{"action":"created","issue":{"url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion/issues/87","repository_url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion","labels_url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion/issues/87/labels{/name}","comments_url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion/issues/87/comments","events_url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion/issues/87/events","html_url":"https://github.com/STAR-Fusion/STAR-Fusion/issues/87","id":343620055,"node_id":"MDU6SXNzdWUzNDM2MjAwNTU=","number":87,"title":"FusionInspector permission denied error","user":{"login":"jatintalwar","id":6955867,"node_id":"MDQ6VXNlcjY5NTU4Njc=","avatar_url":"https://avatars3.githubusercontent.com/u/6955867?v=4","gravatar_id":"","url":"https://api.github.com/users/jatintalwar","html_url":"https://github.com/jatintalwar","followers_url":"https://api.github.com/users/jatintalwar/followers","following_url":"https://api.github.com/users/jatintalwar/following{/other_user}","gists_url":"https://api.github.com/users/jatintalwar/gists{/gist_id}","starred_url":"https://api.github.com/users/jatintalwar/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jatintalwar/subscriptions","organizations_url":"https://api.github.com/users/jatintalwar/orgs","repos_url":"https://api.github.com/users/jatintalwar/repos","events_url":"https://api.github.com/users/jatintalwar/events{/privacy}","received_events_url":"https://api.github.com/users/jatintalwar/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-07-23T12:52:17Z","updated_at":"2018-07-24T07:09:27Z","closed_at":null,"author_association":"NONE","body":"Hi Brian,\r\n\r\nI am running FusionInspectector which i installed using your docker image. \r\n\r\nI get an error when i run the executable for FusionInspector from inside the docker image:\r\n\r\n/path/to/STAR-fusion/FusionInspector/FusionInspector --help\r\n\r\nTraceback (most recent call last):\r\n  File \"STAR-Fusion/FusionInspector/FusionInspector\", line 25, in <module>\r\n    logging.basicConfig(filename='FusionInspector.log', format=FORMAT, filemode='w', level=logging.DEBUG)\r\n  File \"/usr/lib/python2.7/logging/__init__.py\", line 1547, in basicConfig\r\n    hdlr = FileHandler(filename, mode)\r\n  File \"/usr/lib/python2.7/logging/__init__.py\", line 913, in __init__\r\n    StreamHandler.__init__(self, self._open())\r\n  File \"/usr/lib/python2.7/logging/__init__.py\", line 943, in _open\r\n    stream = open(self.baseFilename, self.mode)\r\nIOError: [Errno 13] Permission denied: u'/usr/local/src/FusionInspector.log'\r\n\r\nCan you help me to resolve this please?\r\n\r\nThanks,\r\nJatin"},"comment":{"url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion/issues/comments/407304564","html_url":"https://github.com/STAR-Fusion/STAR-Fusion/issues/87#issuecomment-407304564","issue_url":"https://api.github.com/repos/STAR-Fusion/STAR-Fusion/issues/87","id":407304564,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzMwNDU2NA==","user":{"login":"brianjohnhaas","id":7542111,"node_id":"MDQ6VXNlcjc1NDIxMTE=","avatar_url":"https://avatars0.githubusercontent.com/u/7542111?v=4","gravatar_id":"","url":"https://api.github.com/users/brianjohnhaas","html_url":"https://github.com/brianjohnhaas","followers_url":"https://api.github.com/users/brianjohnhaas/followers","following_url":"https://api.github.com/users/brianjohnhaas/following{/other_user}","gists_url":"https://api.github.com/users/brianjohnhaas/gists{/gist_id}","starred_url":"https://api.github.com/users/brianjohnhaas/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/brianjohnhaas/subscriptions","organizations_url":"https://api.github.com/users/brianjohnhaas/orgs","repos_url":"https://api.github.com/users/brianjohnhaas/repos","events_url":"https://api.github.com/users/brianjohnhaas/events{/privacy}","received_events_url":"https://api.github.com/users/brianjohnhaas/received_events","type":"User","site_admin":false},"created_at":"2018-07-24T07:09:27Z","updated_at":"2018-07-24T07:09:27Z","author_association":"CONTRIBUTOR","body":"Thanks.  I'll aim to look into this later tonight.  Traveling...\n\nmore later,\n\n~b\n\nOn Tue, Jul 24, 2018 at 9:06 AM Talwar Jatin (Jay) <notifications@github.com>\nwrote:\n\n> Here you go:\n>\n> docker run --rm --entrypoint=\"/bin/bash\" -v /cluster:/cluster -u $(id\n> -u):$(id -g) star-fusion-1.4:t0 -c\n> \"STAR-Fusion/FusionInspector/FusionInspector --help\"\n>\n> Also attached please find the docker file i am using. Hope that helps.\n> star-fusion_Dockerfile.txt\n> <https://github.com/STAR-Fusion/STAR-Fusion/files/2222360/star-fusion_Dockerfile.txt>\n>\n> —\n> You are receiving this because you commented.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/STAR-Fusion/STAR-Fusion/issues/87#issuecomment-407303911>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AHMVX1KGvqCPOzEyQzYG4L3fhM9Y2yV8ks5uJsdzgaJpZM4Va76q>\n> .\n>\n\n\n-- \n--\nBrian J. Haas\nThe Broad Institute\nhttp://broadinstitute.org/~bhaas <http://broad.mit.edu/~bhaas>\n"}}
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