{"action":"created","issue":{"url":"https://api.github.com/repos/wadpac/GGIR/issues/113","repository_url":"https://api.github.com/repos/wadpac/GGIR","labels_url":"https://api.github.com/repos/wadpac/GGIR/issues/113/labels{/name}","comments_url":"https://api.github.com/repos/wadpac/GGIR/issues/113/comments","events_url":"https://api.github.com/repos/wadpac/GGIR/issues/113/events","html_url":"https://github.com/wadpac/GGIR/issues/113","id":359742568,"node_id":"MDU6SXNzdWUzNTk3NDI1Njg=","number":113,"title":"Detection of sleep period without using sleep log data","user":{"login":"KHC745","id":42427647,"node_id":"MDQ6VXNlcjQyNDI3NjQ3","avatar_url":"https://avatars3.githubusercontent.com/u/42427647?v=4","gravatar_id":"","url":"https://api.github.com/users/KHC745","html_url":"https://github.com/KHC745","followers_url":"https://api.github.com/users/KHC745/followers","following_url":"https://api.github.com/users/KHC745/following{/other_user}","gists_url":"https://api.github.com/users/KHC745/gists{/gist_id}","starred_url":"https://api.github.com/users/KHC745/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/KHC745/subscriptions","organizations_url":"https://api.github.com/users/KHC745/orgs","repos_url":"https://api.github.com/users/KHC745/repos","events_url":"https://api.github.com/users/KHC745/events{/privacy}","received_events_url":"https://api.github.com/users/KHC745/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-09-13T04:56:10Z","updated_at":"2018-11-04T22:12:45Z","closed_at":"2018-09-19T01:58:54Z","author_association":"NONE","body":"Hi again,\r\n\r\nI have had difficulties loading the sleep log dataset into R and thus I am trying to analyse the data without using the sleep logs. However, the results seemed strange as the sleep period was detected to be during daytime (in the afternoon) for all measurement days while my participants were all schoolchildren. I am not sure if I have made any mistakes in the code writing:\r\n\r\ng.shell.GGIR(mode=c(1,2,3,4), datadir=\"/Users/khc745/Documents/GENEActiv analysis/Data\", outputdir=\"/Users/khc745/Documents/GENEActiv analysis/Results\", f0=1, f1=1, do.enmo = TRUE, do.anglez=TRUE, chunksize=1, printsummary=TRUE, strategy = 2, ndayswindow=6, hrs.del.start = 0, hrs.del.end = 0, maxdur = 7,includedaycrit = 10, winhr = 5, qwindow=c(0,24), timethreshold=5, anglethreshold=5, ignorenonwear=TRUE, excludefirstlast = FALSE, def.noc.sleep=c (19,8), do.visual = FALSE, nnights =6, do.report=c(2,3,4), visualreport=TRUE, dofirstpage = TRUE, viewingwindow=1)\r\n\r\n![screen shot 2018-09-13 at 2 54 57 pm](https://user-images.githubusercontent.com/42427647/45467858-0d72b000-b765-11e8-9ec7-130604c4ba2e.png)\r\n\r\nThanks in advance for the advice! "},"comment":{"url":"https://api.github.com/repos/wadpac/GGIR/issues/comments/435712958","html_url":"https://github.com/wadpac/GGIR/issues/113#issuecomment-435712958","issue_url":"https://api.github.com/repos/wadpac/GGIR/issues/113","id":435712958,"node_id":"MDEyOklzc3VlQ29tbWVudDQzNTcxMjk1OA==","user":{"login":"vincentvanhees","id":8362333,"node_id":"MDQ6VXNlcjgzNjIzMzM=","avatar_url":"https://avatars1.githubusercontent.com/u/8362333?v=4","gravatar_id":"","url":"https://api.github.com/users/vincentvanhees","html_url":"https://github.com/vincentvanhees","followers_url":"https://api.github.com/users/vincentvanhees/followers","following_url":"https://api.github.com/users/vincentvanhees/following{/other_user}","gists_url":"https://api.github.com/users/vincentvanhees/gists{/gist_id}","starred_url":"https://api.github.com/users/vincentvanhees/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vincentvanhees/subscriptions","organizations_url":"https://api.github.com/users/vincentvanhees/orgs","repos_url":"https://api.github.com/users/vincentvanhees/repos","events_url":"https://api.github.com/users/vincentvanhees/events{/privacy}","received_events_url":"https://api.github.com/users/vincentvanhees/received_events","type":"User","site_admin":false},"created_at":"2018-11-04T22:12:45Z","updated_at":"2018-11-04T22:12:45Z","author_association":"MEMBER","body":"One possible issue with you code is that you have overwrite = FALSE, \r\nWith this setting GGIR will not try to reprocess the files you already processed and you will continue to see the same problem. Change it to overwrite = TRUE, and run all parts again."}}
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