{"action":"closed","issue":{"url":"https://api.github.com/repos/Shians/Glimma/issues/114","repository_url":"https://api.github.com/repos/Shians/Glimma","labels_url":"https://api.github.com/repos/Shians/Glimma/issues/114/labels{/name}","comments_url":"https://api.github.com/repos/Shians/Glimma/issues/114/comments","events_url":"https://api.github.com/repos/Shians/Glimma/issues/114/events","html_url":"https://github.com/Shians/Glimma/issues/114","id":215440683,"node_id":"MDU6SXNzdWUyMTU0NDA2ODM=","number":114,"title":"Unable to set xlab argument using glMDPlot.MArrayLM()","user":{"login":"gaiatek","id":1953555,"node_id":"MDQ6VXNlcjE5NTM1NTU=","avatar_url":"https://avatars1.githubusercontent.com/u/1953555?v=4","gravatar_id":"","url":"https://api.github.com/users/gaiatek","html_url":"https://github.com/gaiatek","followers_url":"https://api.github.com/users/gaiatek/followers","following_url":"https://api.github.com/users/gaiatek/following{/other_user}","gists_url":"https://api.github.com/users/gaiatek/gists{/gist_id}","starred_url":"https://api.github.com/users/gaiatek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gaiatek/subscriptions","organizations_url":"https://api.github.com/users/gaiatek/orgs","repos_url":"https://api.github.com/users/gaiatek/repos","events_url":"https://api.github.com/users/gaiatek/events{/privacy}","received_events_url":"https://api.github.com/users/gaiatek/received_events","type":"User","site_admin":false},"labels":[{"id":302543738,"node_id":"MDU6TGFiZWwzMDI1NDM3Mzg=","url":"https://api.github.com/repos/Shians/Glimma/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"closed","locked":false,"assignee":{"login":"Shians","id":6036662,"node_id":"MDQ6VXNlcjYwMzY2NjI=","avatar_url":"https://avatars1.githubusercontent.com/u/6036662?v=4","gravatar_id":"","url":"https://api.github.com/users/Shians","html_url":"https://github.com/Shians","followers_url":"https://api.github.com/users/Shians/followers","following_url":"https://api.github.com/users/Shians/following{/other_user}","gists_url":"https://api.github.com/users/Shians/gists{/gist_id}","starred_url":"https://api.github.com/users/Shians/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Shians/subscriptions","organizations_url":"https://api.github.com/users/Shians/orgs","repos_url":"https://api.github.com/users/Shians/repos","events_url":"https://api.github.com/users/Shians/events{/privacy}","received_events_url":"https://api.github.com/users/Shians/received_events","type":"User","site_admin":false},"assignees":[{"login":"Shians","id":6036662,"node_id":"MDQ6VXNlcjYwMzY2NjI=","avatar_url":"https://avatars1.githubusercontent.com/u/6036662?v=4","gravatar_id":"","url":"https://api.github.com/users/Shians","html_url":"https://github.com/Shians","followers_url":"https://api.github.com/users/Shians/followers","following_url":"https://api.github.com/users/Shians/following{/other_user}","gists_url":"https://api.github.com/users/Shians/gists{/gist_id}","starred_url":"https://api.github.com/users/Shians/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Shians/subscriptions","organizations_url":"https://api.github.com/users/Shians/orgs","repos_url":"https://api.github.com/users/Shians/repos","events_url":"https://api.github.com/users/Shians/events{/privacy}","received_events_url":"https://api.github.com/users/Shians/received_events","type":"User","site_admin":false}],"milestone":null,"comments":12,"created_at":"2017-03-20T14:38:23Z","updated_at":"2018-08-29T07:04:26Z","closed_at":"2018-08-29T07:04:25Z","author_association":"NONE","body":"Hi,\r\n\r\nWhen using glMDPlot on a microarray data set, I seem to be unable to modify the labels on the left panel (since expression data is not logCPM). It works well without setting the xlab argument, but when I try to change this label, I get the following error: \r\n\r\nError in glMDPlot.hidden(plotting.data, sample.exp, display.columns, search.by,  : \r\n  formal argument \"xlab\" matched by multiple actual arguments\r\n\r\nI can provide data if needed.\r\n\r\nThanks,\r\nJP\r\n\r\ncall (works if I exclude the xlab line) : \r\nglMDPlot(fit.all_v2, status=res2, anno=fData(eset.norm), coef=1, display.columns = fvarLabels(eset.norm)[c(2,4,6,9,10)],\r\n         xlab='Average log2 intensity',\r\n         id.column = 'Probe_Id', folder=paste0('Glimma-',colnames(fit.all_v2)[1]), groups=pData(eset.norm)$Class,\r\n         counts=exprs(eset.norm), side.ylab = 'Normalized log intensity',\r\n         transform = FALSE, samples=sampleNames(eset.norm))\r\n\r\n"}}
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