{"action":"created","issue":{"url":"https://api.github.com/repos/renozao/NMF/issues/96","repository_url":"https://api.github.com/repos/renozao/NMF","labels_url":"https://api.github.com/repos/renozao/NMF/issues/96/labels{/name}","comments_url":"https://api.github.com/repos/renozao/NMF/issues/96/comments","events_url":"https://api.github.com/repos/renozao/NMF/issues/96/events","html_url":"https://github.com/renozao/NMF/issues/96","id":262771031,"number":96,"title":" Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :    object 'L_currentViewport' not found ","user":{"login":"kviljoen","id":9252016,"avatar_url":"https://avatars0.githubusercontent.com/u/9252016?v=4","gravatar_id":"","url":"https://api.github.com/users/kviljoen","html_url":"https://github.com/kviljoen","followers_url":"https://api.github.com/users/kviljoen/followers","following_url":"https://api.github.com/users/kviljoen/following{/other_user}","gists_url":"https://api.github.com/users/kviljoen/gists{/gist_id}","starred_url":"https://api.github.com/users/kviljoen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kviljoen/subscriptions","organizations_url":"https://api.github.com/users/kviljoen/orgs","repos_url":"https://api.github.com/users/kviljoen/repos","events_url":"https://api.github.com/users/kviljoen/events{/privacy}","received_events_url":"https://api.github.com/users/kviljoen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2017-10-04T12:37:27Z","updated_at":"2018-03-12T07:30:53Z","closed_at":null,"author_association":"NONE","body":"Hi Renaud,\r\n\r\nI'm having an issue with the aheatmap() function (same issue both in RStudio or R from terminal) that seems to be linked to the base grid package (running Mac OSX Sierra).\r\n\r\nThe error is \r\n Error in get(name, envir = asNamespace(pkg), inherits = FALSE) :    object 'L_currentViewport' not found \r\n\r\n**traceback()**\r\n8.\r\nget(name, envir = asNamespace(pkg), inherits = FALSE) \r\n7.\r\ngrid:::L_currentViewport at grid.R#36\r\n6.\r\ngrid.Call(grid:::L_currentViewport) at grid.R#43\r\n5.\r\ncurrent.viewport() at grid.R#51\r\n4.\r\nf_current.vpPath() \r\n3.\r\ncurrent.vpPath_patched() \r\n2.\r\nheatmap_motor(mat, border_color = border_color, cellwidth = cellwidth, \r\n    cellheight = cellheight, treeheight_col = treeheight_col, \r\n    treeheight_row = treeheight_row, tree_col = tree_col, tree_row = tree_row, \r\n    filename = filename, width = width, height = height, breaks = breaks,  ... \r\n1.\r\naheatmap(otu_table(merged.F), main = main) \r\n\r\n**sessionInfo**\r\n> sessionInfo()\r\nR version 3.4.1 (2017-06-30)\r\nPlatform: x86_64-apple-darwin15.6.0 (64-bit)\r\nRunning under: macOS Sierra 10.12.6\r\n\r\nMatrix products: default\r\nBLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib\r\nLAPACK: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib\r\n\r\nlocale:\r\n[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8\r\n\r\nattached base packages:\r\n[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     \r\n\r\nother attached packages:\r\n [1] gridExtra_2.3        dplyr_0.7.4          metagenomeSeq_1.18.0 RColorBrewer_1.1-2   glmnet_2.0-13        foreach_1.4.3       \r\n [7] Matrix_1.2-10        limma_3.32.7         epiR_0.9-87          survival_2.41-3      dunn.test_1.3.4      ROCR_1.0-7          \r\n[13] gplots_3.0.1         randomForest_4.6-12  fifer_1.1            MASS_7.3-47          matrixStats_0.52.2   psych_1.7.8         \r\n[19] corrplot_0.77        Rmisc_1.5            