{"action":"opened","number":231,"pull_request":{"url":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/231","id":225270387,"node_id":"MDExOlB1bGxSZXF1ZXN0MjI1MjcwMzg3","html_url":"https://github.com/bmeg/bmeg-etl/pull/231","diff_url":"https://github.com/bmeg/bmeg-etl/pull/231.diff","patch_url":"https://github.com/bmeg/bmeg-etl/pull/231.patch","issue_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues/231","number":231,"state":"open","locked":false,"title":"Missing vertexes","user":{"login":"bwalsh","id":47808,"node_id":"MDQ6VXNlcjQ3ODA4","avatar_url":"https://avatars1.githubusercontent.com/u/47808?v=4","gravatar_id":"","url":"https://api.github.com/users/bwalsh","html_url":"https://github.com/bwalsh","followers_url":"https://api.github.com/users/bwalsh/followers","following_url":"https://api.github.com/users/bwalsh/following{/other_user}","gists_url":"https://api.github.com/users/bwalsh/gists{/gist_id}","starred_url":"https://api.github.com/users/bwalsh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bwalsh/subscriptions","organizations_url":"https://api.github.com/users/bwalsh/orgs","repos_url":"https://api.github.com/users/bwalsh/repos","events_url":"https://api.github.com/users/bwalsh/events{/privacy}","received_events_url":"https://api.github.com/users/bwalsh/received_events","type":"User","site_admin":false},"body":"This PR contains several bug fixes, primarily directed at resolving missing relationships.\r\n\r\n\r\n\r\n\r\nEdge | Comment | status\r\n-- | -- | --\r\nCOCAClusterFor | deprecated | wont fix\r\nHasGeneFeature | Gene not   present in GRCh37 | wont   fix\r\nAlleleIn | Gene not   present in GRCh37 | wont fix\r\nGeneOntologyAnnotation | Gene not   present in GRCh37 | wont   fix\r\nProteinFor | missing Transcript ? |  \r\nPFAMClanMember | missing   vertex: PFAMClan | DONE   (handful of missing ids)\r\nStructureFor | missing vertex: ProteinStructure | DONE\r\nHasSupportingReference | missing vertex: Publication | DONE\r\n\r\n","created_at":"2018-10-24T05:36:54Z","updated_at":"2018-10-24T05:36:54Z","closed_at":null,"merged_at":null,"merge_commit_sha":null,"assignee":null,"assignees":[],"requested_reviewers":[],"requested_teams":[],"labels":[],"milestone":null,"commits_url":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/231/commits","review_comments_url":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/231/comments","review_comment_url":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/comments{/number}","comments_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues/231/comments","statuses_url":"https://api.github.com/repos/bmeg/bmeg-etl/statuses/7e2942376180771935645cb1573c1dace9592e30","head":{"label":"bmeg:missing_vertex","ref":"missing_vertex","sha":"7e2942376180771935645cb1573c1dace9592e30","user":{"login":"bmeg","id":18017181,"node_id":"MDEyOk9yZ2FuaXphdGlvbjE4MDE3MTgx","avatar_url":"https://avatars1.githubusercontent.com/u/18017181?v=4","gravatar_id":"","url":"https://api.github.com/users/bmeg","html_url":"https://github.com/bmeg","followers_url":"https://api.github.com/users/bmeg/followers","following_url":"https://api.github.com/users/bmeg/following{/other_user}","gists_url":"https://api.github.com/users/bmeg/gists{/gist_id}","starred_url":"https://api.github.com/users/bmeg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bmeg/subscriptions","organizations_url":"https://api.github.com/users/bmeg/orgs","repos_url":"https://api.github.com/users/bmeg/repos","events_url":"https://api.github.com/users/bmeg/events{/privacy}","received_events_url":"https://api.github.com/users/bmeg/received_events","type":"Organization","site_admin":false},"repo":{"id":108303536,"node_id":"MDEwOlJlcG9zaXRvcnkxMDgzMDM1MzY=","name":"bmeg-etl","full_name":"bmeg/bmeg-etl","private":false,"owner":{"login":"bmeg","id":18017181,"node_id":"MDEyOk9yZ2FuaXphdGlvbjE4MDE3MTgx","avatar_url":"https://avatars1.githubusercontent.com/u/18017181?v=4","gravatar_id":"","url":"https://api.github.com/users/bmeg","html_url":"https://github.com/bmeg","followers_url":"https://api.github.com/users/bmeg/followers","following_url":"https://api.github.com/users/bmeg/following{/other_user}","gists_url":"https://api.github.com/users/bmeg/gists{/gist_id}","starred_url":"https://api.github.com/users/bmeg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bmeg/subscriptions","organizations_url":"https://api.github.com/users/bmeg/orgs","repos_url":"https://api.github.com/users/bmeg/repos","events_url":"https://api.github.com/users/bmeg/events{/privacy}","received_events_url":"https://api.github.com/users/bmeg/received_events","type":"Organization","site_admin":false},"html_url":"https://github.com/bmeg/bmeg-etl","description":"ETL