{"action":"created","issue":{"url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/67","repository_url":"https://api.github.com/repos/bioinformatics-centre/kaiju","labels_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/67/labels{/name}","comments_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/67/comments","events_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/67/events","html_url":"https://github.com/bioinformatics-centre/kaiju/issues/67","id":321713328,"number":67,"title":"which database to use","user":{"login":"chloelulu","id":28763565,"avatar_url":"https://avatars0.githubusercontent.com/u/28763565?v=4","gravatar_id":"","url":"https://api.github.com/users/chloelulu","html_url":"https://github.com/chloelulu","followers_url":"https://api.github.com/users/chloelulu/followers","following_url":"https://api.github.com/users/chloelulu/following{/other_user}","gists_url":"https://api.github.com/users/chloelulu/gists{/gist_id}","starred_url":"https://api.github.com/users/chloelulu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chloelulu/subscriptions","organizations_url":"https://api.github.com/users/chloelulu/orgs","repos_url":"https://api.github.com/users/chloelulu/repos","events_url":"https://api.github.com/users/chloelulu/events{/privacy}","received_events_url":"https://api.github.com/users/chloelulu/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-05-09T20:23:35Z","updated_at":"2018-05-11T08:29:31Z","closed_at":"2018-05-11T08:29:31Z","author_association":"NONE","body":"Hi, \r\nI saw there are five database in Kaiju http://kaiju.binf.ku.dk/server\r\nI plan to use Kaijun to analysis the shotgun metagenomics data with 100bp pair-ended reads(Hiseq). I am wondering which to use. I just want to classify bacteria and archaea. Confusing. \r\nI have used kraken, only 3% of the reads can got hits. So I want to try Kaiju, since as it published in the paper, which showed much more hits of reads for environmental samples.\r\nThanks in advanced. "},"comment":{"url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/comments/388297978","html_url":"https://github.com/bioinformatics-centre/kaiju/issues/67#issuecomment-388297978","issue_url":"https://api.github.com/repos/bioinformatics-centre/kaiju/issues/67","id":388297978,"user":{"login":"pmenzel","id":1469600,"avatar_url":"https://avatars2.githubusercontent.com/u/1469600?v=4","gravatar_id":"","url":"https://api.github.com/users/pmenzel","html_url":"https://github.com/pmenzel","followers_url":"https://api.github.com/users/pmenzel/followers","following_url":"https://api.github.com/users/pmenzel/following{/other_user}","gists_url":"https://api.github.com/users/pmenzel/gists{/gist_id}","starred_url":"https://api.github.com/users/pmenzel/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pmenzel/subscriptions","organizations_url":"https://api.github.com/users/pmenzel/orgs","repos_url":"https://api.github.com/users/pmenzel/repos","events_url":"https://api.github.com/users/pmenzel/events{/privacy}","received_events_url":"https://api.github.com/users/pmenzel/received_events","type":"User","site_admin":false},"created_at":"2018-05-11T08:29:31Z","updated_at":"2018-05-11T08:29:31Z","author_association":"CONTRIBUTOR","body":"Hi,\r\nif you are just interested in bacteria and Archaea, then just use the \"NCBI BLAST nr\" database."}}
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