{"action":"created","issue":{"url":"https://api.github.com/repos/cmap/cmapR/issues/22","repository_url":"https://api.github.com/repos/cmap/cmapR","labels_url":"https://api.github.com/repos/cmap/cmapR/issues/22/labels{/name}","comments_url":"https://api.github.com/repos/cmap/cmapR/issues/22/comments","events_url":"https://api.github.com/repos/cmap/cmapR/issues/22/events","html_url":"https://github.com/cmap/cmapR/issues/22","id":361956499,"node_id":"MDU6SXNzdWUzNjE5NTY0OTk=","number":22,"title":"parse.gctx fails to work unless user explicitly import rhdf5","user":{"login":"nzllim","id":6352377,"node_id":"MDQ6VXNlcjYzNTIzNzc=","avatar_url":"https://avatars0.githubusercontent.com/u/6352377?v=4","gravatar_id":"","url":"https://api.github.com/users/nzllim","html_url":"https://github.com/nzllim","followers_url":"https://api.github.com/users/nzllim/followers","following_url":"https://api.github.com/users/nzllim/following{/other_user}","gists_url":"https://api.github.com/users/nzllim/gists{/gist_id}","starred_url":"https://api.github.com/users/nzllim/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nzllim/subscriptions","organizations_url":"https://api.github.com/users/nzllim/orgs","repos_url":"https://api.github.com/users/nzllim/repos","events_url":"https://api.github.com/users/nzllim/events{/privacy}","received_events_url":"https://api.github.com/users/nzllim/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-09-19T22:50:27Z","updated_at":"2018-09-20T05:39:54Z","closed_at":null,"author_association":"NONE","body":"Contrary to prior behaviour, where cmapR auto-magically imports `rhdf5`, in the latest iteration, it fails to do so, and when executing parse.gctx, it returns with an error:\r\n\r\n> Error in h5closeAll() : could not find function \"h5closeAll\"\r\n\r\nFor the uninitiated, they may not realize this is an `rhdf5` function, which wouldn't be great for first-time users."},"comment":{"url":"https://api.github.com/repos/cmap/cmapR/issues/comments/423046465","html_url":"https://github.com/cmap/cmapR/issues/22#issuecomment-423046465","issue_url":"https://api.github.com/repos/cmap/cmapR/issues/22","id":423046465,"node_id":"MDEyOklzc3VlQ29tbWVudDQyMzA0NjQ2NQ==","user":{"login":"nzllim","id":6352377,"node_id":"MDQ6VXNlcjYzNTIzNzc=","avatar_url":"https://avatars0.githubusercontent.com/u/6352377?v=4","gravatar_id":"","url":"https://api.github.com/users/nzllim","html_url":"https://github.com/nzllim","followers_url":"https://api.github.com/users/nzllim/followers","following_url":"https://api.github.com/users/nzllim/following{/other_user}","gists_url":"https://api.github.com/users/nzllim/gists{/gist_id}","starred_url":"https://api.github.com/users/nzllim/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nzllim/subscriptions","organizations_url":"https://api.github.com/users/nzllim/orgs","repos_url":"https://api.github.com/users/nzllim/repos","events_url":"https://api.github.com/users/nzllim/events{/privacy}","received_events_url":"https://api.github.com/users/nzllim/received_events","type":"User","site_admin":false},"created_at":"2018-09-20T05:39:54Z","updated_at":"2018-09-20T05:39:54Z","author_association":"NONE","body":"Hi @tnat1031,\r\nStrangely enough that is exactly what I did, and it failed. The order of execution was such:\r\n`library(data.table)\r\nlibrary(cmapR)\r\na = parse.gctx('Level3.gctx)`\r\n\r\nSnippets of SessionInfo():\r\nR version: 3.5.0\r\nOS: CentsOS 7 x64.\r\nAll latest versions of data.table, cmapR, rhdf5 and their related dependencies."}}
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