{"action":"opened","issue":{"url":"https://api.github.com/repos/arq5x/bedtools/issues/137","repository_url":"https://api.github.com/repos/arq5x/bedtools","labels_url":"https://api.github.com/repos/arq5x/bedtools/issues/137/labels{/name}","comments_url":"https://api.github.com/repos/arq5x/bedtools/issues/137/comments","events_url":"https://api.github.com/repos/arq5x/bedtools/issues/137/events","html_url":"https://github.com/arq5x/bedtools/issues/137","id":370798430,"node_id":"MDU6SXNzdWUzNzA3OTg0MzA=","number":137,"title":"coverageBed is not working properly","user":{"login":"khaled-rahman","id":9171336,"node_id":"MDQ6VXNlcjkxNzEzMzY=","avatar_url":"https://avatars0.githubusercontent.com/u/9171336?v=4","gravatar_id":"","url":"https://api.github.com/users/khaled-rahman","html_url":"https://github.com/khaled-rahman","followers_url":"https://api.github.com/users/khaled-rahman/followers","following_url":"https://api.github.com/users/khaled-rahman/following{/other_user}","gists_url":"https://api.github.com/users/khaled-rahman/gists{/gist_id}","starred_url":"https://api.github.com/users/khaled-rahman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/khaled-rahman/subscriptions","organizations_url":"https://api.github.com/users/khaled-rahman/orgs","repos_url":"https://api.github.com/users/khaled-rahman/repos","events_url":"https://api.github.com/users/khaled-rahman/events{/privacy}","received_events_url":"https://api.github.com/users/khaled-rahman/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-10-16T21:02:31Z","updated_at":"2018-10-16T21:02:31Z","closed_at":null,"author_association":"NONE","body":"In A.bed file I have:\r\nchr1\t0\t100\r\nchr1\t100\t200\r\nchr2\t0\t100\r\n\r\nIn B.bed file I have:\r\nchr1\t10\t20\r\nchr1\t20\t30\r\nchr1\t30\t40\r\nchr1\t100\t200\r\n\r\nWhen I ran:\r\ncoverageBed -a A.bed -b B.bed\r\n\r\nIt shows me following errors:\r\n***** ERROR: -counts, -d, -mean, and -hist are all mutually exclusive options. *****\r\n\r\nWhy is this happening?\r\n\r\nI have tried an earlier version (v2.25.0) which is installed on a server. Only that version is working. All latter versions I installed, or installed in other servers are not working. I have installed that v2.25.0 on a server but still this new installation is not working. It would be very helpful, you could respond."}}
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