{"action":"created","issue":{"url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq/issues/26","repository_url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq","labels_url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq/issues/26/labels{/name}","comments_url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq/issues/26/comments","events_url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq/issues/26/events","html_url":"https://github.com/BIMSBbioinfo/pigx_rnaseq/issues/26","id":307641973,"number":26,"title":"fastqc error on max-cluster","user":{"login":"alexg9010","id":14021775,"avatar_url":"https://avatars3.githubusercontent.com/u/14021775?v=4","gravatar_id":"","url":"https://api.github.com/users/alexg9010","html_url":"https://github.com/alexg9010","followers_url":"https://api.github.com/users/alexg9010/followers","following_url":"https://api.github.com/users/alexg9010/following{/other_user}","gists_url":"https://api.github.com/users/alexg9010/gists{/gist_id}","starred_url":"https://api.github.com/users/alexg9010/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexg9010/subscriptions","organizations_url":"https://api.github.com/users/alexg9010/orgs","repos_url":"https://api.github.com/users/alexg9010/repos","events_url":"https://api.github.com/users/alexg9010/events{/privacy}","received_events_url":"https://api.github.com/users/alexg9010/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-03-22T13:27:07Z","updated_at":"2018-03-22T13:29:23Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"Somehow this only happens on max-cluster, either interactive or via qsub.\r\n```\r\n[agosdsc@max075.mdc-berlin.net:~/projects/andreas_atac] $ fastqc --outdir /home/agosdsc/projects/andreas_atac/ --extract -f fastq -t 1 /scratch/AG_Akalin/agosdsc/projects/andreas_rnaseq/fastq/AO_BT_012_S7_L003_R1_001.fastq.gz\r\nStarted analysis of AO_BT_012_S7_L003_R1_001.fastq.gz\r\nlibrary initialization failed - unable to get max # of allocated fds\r\n```"},"comment":{"url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq/issues/comments/375305629","html_url":"https://github.com/BIMSBbioinfo/pigx_rnaseq/issues/26#issuecomment-375305629","issue_url":"https://api.github.com/repos/BIMSBbioinfo/pigx_rnaseq/issues/26","id":375305629,"user":{"login":"alexg9010","id":14021775,"avatar_url":"https://avatars3.githubusercontent.com/u/14021775?v=4","gravatar_id":"","url":"https://api.github.com/users/alexg9010","html_url":"https://github.com/alexg9010","followers_url":"https://api.github.com/users/alexg9010/followers","following_url":"https://api.github.com/users/alexg9010/following{/other_user}","gists_url":"https://api.github.com/users/alexg9010/gists{/gist_id}","starred_url":"https://api.github.com/users/alexg9010/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/alexg9010/subscriptions","organizations_url":"https://api.github.com/users/alexg9010/orgs","repos_url":"https://api.github.com/users/alexg9010/repos","events_url":"https://api.github.com/users/alexg9010/events{/privacy}","received_events_url":"https://api.github.com/users/alexg9010/received_events","type":"User","site_admin":false},"created_at":"2018-03-22T13:29:22Z","updated_at":"2018-03-22T13:29:22Z","author_association":"CONTRIBUTOR","body":"Okay this seems to be the version of fastqc that comes with guixr-rhel6. \r\nif I use another fastqc, that was linked before, then it works.\r\n"}}
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