configuration for BMEG","fork":false,"url":"https://api.github.com/repos/bmeg/bmeg-etl","forks_url":"https://api.github.com/repos/bmeg/bmeg-etl/forks","keys_url":"https://api.github.com/repos/bmeg/bmeg-etl/keys{/key_id}","collaborators_url":"https://api.github.com/repos/bmeg/bmeg-etl/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/bmeg/bmeg-etl/teams","hooks_url":"https://api.github.com/repos/bmeg/bmeg-etl/hooks","issue_events_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues/events{/number}","events_url":"https://api.github.com/repos/bmeg/bmeg-etl/events","assignees_url":"https://api.github.com/repos/bmeg/bmeg-etl/assignees{/user}","branches_url":"https://api.github.com/repos/bmeg/bmeg-etl/branches{/branch}","tags_url":"https://api.github.com/repos/bmeg/bmeg-etl/tags","blobs_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/refs{/sha}","trees_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/trees{/sha}","statuses_url":"https://api.github.com/repos/bmeg/bmeg-etl/statuses/{sha}","languages_url":"https://api.github.com/repos/bmeg/bmeg-etl/languages","stargazers_url":"https://api.github.com/repos/bmeg/bmeg-etl/stargazers","contributors_url":"https://api.github.com/repos/bmeg/bmeg-etl/contributors","subscribers_url":"https://api.github.com/repos/bmeg/bmeg-etl/subscribers","subscription_url":"https://api.github.com/repos/bmeg/bmeg-etl/subscription","commits_url":"https://api.github.com/repos/bmeg/bmeg-etl/commits{/sha}","git_commits_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/commits{/sha}","comments_url":"https://api.github.com/repos/bmeg/bmeg-etl/comments{/number}","issue_comment_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues/comments{/number}","contents_url":"https://api.github.com/repos/bmeg/bmeg-etl/contents/{+path}","compare_url":"https://api.github.com/repos/bmeg/bmeg-etl/compare/{base}...{head}","merges_url":"https://api.github.com/repos/bmeg/bmeg-etl/merges","archive_url":"https://api.github.com/repos/bmeg/bmeg-etl/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/bmeg/bmeg-etl/downloads","issues_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues{/number}","pulls_url":"https://api.github.com/repos/bmeg/bmeg-etl/pulls{/number}","milestones_url":"https://api.github.com/repos/bmeg/bmeg-etl/milestones{/number}","notifications_url":"https://api.github.com/repos/bmeg/bmeg-etl/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/bmeg/bmeg-etl/labels{/name}","releases_url":"https://api.github.com/repos/bmeg/bmeg-etl/releases{/id}","deployments_url":"https://api.github.com/repos/bmeg/bmeg-etl/deployments","created_at":"2017-10-25T17:37:02Z","updated_at":"2018-10-11T17:29:02Z","pushed_at":"2018-10-24T05:33:04Z","git_url":"git://github.com/bmeg/bmeg-etl.git","ssh_url":"git@github.com:bmeg/bmeg-etl.git","clone_url":"https://github.com/bmeg/bmeg-etl.git","svn_url":"https://github.com/bmeg/bmeg-etl","homepage":null,"size":9889,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":false,"has_pages":false,"forks_count":2,"mirror_url":null,"archived":false,"open_issues_count":49,"license":null,"forks":2,"open_issues":49,"watchers":0,"default_branch":"master"}},"base":{"label":"bmeg:master","ref":"master","sha":"b047ca7645a0e5665251e89db5840f4c7497f68b","user":{"login":"bmeg","id":18017181,"node_id":"MDEyOk9yZ2FuaXphdGlvbjE4MDE3MTgx","avatar_url":"https://avatars1.githubusercontent.com/u/18017181?v=4","gravatar_id":"","url":"https://api.github.com/users/bmeg","html_url":"https://github.com/bmeg","followers_url":"https://api.github.com/users/bmeg/followers","following_url":"https://api.github.com/users/bmeg/following{/other_user}","gists_url":"https://api.github.com/users/bmeg/gists{/gist_id}","starred_url":"https://api.github.com/users/bmeg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bmeg/subscriptions","organizations_url":"https://api.github.com/users/bmeg/orgs","repos_url":"https://api.github.com/users/bmeg/repos","events_url":"https://api.github.com/users/bmeg/events{/privacy}","received_events_url":"https://api.github.com/users/bmeg/received_events","type":"Organization","site_admin":false},"repo":{"id":108303536,"node_id":"MDEwOlJlcG9zaXRvcnkxMDgzMDM1MzY=","name":"bmeg-etl","full_name":"bmeg/bmeg-etl","private":false,"owner":{"login":"bmeg","id":18017181,"node_id":"MDEyOk9yZ2FuaXphdGlvbjE4MDE3MTgx","avatar_url":"https://avatars1.githubusercontent.com/u/18017181?v=4","gravatar_id":"","url":"https://api.github.com/users/bmeg","html_url":"https://github.com/bmeg","followers_url":"https://api.github.com/users/bmeg/followers","following_url":"https://api.github.com/users/bmeg/following{/other_user}","gists_url":"https://api.github.com/users/bmeg/gists{/gist_id}","starred_url":"https://api.github.com/users/bmeg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bmeg/subscriptions","organizations_url":"https://api.github.com/users/bmeg/orgs","repos_url":"https://api.github.com/users/bmeg/repos","events_url":"https://api.github.com/users/bmeg/events{/privacy}","received_events_url":"https://api.github.com/users/bmeg/received_events","type":"Organization","site_admin":false},"html_url":"https://github.com/bmeg/bmeg-etl","description":"ETL