{"action":"closed","issue":{"url":"https://api.github.com/repos/ScienceToolkit/MiNA/issues/3","repository_url":"https://api.github.com/repos/ScienceToolkit/MiNA","labels_url":"https://api.github.com/repos/ScienceToolkit/MiNA/issues/3/labels{/name}","comments_url":"https://api.github.com/repos/ScienceToolkit/MiNA/issues/3/comments","events_url":"https://api.github.com/repos/ScienceToolkit/MiNA/issues/3/events","html_url":"https://github.com/ScienceToolkit/MiNA/issues/3","id":296481111,"node_id":"MDU6SXNzdWUyOTY0ODExMTE=","number":3,"title":"Thresholding method change does not alter applied threshold.","user":{"login":"ScienceToolkit","id":13035945,"node_id":"MDQ6VXNlcjEzMDM1OTQ1","avatar_url":"https://avatars2.githubusercontent.com/u/13035945?v=4","gravatar_id":"","url":"https://api.github.com/users/ScienceToolkit","html_url":"https://github.com/ScienceToolkit","followers_url":"https://api.github.com/users/ScienceToolkit/followers","following_url":"https://api.github.com/users/ScienceToolkit/following{/other_user}","gists_url":"https://api.github.com/users/ScienceToolkit/gists{/gist_id}","starred_url":"https://api.github.com/users/ScienceToolkit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ScienceToolkit/subscriptions","organizations_url":"https://api.github.com/users/ScienceToolkit/orgs","repos_url":"https://api.github.com/users/ScienceToolkit/repos","events_url":"https://api.github.com/users/ScienceToolkit/events{/privacy}","received_events_url":"https://api.github.com/users/ScienceToolkit/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"ScienceToolkit","id":13035945,"node_id":"MDQ6VXNlcjEzMDM1OTQ1","avatar_url":"https://avatars2.githubusercontent.com/u/13035945?v=4","gravatar_id":"","url":"https://api.github.com/users/ScienceToolkit","html_url":"https://github.com/ScienceToolkit","followers_url":"https://api.github.com/users/ScienceToolkit/followers","following_url":"https://api.github.com/users/ScienceToolkit/following{/other_user}","gists_url":"https://api.github.com/users/ScienceToolkit/gists{/gist_id}","starred_url":"https://api.github.com/users/ScienceToolkit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ScienceToolkit/subscriptions","organizations_url":"https://api.github.com/users/ScienceToolkit/orgs","repos_url":"https://api.github.com/users/ScienceToolkit/repos","events_url":"https://api.github.com/users/ScienceToolkit/events{/privacy}","received_events_url":"https://api.github.com/users/ScienceToolkit/received_events","type":"User","site_admin":false},"assignees":[{"login":"ScienceToolkit","id":13035945,"node_id":"MDQ6VXNlcjEzMDM1OTQ1","avatar_url":"https://avatars2.githubusercontent.com/u/13035945?v=4","gravatar_id":"","url":"https://api.github.com/users/ScienceToolkit","html_url":"https://github.com/ScienceToolkit","followers_url":"https://api.github.com/users/ScienceToolkit/followers","following_url":"https://api.github.com/users/ScienceToolkit/following{/other_user}","gists_url":"https://api.github.com/users/ScienceToolkit/gists{/gist_id}","starred_url":"https://api.github.com/users/ScienceToolkit/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ScienceToolkit/subscriptions","organizations_url":"https://api.github.com/users/ScienceToolkit/orgs","repos_url":"https://api.github.com/users/ScienceToolkit/repos","events_url":"https://api.github.com/users/ScienceToolkit/events{/privacy}","received_events_url":"https://api.github.com/users/ScienceToolkit/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-02-12T18:38:46Z","updated_at":"2018-06-03T16:41:21Z","closed_at":"2018-06-03T16:41:21Z","author_association":"OWNER","body":"The thresholding method selection on the settings dialog does __not__ alter the method used in analysis as expected. This issue was found while processing a 2D image and has been reproduced on a 3D stack as well. \r\n\r\n_Potential Fix_: \r\nSeparate the method selection from the binarization step. Need to dig up the documentation on this command to see why this is.\r\n__From__:\r\n```javascript\r\nrun(\"Make Binary\", \"method=\" + THRESHOLD_METHOD + \" background=Dark\");\r\n```\r\n__To:__\r\n```javascript\r\nsetAutoThreshold(THRESHOLD_METHOD)\r\nrun(\"Make Binary\", \" background=Dark\");\r\n```"}}
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