{"action":"created","issue":{"url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/issues/426","repository_url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema","labels_url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/issues/426/labels{/name}","comments_url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/issues/426/comments","events_url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/issues/426/events","html_url":"https://github.com/HumanCellAtlas/metadata-schema/issues/426","id":341522913,"node_id":"MDU6SXNzdWUzNDE1MjI5MTM=","number":426,"title":"Usage of library_construction_approach to trigger analysis pipelines for different 10X prep versions","user":{"login":"hewgreen","id":23357242,"node_id":"MDQ6VXNlcjIzMzU3MjQy","avatar_url":"https://avatars0.githubusercontent.com/u/23357242?v=4","gravatar_id":"","url":"https://api.github.com/users/hewgreen","html_url":"https://github.com/hewgreen","followers_url":"https://api.github.com/users/hewgreen/followers","following_url":"https://api.github.com/users/hewgreen/following{/other_user}","gists_url":"https://api.github.com/users/hewgreen/gists{/gist_id}","starred_url":"https://api.github.com/users/hewgreen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hewgreen/subscriptions","organizations_url":"https://api.github.com/users/hewgreen/orgs","repos_url":"https://api.github.com/users/hewgreen/repos","events_url":"https://api.github.com/users/hewgreen/events{/privacy}","received_events_url":"https://api.github.com/users/hewgreen/received_events","type":"User","site_admin":false},"labels":[{"id":757956924,"node_id":"MDU6TGFiZWw3NTc5NTY5MjQ=","url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/labels/content","name":"content","color":"9e0135","default":false},{"id":683104175,"node_id":"MDU6TGFiZWw2ODMxMDQxNzU=","url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/labels/help%20wanted","name":"help wanted","color":"128A0C","default":true}],"state":"open","locked":false,"assignee":{"login":"malloryfreeberg","id":10993501,"node_id":"MDQ6VXNlcjEwOTkzNTAx","avatar_url":"https://avatars2.githubusercontent.com/u/10993501?v=4","gravatar_id":"","url":"https://api.github.com/users/malloryfreeberg","html_url":"https://github.com/malloryfreeberg","followers_url":"https://api.github.com/users/malloryfreeberg/followers","following_url":"https://api.github.com/users/malloryfreeberg/following{/other_user}","gists_url":"https://api.github.com/users/malloryfreeberg/gists{/gist_id}","starred_url":"https://api.github.com/users/malloryfreeberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/malloryfreeberg/subscriptions","organizations_url":"https://api.github.com/users/malloryfreeberg/orgs","repos_url":"https://api.github.com/users/malloryfreeberg/repos","events_url":"https://api.github.com/users/malloryfreeberg/events{/privacy}","received_events_url":"https://api.github.com/users/malloryfreeberg/received_events","type":"User","site_admin":false},"assignees":[{"login":"malloryfreeberg","id":10993501,"node_id":"MDQ6VXNlcjEwOTkzNTAx","avatar_url":"https://avatars2.githubusercontent.com/u/10993501?v=4","gravatar_id":"","url":"https://api.github.com/users/malloryfreeberg","html_url":"https://github.com/malloryfreeberg","followers_url":"https://api.github.com/users/malloryfreeberg/followers","following_url":"https://api.github.com/users/malloryfreeberg/following{/other_user}","gists_url":"https://api.github.com/users/malloryfreeberg/gists{/gist_id}","starred_url":"https://api.github.com/users/malloryfreeberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/malloryfreeberg/subscriptions","organizations_url":"https://api.github.com/users/malloryfreeberg/orgs","repos_url":"https://api.github.com/users/malloryfreeberg/repos","events_url":"https://api.github.com/users/malloryfreeberg/events{/privacy}","received_events_url":"https://api.github.com/users/malloryfreeberg/received_events","type":"User","site_admin":false}],"milestone":null,"comments":3,"created_at":"2018-07-16T13:39:01Z","updated_at":"2018-07-18T15:15:28Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"\r\nThe following field library_preparation_protocol.library_construction_approach.text, is an ontology field. However, I just realised for the ICA dataset the value entered is '10x_v2' but should presumably be 10X sequencing (EFO_0008995).\r\n\r\nDoes this change break the analysis box's trigger? (I presume yes)\r\nDo our analysis pipelines require knowledge of the version 'v2' to run? (presuming yes)\r\n\r\nIf so we should either:\r\n1. add to the ontology\r\n2. capture the 10X version in a different metadata field (in the 10X module)."},"comment":{"url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/issues/comments/405967747","html_url":"https://github.com/HumanCellAtlas/metadata-schema/issues/426#issuecomment-405967747","issue_url":"https://api.github.com/repos/HumanCellAtlas/metadata-schema/issues/426","id":405967747,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNTk2Nzc0Nw==","user":{"login":"ambrosejcarr","id":5239152,"node_id":"MDQ6VXNlcjUyMzkxNTI=","avatar_url":"https://avatars1.githubusercontent.com/u/5239152?v=4","gravatar_id":"","url":"https://api.github.com/users/ambrosejcarr","html_url":"https://github.com/ambrosejcarr","followers_url":"https://api.github.com/users/ambrosejcarr/followers","following_url":"https://api.github.com/users/ambrosejcarr/following{/other_user}","gists_url":"https://api.github.com/users/ambrosejcarr/gists{/gist_id}","starred_url":"https://api.github.com/users/ambrosejcarr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ambrosejcarr/subscriptions","organizations_url":"https://api.github.com/users/ambrosejcarr/orgs","repos_url":"https://api.github.com/users/ambrosejcarr/repos","events_url":"https://api.github.com/users/ambrosejcarr/events{/privacy}","received_events_url":"https://api.github.com/users/ambrosejcarr/received_events","type":"User","site_admin":false},"created_at":"2018-07-18T15:15:28Z","updated_at":"2018-07-18T15:15:28Z","author_association":"MEMBER","body":"> [snip] but I do believe the pipelines need to know that a 10x dataset is specifically from the v2 version of 10x. As such, I would recommend expanding the ontology being used here.\r\n\r\nCorrect. "}}
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