{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/go-annotation/issues/2029","repository_url":"https://api.github.com/repos/geneontology/go-annotation","labels_url":"https://api.github.com/repos/geneontology/go-annotation/issues/2029/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/go-annotation/issues/2029/comments","events_url":"https://api.github.com/repos/geneontology/go-annotation/issues/2029/events","html_url":"https://github.com/geneontology/go-annotation/issues/2029","id":343194985,"node_id":"MDU6SXNzdWUzNDMxOTQ5ODU=","number":2029,"title":"predatory journals and journal blacklist","user":{"login":"ValWood","id":7359272,"node_id":"MDQ6VXNlcjczNTkyNzI=","avatar_url":"https://avatars2.githubusercontent.com/u/7359272?v=4","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"labels":[{"id":942385794,"node_id":"MDU6TGFiZWw5NDIzODU3OTQ=","url":"https://api.github.com/repos/geneontology/go-annotation/labels/QC","name":"QC","color":"dc2dff","default":false}],"state":"open","locked":false,"assignee":{"login":"pgaudet","id":4782928,"node_id":"MDQ6VXNlcjQ3ODI5Mjg=","avatar_url":"https://avatars0.githubusercontent.com/u/4782928?v=4","gravatar_id":"","url":"https://api.github.com/users/pgaudet","html_url":"https://github.com/pgaudet","followers_url":"https://api.github.com/users/pgaudet/followers","following_url":"https://api.github.com/users/pgaudet/following{/other_user}","gists_url":"https://api.github.com/users/pgaudet/gists{/gist_id}","starred_url":"https://api.github.com/users/pgaudet/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pgaudet/subscriptions","organizations_url":"https://api.github.com/users/pgaudet/orgs","repos_url":"https://api.github.com/users/pgaudet/repos","events_url":"https://api.github.com/users/pgaudet/events{/privacy}","received_events_url":"https://api.github.com/users/pgaudet/received_events","type":"User","site_admin":false},"assignees":[{"login":"pgaudet","id":4782928,"node_id":"MDQ6VXNlcjQ3ODI5Mjg=","avatar_url":"https://avatars0.githubusercontent.com/u/4782928?v=4","gravatar_id":"","url":"https://api.github.com/users/pgaudet","html_url":"https://github.com/pgaudet","followers_url":"https://api.github.com/users/pgaudet/followers","following_url":"https://api.github.com/users/pgaudet/following{/other_user}","gists_url":"https://api.github.com/users/pgaudet/gists{/gist_id}","starred_url":"https://api.github.com/users/pgaudet/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pgaudet/subscriptions","organizations_url":"https://api.github.com/users/pgaudet/orgs","repos_url":"https://api.github.com/users/pgaudet/repos","events_url":"https://api.github.com/users/pgaudet/events{/privacy}","received_events_url":"https://api.github.com/users/pgaudet/received_events","type":"User","site_admin":false}],"milestone":null,"comments":4,"created_at":"2018-07-20T17:53:07Z","updated_at":"2018-07-24T11:48:01Z","closed_at":null,"author_association":"NONE","body":"It was pointed out to me at the WB SAB that some  predatory journals are indexed BY PubMed.\r\n\r\nI propose that we make a list of  any predatory  journals, or journals with a questionable review or absent review process and blacklist all for curation....\r\n\r\nI came across this gem this week in my PubMed triage\r\n\r\nIdentification of Schizosaccharomyces pombe in the guts of healthy individuals and patients with colorectal cancer: preliminary evidence from a gut microbiome secretome study.\r\nChin SF, Megat Mohd Azlan PIH, Mazlan L, Neoh HM.\r\nGut Pathog. 2018 Jul 10;10:29. doi: 10.1186/s13099-018-0258-5. eCollection 2018.\r\n\r\nPMID: 30008808 \r\n\r\nIt contained such gems as:\r\n\r\n - Its 50 genes are similar to human genes associated with diseases, with 23 genes similar to human cancer genes [3] \r\n\r\n -  In our study, a total of 124 proteins secreted by S. pombe were exclusively found in the control samples. Five proteins found in the CRC samples were successfully mapped to the yeast. \r\n\r\n( they are searching mass spec fragments against UniProt ffs, god knows what the hits are actually to, they don't provide any data) \r\n\r\n - To the best of our knowledge, no previous study has shown the association between S. pombe and human diseases\r\n\r\n - It is still unknown if the proteins secreted by S. pombe identified in this study result in tumorigenesis or vice versa. \r\n\r\nSeriously how does this shit end up in PubMed? "},"comment":{"url":"https://api.github.com/repos/geneontology/go-annotation/issues/comments/407377707","html_url":"https://github.com/geneontology/go-annotation/issues/2029#issuecomment-407377707","issue_url":"https://api.github.com/repos/geneontology/go-annotation/issues/2029","id":407377707,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzM3NzcwNw==","user":{"login":"pgaudet","id":4782928,"node_id":"MDQ6VXNlcjQ3ODI5Mjg=","avatar_url":"https://avatars0.githubusercontent.com/u/4782928?v=4","gravatar_id":"","url":"https://api.github.com/users/pgaudet","html_url":"https://github.com/pgaudet","followers_url":"https://api.github.com/users/pgaudet/followers","following_url":"https://api.github.com/users/pgaudet/following{/other_user}","gists_url":"https://api.github.com/users/pgaudet/gists{/gist_id}","starred_url":"https://api.github.com/users/pgaudet/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pgaudet/subscriptions","organizations_url":"https://api.github.com/users/pgaudet/orgs","repos_url":"https://api.github.com/users/pgaudet/repos","events_url":"https://api.github.com/users/pgaudet/events{/privacy}","received_events_url":"https://api.github.com/users/pgaudet/received_events","type":"User","site_admin":false},"created_at":"2018-07-24T11:48:01Z","updated_at":"2018-07-24T11:48:01Z","author_association":"NONE","body":"We could do the same mechanism as for papers with findings later found to be incorrect, (not yet in place) and just make a list, and filter out papers from those journals ? "}}
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