{"action":"created","issue":{"url":"https://api.github.com/repos/era7bio/asdfjkl/issues/7","repository_url":"https://api.github.com/repos/era7bio/asdfjkl","labels_url":"https://api.github.com/repos/era7bio/asdfjkl/issues/7/labels{/name}","comments_url":"https://api.github.com/repos/era7bio/asdfjkl/issues/7/comments","events_url":"https://api.github.com/repos/era7bio/asdfjkl/issues/7/events","html_url":"https://github.com/era7bio/asdfjkl/pull/7","id":301512507,"number":7,"title":"Improve the visualization R script","user":{"login":"laughedelic","id":766656,"avatar_url":"https://avatars2.githubusercontent.com/u/766656?v=4","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"laughedelic","id":766656,"avatar_url":"https://avatars2.githubusercontent.com/u/766656?v=4","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false},"assignees":[{"login":"laughedelic","id":766656,"avatar_url":"https://avatars2.githubusercontent.com/u/766656?v=4","gravatar_id":"","url":"https://api.github.com/users/laughedelic","html_url":"https://github.com/laughedelic","followers_url":"https://api.github.com/users/laughedelic/followers","following_url":"https://api.github.com/users/laughedelic/following{/other_user}","gists_url":"https://api.github.com/users/laughedelic/gists{/gist_id}","starred_url":"https://api.github.com/users/laughedelic/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/laughedelic/subscriptions","organizations_url":"https://api.github.com/users/laughedelic/orgs","repos_url":"https://api.github.com/users/laughedelic/repos","events_url":"https://api.github.com/users/laughedelic/events{/privacy}","received_events_url":"https://api.github.com/users/laughedelic/received_events","type":"User","site_admin":false}],"milestone":null,"comments":7,"created_at":"2018-03-01T18:33:52Z","updated_at":"2018-03-03T11:08:03Z","closed_at":null,"author_association":"MEMBER","pull_request":{"url":"https://api.github.com/repos/era7bio/asdfjkl/pulls/7","html_url":"https://github.com/era7bio/asdfjkl/pull/7","diff_url":"https://github.com/era7bio/asdfjkl/pull/7.diff","patch_url":"https://github.com/era7bio/asdfjkl/pull/7.patch"},"body":"This addresses one problem that I encountered in https://github.com/era7bio/tcrbsilvia/issues/5 (regarding having spaces in columns of the TSV) and some improvements recommended by @rtobes (less elements and amino acid sequences instead of IDs). I don't know if all of this applies equally to the MIODx usage of this project, so you tell me.\r\n\r\n* change to using only top-25 to make the visualization less crowded\r\n* use different columns: nucleotide sequence & amino acid sequence (so\r\n  that the chart will show amino acid seq-s instead of the\r\n  representative seq-s IDs)\r\n* use `cut` to choose columns of interest, because `awk` splits by any\r\n  whitespace and it breaks if any column contains spaces\r\n\r\nHere's how it looks after the change:\r\n\r\n![output](https://user-images.githubusercontent.com/766656/36862513-4f85dd96-1d87-11e8-89ad-e651bb5f5541.png)\r\n"},"comment":{"url":"https://api.github.com/repos/era7bio/asdfjkl/issues/comments/370139255","html_url":"https://github.com/era7bio/asdfjkl/pull/7#issuecomment-370139255","issue_url":"https://api.github.com/repos/era7bio/asdfjkl/issues/7","id":370139255,"user":{"login":"agarciamontoro","id":3924815,"avatar_url":"https://avatars2.githubusercontent.com/u/3924815?v=4","gravatar_id":"","url":"https://api.github.com/users/agarciamontoro","html_url":"https://github.com/agarciamontoro","followers_url":"https://api.github.com/users/agarciamontoro/followers","following_url":"https://api.github.com/users/agarciamontoro/following{/other_user}","gists_url":"https://api.github.com/users/agarciamontoro/gists{/gist_id}","starred_url":"https://api.github.com/users/agarciamontoro/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/agarciamontoro/subscriptions","organizations_url":"https://api.github.com/users/agarciamontoro/orgs","repos_url":"https://api.github.com/users/agarciamontoro/repos","events_url":"https://api.github.com/users/agarciamontoro/events{/privacy}","received_events_url":"https://api.github.com/users/agarciamontoro/received_events","type":"User","site_admin":false},"created_at":"2018-03-03T11:08:03Z","updated_at":"2018-03-03T11:08:03Z","author_association":"CONTRIBUTOR","body":"awk rocks!"}}
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