{"action":"created","issue":{"url":"https://api.github.com/repos/marbl/Krona/issues/95","repository_url":"https://api.github.com/repos/marbl/Krona","labels_url":"https://api.github.com/repos/marbl/Krona/issues/95/labels{/name}","comments_url":"https://api.github.com/repos/marbl/Krona/issues/95/comments","events_url":"https://api.github.com/repos/marbl/Krona/issues/95/events","html_url":"https://github.com/marbl/Krona/issues/95","id":341568167,"node_id":"MDU6SXNzdWUzNDE1NjgxNjc=","number":95,"title":"Error when using Krona to generate hierarchical representation of Tax4Fun output??","user":{"login":"emankhalaf","id":26454871,"node_id":"MDQ6VXNlcjI2NDU0ODcx","avatar_url":"https://avatars0.githubusercontent.com/u/26454871?v=4","gravatar_id":"","url":"https://api.github.com/users/emankhalaf","html_url":"https://github.com/emankhalaf","followers_url":"https://api.github.com/users/emankhalaf/followers","following_url":"https://api.github.com/users/emankhalaf/following{/other_user}","gists_url":"https://api.github.com/users/emankhalaf/gists{/gist_id}","starred_url":"https://api.github.com/users/emankhalaf/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/emankhalaf/subscriptions","organizations_url":"https://api.github.com/users/emankhalaf/orgs","repos_url":"https://api.github.com/users/emankhalaf/repos","events_url":"https://api.github.com/users/emankhalaf/events{/privacy}","received_events_url":"https://api.github.com/users/emankhalaf/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2018-07-16T15:30:49Z","updated_at":"2018-07-18T03:32:29Z","closed_at":null,"author_association":"NONE","body":"Hello everyone,\r\n\r\nI would like to use krona to display Tax4Fun output:\r\n0.008833584\tMetabolism\tcarbohydrate metabolism\tGlycolysis / Gluconeogenesis\r\n0.006236372\tMetabolism\tcarbohydrate metabolism\tCitrate cycle (TCA cycle)\r\n0.008593556\tMetabolism\tcarbohydrate metabolism\tPentose phosphate pathway\r\n0.005395773\tMetabolism\tcarbohydrate metabolism\tPentose and glucuronate interconversions\r\n\r\nI installed Krona as following:\r\ncurl -LOk https://github.com/marbl/Krona/releases/download/v2.7/KronaTools-2.7.tar\r\nsudo ./install.pl\r\nsudo ./updateTaxonomy.sh\r\nsudo ./updateAccessions.sh\r\n\r\nHowever, I am going to use krona with only regular data stored in text files (as above) not taxonomy files.\r\n\r\nI copied the files in kronaTools-2.7 folder and then use this command:\r\nktImportText control.text -o ctrl_krona.html\r\nI got this error:\r\nNo such file or directory at /usr/local/bin/ktImportText line 71.\r\n\r\nMay you please help me in solving this issue. Is there any mistake in the above steps?\r\n\r\nThanks"},"comment":{"url":"https://api.github.com/repos/marbl/Krona/issues/comments/405798027","html_url":"https://github.com/marbl/Krona/issues/95#issuecomment-405798027","issue_url":"https://api.github.com/repos/marbl/Krona/issues/95","id":405798027,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNTc5ODAyNw==","user":{"login":"deepthoughts","id":3029968,"node_id":"MDQ6VXNlcjMwMjk5Njg=","avatar_url":"https://avatars0.githubusercontent.com/u/3029968?v=4","gravatar_id":"","url":"https://api.github.com/users/deepthoughts","html_url":"https://github.com/deepthoughts","followers_url":"https://api.github.com/users/deepthoughts/followers","following_url":"https://api.github.com/users/deepthoughts/following{/other_user}","gists_url":"https://api.github.com/users/deepthoughts/gists{/gist_id}","starred_url":"https://api.github.com/users/deepthoughts/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/deepthoughts/subscriptions","organizations_url":"https://api.github.com/users/deepthoughts/orgs","repos_url":"https://api.github.com/users/deepthoughts/repos","events_url":"https://api.github.com/users/deepthoughts/events{/privacy}","received_events_url":"https://api.github.com/users/deepthoughts/received_events","type":"User","site_admin":false},"created_at":"2018-07-18T03:32:29Z","updated_at":"2018-07-18T03:32:29Z","author_association":"NONE","body":"Can you try the included example with Krona?\r\nhttps://github.com/marbl/Krona/wiki/Importing-text-and-XML-data\r\n"}}
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