plyr_1.8.4           ggplot2_2.2.1        vegan_2.4-4          lattice_0.20-35     \r\n[25] permute_0.9-4        phyloseq_1.20.0      NMF_0.20.6           Biobase_2.36.2       BiocGenerics_0.22.0  cluster_2.0.6       \r\n[31] rngtools_1.2.4       pkgmaker_0.22        registry_0.3        \r\n\r\nloaded via a namespace (and not attached):\r\n [1] nlme_3.1-131          bitops_1.0-6          doParallel_1.0.11     tools_3.4.1           backports_1.1.1       R6_2.2.2             \r\n [7] rpart_4.1-11          KernSmooth_2.23-15    Hmisc_4.0-3           lazyeval_0.2.0        mgcv_1.8-17           colorspace_1.3-2     \r\n[13] ade4_1.7-8            nnet_7.3-12           mnormt_1.5-5          compiler_3.4.1        htmlTable_1.9         BiasedUrn_1.07       \r\n[19] sandwich_2.4-0        caTools_1.17.1        scales_0.5.0          checkmate_1.8.4       mvtnorm_1.0-6         stringr_1.2.0        \r\n[25] digest_0.6.12         foreign_0.8-69        XVector_0.16.0        base64enc_0.1-3       pkgconfig_2.0.1       htmltools_0.3.6      \r\n[31] plotrix_3.6-6         maps_3.2.0            htmlwidgets_0.9       rlang_0.1.2           bindr_0.1             zoo_1.8-0            \r\n[37] jsonlite_1.5          gtools_3.5.0          acepack_1.4.1         magrittr_1.5          modeltools_0.2-21     Formula_1.2-2        \r\n[43] dotCall64_0.9-04      biomformat_1.4.0      Rcpp_0.12.13          munsell_0.4.3         S4Vectors_0.14.5      ape_4.1              \r\n[49] stringi_1.1.5         multcomp_1.4-7        zlibbioc_1.22.0       rhdf5_2.20.0          grid_3.4.1            strucchange_1.5-1    \r\n[55] gdata_2.18.0          Biostrings_2.44.2     splines_3.4.1         multtest_2.32.0       knitr_1.17            igraph_1.1.2         \r\n[61] party_1.2-3           reshape2_1.4.2        codetools_0.2-15      stats4_3.4.1          glue_1.1.1            latticeExtra_0.6-28  \r\n[67] data.table_1.10.4     spam_2.1-1            gtable_0.2.0          assertthat_0.2.0      gridBase_0.4-7        coin_1.2-1           \r\n[73] xtable_1.8-2          randomForestSRC_2.5.0 tibble_1.3.4          iterators_1.0.8       IRanges_2.10.3        bindrcpp_0.2         \r\n[79] fields_9.0            TH.data_1.0-8  "},"comment":{"url":"https://api.github.com/repos/renozao/NMF/issues/comments/372216051","html_url":"https://github.com/renozao/NMF/issues/96#issuecomment-372216051","issue_url":"https://api.github.com/repos/renozao/NMF/issues/96","id":372216051,"user":{"login":"renozao","id":1070589,"avatar_url":"https://avatars1.githubusercontent.com/u/1070589?v=4","gravatar_id":"","url":"https://api.github.com/users/renozao","html_url":"https://github.com/renozao","followers_url":"https://api.github.com/users/renozao/followers","following_url":"https://api.github.com/users/renozao/following{/other_user}","gists_url":"https://api.github.com/users/renozao/gists{/gist_id}","starred_url":"https://api.github.com/users/renozao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/renozao/subscriptions","organizations_url":"https://api.github.com/users/renozao/orgs","repos_url":"https://api.github.com/users/renozao/repos","events_url":"https://api.github.com/users/renozao/events{/privacy}","received_events_url":"https://api.github.com/users/renozao/received_events","type":"User","site_admin":false},"created_at":"2018-03-12T07:30:53Z","updated_at":"2018-03-12T07:30:53Z","author_association":"OWNER","body":"This should indeed be fixed in devel branch.\n"}}
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