{"action":"created","issue":{"url":"https://api.github.com/repos/tripal/tripal/issues/689","repository_url":"https://api.github.com/repos/tripal/tripal","labels_url":"https://api.github.com/repos/tripal/tripal/issues/689/labels{/name}","comments_url":"https://api.github.com/repos/tripal/tripal/issues/689/comments","events_url":"https://api.github.com/repos/tripal/tripal/issues/689/events","html_url":"https://github.com/tripal/tripal/issues/689","id":364410019,"node_id":"MDU6SXNzdWUzNjQ0MTAwMTk=","number":689,"title":"Functional Annotation","user":{"login":"kyrenya","id":43243429,"node_id":"MDQ6VXNlcjQzMjQzNDI5","avatar_url":"https://avatars1.githubusercontent.com/u/43243429?v=4","gravatar_id":"","url":"https://api.github.com/users/kyrenya","html_url":"https://github.com/kyrenya","followers_url":"https://api.github.com/users/kyrenya/followers","following_url":"https://api.github.com/users/kyrenya/following{/other_user}","gists_url":"https://api.github.com/users/kyrenya/gists{/gist_id}","starred_url":"https://api.github.com/users/kyrenya/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kyrenya/subscriptions","organizations_url":"https://api.github.com/users/kyrenya/orgs","repos_url":"https://api.github.com/users/kyrenya/repos","events_url":"https://api.github.com/users/kyrenya/events{/privacy}","received_events_url":"https://api.github.com/users/kyrenya/received_events","type":"User","site_admin":false},"labels":[{"id":686191570,"node_id":"MDU6TGFiZWw2ODYxOTE1NzA=","url":"https://api.github.com/repos/tripal/tripal/labels/documentation","name":"documentation","color":"bfdadc","default":false},{"id":786499008,"node_id":"MDU6TGFiZWw3ODY0OTkwMDg=","url":"https://api.github.com/repos/tripal/tripal/labels/fix%20required","name":"fix required","color":"540875","default":false},{"id":261706550,"node_id":"MDU6TGFiZWwyNjE3MDY1NTA=","url":"https://api.github.com/repos/tripal/tripal/labels/question","name":"question","color":"006b75","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2018-09-27T10:35:24Z","updated_at":"2018-10-01T12:32:47Z","closed_at":null,"author_association":"NONE","body":"Hi, \r\nI'm trying with no success to follow the tutorial for functional Annotation Modules (https://tripal.info/node/106), though I'm using Tripal v3 (I didnt find a tutorial for this version, is there any?).\r\n\r\nI came across several issues: \r\n\r\n_BLAST Module:\r\n After following the instruction for loading the BLAST results: \r\n    \r\n        Database: ExPASy SwissProt\r\n        BLAST XML File/Directory: /var/www/html/sites/default/files/Blastx_citrus_sinensis-orange1.1g015632m.g.fasta.0_vs_uniprot_sprot.fasta.out\r\n        Query Type: mRNA\r\n        Parameters: -p blastx -e 1e-6 -m 7\r\n        Submit a job to parse the XML output: checked\r\n        Keywords for custom search: checked\r\n        Click the Save button. You can now see our new Analysis._\r\n\r\nI see the Analysis, but when running the job to parse the BLAST results I get the following Error message: \r\n\r\n        PDOException: SQLSTATE[42P01]: Undefined table: 7 ERROR: relation \"chado.blast_hit_data\"  does not exist LINE 1: DELETE FROM chado.blast_hit_data WHERE analysisfeature_id =... ^: DELETE FROM chado.blast_hit_data WHERE analysisfeature_id = :analysisfeature_id ; Array ( [:analysisfeature_id] => 157384 ) in chado_query() (line 1715 of /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc).\r\n\r\nInterProScan Module: \r\nEverything seems to work fine, but I don't see the \"Interpro Report\" link anywhere.\r\nI also cannot follow the link http://[localhost]/orange1.1g015615m\r\n\r\nKEGG Module works fine! \r\n\r\nThanks in advance.\r\n\r\nBy the way, I'm not using Tripal via git..   should I? \r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n \r\n\r\n"},"comment":{"url":"https://api.github.com/repos/tripal/tripal/issues/comments/425890511","html_url":"https://github.com/tripal/tripal/issues/689#issuecomment-425890511","issue_url":"https://api.github.com/repos/tripal/tripal/issues/689","id":425890511,"node_id":"MDEyOklzc3VlQ29tbWVudDQyNTg5MDUxMQ==","user":{"login":"bradfordcondon","id":7063154,"node_id":"MDQ6VXNlcjcwNjMxNTQ=","avatar_url":"https://avatars2.githubusercontent.com/u/7063154?v=4","gravatar_id":"","url":"https://api.github.com/users/bradfordcondon","html_url":"https://github.com/bradfordcondon","followers_url":"https://api.github.com/users/bradfordcondon/followers","following_url":"https://api.github.com/users/bradfordcondon/following{/other_user}","gists_url":"https://api.github.com/users/bradfordcondon/gists{/gist_id}","starred_url":"https://api.github.com/users/bradfordcondon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bradfordcondon/subscriptions","organizations_url":"https://api.github.com/users/bradfordcondon/orgs","repos_url":"https://api.github.com/users/bradfordcondon/repos","events_url":"https://api.github.com/users/bradfordcondon/events{/privacy}","received_events_url":"https://api.github.com/users/bradfordcondon/received_events","type":"User","site_admin":false},"created_at":"2018-10-01T12:32:47Z","updated_at":"2018-10-01T12:32:47Z","author_association":"MEMBER","body":"As in you couldnt visit that feature page at all?  Because that would indicate a problem with loading the FASTA file.  If you're saying the BLAST data didnt show up on that feature page, then (for **tripal 3**) you first need to **add the BLAST field** at `admin -> structure -> mRNA -> fields` (click Check for new fields) and then enable the field for display by clicking the display tab.\r\n\r\n"}}
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