{"action":"created","issue":{"url":"https://api.github.com/repos/biocore/q2-fragment-insertion/issues/38","repository_url":"https://api.github.com/repos/biocore/q2-fragment-insertion","labels_url":"https://api.github.com/repos/biocore/q2-fragment-insertion/issues/38/labels{/name}","comments_url":"https://api.github.com/repos/biocore/q2-fragment-insertion/issues/38/comments","events_url":"https://api.github.com/repos/biocore/q2-fragment-insertion/issues/38/events","html_url":"https://github.com/biocore/q2-fragment-insertion/pull/38","id":334361370,"node_id":"MDExOlB1bGxSZXF1ZXN0MTk2MzUyMTY1","number":38,"title":"Add debug flag","user":{"login":"sjanssen2","id":11960616,"node_id":"MDQ6VXNlcjExOTYwNjE2","avatar_url":"https://avatars0.githubusercontent.com/u/11960616?v=4","gravatar_id":"","url":"https://api.github.com/users/sjanssen2","html_url":"https://github.com/sjanssen2","followers_url":"https://api.github.com/users/sjanssen2/followers","following_url":"https://api.github.com/users/sjanssen2/following{/other_user}","gists_url":"https://api.github.com/users/sjanssen2/gists{/gist_id}","starred_url":"https://api.github.com/users/sjanssen2/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sjanssen2/subscriptions","organizations_url":"https://api.github.com/users/sjanssen2/orgs","repos_url":"https://api.github.com/users/sjanssen2/repos","events_url":"https://api.github.com/users/sjanssen2/events{/privacy}","received_events_url":"https://api.github.com/users/sjanssen2/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-06-21T06:54:49Z","updated_at":"2018-06-25T12:35:40Z","closed_at":null,"author_association":"COLLABORATOR","pull_request":{"url":"https://api.github.com/repos/biocore/q2-fragment-insertion/pulls/38","html_url":"https://github.com/biocore/q2-fragment-insertion/pull/38","diff_url":"https://github.com/biocore/q2-fragment-insertion/pull/38.diff","patch_url":"https://github.com/biocore/q2-fragment-insertion/pull/38.patch"},"body":"If user raises `--p-debug` together with `--verbose`, SEPP will print logfiles in internal debug mode to STDOUT and NOT delete temporary directories if the run exists non zero. Thus, debugging will become much easier.\r\nI also added a default citation which should be integrated into produced artifacts.\r\n\r\nPlease also have a look at https://forum.qiime2.org/t/pass-verbose-flag-to-executable/4461/10 for design decisions."},"comment":{"url":"https://api.github.com/repos/biocore/q2-fragment-insertion/issues/comments/399936395","html_url":"https://github.com/biocore/q2-fragment-insertion/pull/38#issuecomment-399936395","issue_url":"https://api.github.com/repos/biocore/q2-fragment-insertion/issues/38","id":399936395,"node_id":"MDEyOklzc3VlQ29tbWVudDM5OTkzNjM5NQ==","user":{"login":"thermokarst","id":274668,"node_id":"MDQ6VXNlcjI3NDY2OA==","avatar_url":"https://avatars3.githubusercontent.com/u/274668?v=4","gravatar_id":"","url":"https://api.github.com/users/thermokarst","html_url":"https://github.com/thermokarst","followers_url":"https://api.github.com/users/thermokarst/followers","following_url":"https://api.github.com/users/thermokarst/following{/other_user}","gists_url":"https://api.github.com/users/thermokarst/gists{/gist_id}","starred_url":"https://api.github.com/users/thermokarst/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thermokarst/subscriptions","organizations_url":"https://api.github.com/users/thermokarst/orgs","repos_url":"https://api.github.com/users/thermokarst/repos","events_url":"https://api.github.com/users/thermokarst/events{/privacy}","received_events_url":"https://api.github.com/users/thermokarst/received_events","type":"User","site_admin":false},"created_at":"2018-06-25T12:35:40Z","updated_at":"2018-06-25T12:35:40Z","author_association":"MEMBER","body":"Hey @sjanssen2 I can take a look at this some time this week."}}
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