the repository and it worked for me (details below).  I'm running git bash on Windows 10 with the following versions of git and git-lfs\r\n```\r\n$ git-lfs env\r\ngit-lfs/1.4.1 (GitHub; windows amd64; go 1.7; git 2070e4c)\r\ngit version 2.9.2.windows.1\r\n```\r\n\r\nThe `git clone` on our last [Travis build](https://travis-ci.org/fraenkel-lab/OmicsIntegrator/builds/349516618#L421) also worked using git version 2.15.1 and go version 1.8.3.\r\n\r\nMy clone output\r\n```\r\n$ git clone https://github.com/fraenkel-lab/OmicsIntegrator.git\r\nCloning into 'OmicsIntegrator'...\r\nremote: Enumerating objects: 2472, done.\r\nremote: Total 2472 (delta 0), reused 0 (delta 0), pack-reused 2472\r\nReceiving objects: 100% (2472/2472), 258.45 MiB | 2.17 MiB/s, done.\r\nResolving deltas: 100% (870/870), done.\r\nChecking connectivity... done.\r\nDownloading dist/OmicsIntegrator-0.3.1.tar.gz (562.57 MB)\r\nDownloading dist/OmicsIntegrator-Examples.tar.gz (196.63 MB)\r\nDownloading example/dnaseClus/wgEncodeRegDnaseClusteredV2.fasta.gz (138.61 MB)\r\n```\r\n\r\nBased on your stack trace, could it be related to your version of go?"}}
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