{"action":"opened","issue":{"url":"https://api.github.com/repos/cmap/cmapM/issues/4","repository_url":"https://api.github.com/repos/cmap/cmapM","labels_url":"https://api.github.com/repos/cmap/cmapM/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/cmap/cmapM/issues/4/comments","events_url":"https://api.github.com/repos/cmap/cmapM/issues/4/events","html_url":"https://github.com/cmap/cmapM/issues/4","id":302730211,"number":4,"title":"From Zendesk. Cannot parse GSE70138_Broad_LINCS_Level5_COMPZ_n118050x12328.gctx","user":{"login":"jasiedu","id":584708,"avatar_url":"https://avatars2.githubusercontent.com/u/584708?v=4","gravatar_id":"","url":"https://api.github.com/users/jasiedu","html_url":"https://github.com/jasiedu","followers_url":"https://api.github.com/users/jasiedu/followers","following_url":"https://api.github.com/users/jasiedu/following{/other_user}","gists_url":"https://api.github.com/users/jasiedu/gists{/gist_id}","starred_url":"https://api.github.com/users/jasiedu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jasiedu/subscriptions","organizations_url":"https://api.github.com/users/jasiedu/orgs","repos_url":"https://api.github.com/users/jasiedu/repos","events_url":"https://api.github.com/users/jasiedu/events{/privacy}","received_events_url":"https://api.github.com/users/jasiedu/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-03-06T14:49:13Z","updated_at":"2018-03-06T14:49:13Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nI try to parse level 5 file downloaded from GEO using cMapM in Matlab2017b and get this error :\r\n\r\ngctx_file_location = fullfile(cmapmpath, 'resources', 'GSE70138_Broad_LINCS_Level5_COMPZ_n118050x12328.gctx'); \r\n>> ds2 = cmapm.Pipeline.parse_gctx(gctx_file_location); \r\nError using hdf5lib2 \r\nThe filename specified was either not found on the MATLAB path or it contains unsupported characters.\r\n\r\nError in H5F.open (line 48) \r\nfile_id = H5ML.hdf5lib2('H5Fopen', filename, flags, fapl);\r\n\r\nError in parse_gctx (line 73) \r\nfid = H5F.open(dsfile, 'H5F_ACC_RDONLY', 'H5P_DEFAULT');\r\n\r\nError in cmapm.Pipeline.parse_gctx (line 45) \r\nds = parse_gctx(dsfile, varargin{:});\r\n\r\nThanks, \r\nShoval"}}
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