configuration for BMEG","fork":false,"url":"https://api.github.com/repos/bmeg/bmeg-etl","forks_url":"https://api.github.com/repos/bmeg/bmeg-etl/forks","keys_url":"https://api.github.com/repos/bmeg/bmeg-etl/keys{/key_id}","collaborators_url":"https://api.github.com/repos/bmeg/bmeg-etl/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/bmeg/bmeg-etl/teams","hooks_url":"https://api.github.com/repos/bmeg/bmeg-etl/hooks","issue_events_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues/events{/number}","events_url":"https://api.github.com/repos/bmeg/bmeg-etl/events","assignees_url":"https://api.github.com/repos/bmeg/bmeg-etl/assignees{/user}","branches_url":"https://api.github.com/repos/bmeg/bmeg-etl/branches{/branch}","tags_url":"https://api.github.com/repos/bmeg/bmeg-etl/tags","blobs_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/refs{/sha}","trees_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/trees{/sha}","statuses_url":"https://api.github.com/repos/bmeg/bmeg-etl/statuses/{sha}","languages_url":"https://api.github.com/repos/bmeg/bmeg-etl/languages","stargazers_url":"https://api.github.com/repos/bmeg/bmeg-etl/stargazers","contributors_url":"https://api.github.com/repos/bmeg/bmeg-etl/contributors","subscribers_url":"https://api.github.com/repos/bmeg/bmeg-etl/subscribers","subscription_url":"https://api.github.com/repos/bmeg/bmeg-etl/subscription","commits_url":"https://api.github.com/repos/bmeg/bmeg-etl/commits{/sha}","git_commits_url":"https://api.github.com/repos/bmeg/bmeg-etl/git/commits{/sha}","comments_url":"https://api.github.com/repos/bmeg/bmeg-etl/comments{/number}","issue_comment_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues/comments{/number}","contents_url":"https://api.github.com/repos/bmeg/bmeg-etl/contents/{+path}","compare_url":"https://api.github.com/repos/bmeg/bmeg-etl/compare/{base}...{head}","merges_url":"https://api.github.com/repos/bmeg/bmeg-etl/merges","archive_url":"https://api.github.com/repos/bmeg/bmeg-etl/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/bmeg/bmeg-etl/downloads","issues_url":"https://api.github.com/repos/bmeg/bmeg-etl/issues{/number}","pulls_url":"https://api.github.com/repos/bmeg/bmeg-etl/pulls{/number}","milestones_url":"https://api.github.com/repos/bmeg/bmeg-etl/milestones{/number}","notifications_url":"https://api.github.com/repos/bmeg/bmeg-etl/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/bmeg/bmeg-etl/labels{/name}","releases_url":"https://api.github.com/repos/bmeg/bmeg-etl/releases{/id}","deployments_url":"https://api.github.com/repos/bmeg/bmeg-etl/deployments","created_at":"2017-10-25T17:37:02Z","updated_at":"2018-10-11T17:29:02Z","pushed_at":"2018-10-24T05:33:04Z","git_url":"git://github.com/bmeg/bmeg-etl.git","ssh_url":"git@github.com:bmeg/bmeg-etl.git","clone_url":"https://github.com/bmeg/bmeg-etl.git","svn_url":"https://github.com/bmeg/bmeg-etl","homepage":null,"size":9889,"stargazers_count":0,"watchers_count":0,"language":"Python","has_issues":true,"has_projects":true,"has_downloads":true,"has_wiki":false,"has_pages":false,"forks_count":2,"mirror_url":null,"archived":false,"open_issues_count":49,"license":null,"forks":2,"open_issues":49,"watchers":0,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/231"},"html":{"href":"https://github.com/bmeg/bmeg-etl/pull/231"},"issue":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/issues/231"},"comments":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/issues/231/comments"},"review_comments":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/231/comments"},"review_comment":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/comments{/number}"},"commits":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/pulls/231/commits"},"statuses":{"href":"https://api.github.com/repos/bmeg/bmeg-etl/statuses/7e2942376180771935645cb1573c1dace9592e30"}},"author_association":"COLLABORATOR","merged":false,"mergeable":null,"rebaseable":null,"mergeable_state":"unknown","merged_by":null,"comments":0,"review_comments":0,"maintainer_can_modify":false,"commits":7,"additions":92,"deletions":9,"changed_files":7}}
{"actor":{"display_login":"bwalsh"}}