{"action":"created","issue":{"url":"https://api.github.com/repos/alliance-genome/agr_loader/issues/310","repository_url":"https://api.github.com/repos/alliance-genome/agr_loader","labels_url":"https://api.github.com/repos/alliance-genome/agr_loader/issues/310/labels{/name}","comments_url":"https://api.github.com/repos/alliance-genome/agr_loader/issues/310/comments","events_url":"https://api.github.com/repos/alliance-genome/agr_loader/issues/310/events","html_url":"https://github.com/alliance-genome/agr_loader/pull/310","id":374156884,"node_id":"MDExOlB1bGxSZXF1ZXN0MjI1OTIzMjU3","number":310,"title":"I was using neo4j version 2 Cypher query syntax - looks clean now","user":{"login":"a8wright","id":668955,"node_id":"MDQ6VXNlcjY2ODk1NQ==","avatar_url":"https://avatars3.githubusercontent.com/u/668955?v=4","gravatar_id":"","url":"https://api.github.com/users/a8wright","html_url":"https://github.com/a8wright","followers_url":"https://api.github.com/users/a8wright/followers","following_url":"https://api.github.com/users/a8wright/following{/other_user}","gists_url":"https://api.github.com/users/a8wright/gists{/gist_id}","starred_url":"https://api.github.com/users/a8wright/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/a8wright/subscriptions","organizations_url":"https://api.github.com/users/a8wright/orgs","repos_url":"https://api.github.com/users/a8wright/repos","events_url":"https://api.github.com/users/a8wright/events{/privacy}","received_events_url":"https://api.github.com/users/a8wright/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-10-25T22:24:33Z","updated_at":"2018-10-26T01:34:35Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/alliance-genome/agr_loader/pulls/310","html_url":"https://github.com/alliance-genome/agr_loader/pull/310","diff_url":"https://github.com/alliance-genome/agr_loader/pull/310.diff","patch_url":"https://github.com/alliance-genome/agr_loader/pull/310.patch"},"body":"I have tested this by fully building the database from scratch and then testing different orthologous genes. Mainly focusing on gene MGI:98371 and HGNC:11204\r\n\r\nI don't think this change fixes anything but it makes the query a lot more readable. \r\n\r\n@sierra-moxon if you could look at the results and see if you can confirm the data in the database seams correct. By confirm I mean look at the edges associated with the two genes above and see if you think they look right\r\n\r\n@cmpich Do you think you could look into the query from the API / indexer. The curators are saying that nothing is showing up for MGI with regards to gene-disease associations. I will forward you the email with more information. \r\n\r\n* Staring at these nodes and edges for these associations gets to be quite complicated. I did the best I can to reason through the nodes and edges. From what I saw they looked right with this pull request. I am not sure about before the pull request... running out of time today. "},"comment":{"url":"https://api.github.com/repos/alliance-genome/agr_loader/issues/comments/433257659","html_url":"https://github.com/alliance-genome/agr_loader/pull/310#issuecomment-433257659","issue_url":"https://api.github.com/repos/alliance-genome/agr_loader/issues/310","id":433257659,"node_id":"MDEyOklzc3VlQ29tbWVudDQzMzI1NzY1OQ==","user":{"login":"sierra-moxon","id":4561292,"node_id":"MDQ6VXNlcjQ1NjEyOTI=","avatar_url":"https://avatars0.githubusercontent.com/u/4561292?v=4","gravatar_id":"","url":"https://api.github.com/users/sierra-moxon","html_url":"https://github.com/sierra-moxon","followers_url":"https://api.github.com/users/sierra-moxon/followers","following_url":"https://api.github.com/users/sierra-moxon/following{/other_user}","gists_url":"https://api.github.com/users/sierra-moxon/gists{/gist_id}","starred_url":"https://api.github.com/users/sierra-moxon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sierra-moxon/subscriptions","organizations_url":"https://api.github.com/users/sierra-moxon/orgs","repos_url":"https://api.github.com/users/sierra-moxon/repos","events_url":"https://api.github.com/users/sierra-moxon/events{/privacy}","received_events_url":"https://api.github.com/users/sierra-moxon/received_events","type":"User","site_admin":false},"created_at":"2018-10-26T01:34:35Z","updated_at":"2018-10-26T01:34:35Z","author_association":"CONTRIBUTOR","body":"@christabon @a8wright - let’s make sure those genes aren’t hard coded?"}}
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