{"action":"created","issue":{"url":"https://api.github.com/repos/mothur/mothur/issues/480","repository_url":"https://api.github.com/repos/mothur/mothur","labels_url":"https://api.github.com/repos/mothur/mothur/issues/480/labels{/name}","comments_url":"https://api.github.com/repos/mothur/mothur/issues/480/comments","events_url":"https://api.github.com/repos/mothur/mothur/issues/480/events","html_url":"https://github.com/mothur/mothur/issues/480","id":336307579,"node_id":"MDU6SXNzdWUzMzYzMDc1Nzk=","number":480,"title":"make.contigs too few entries in groups file","user":{"login":"Shellfishgene","id":1769465,"node_id":"MDQ6VXNlcjE3Njk0NjU=","avatar_url":"https://avatars1.githubusercontent.com/u/1769465?v=4","gravatar_id":"","url":"https://api.github.com/users/Shellfishgene","html_url":"https://github.com/Shellfishgene","followers_url":"https://api.github.com/users/Shellfishgene/followers","following_url":"https://api.github.com/users/Shellfishgene/following{/other_user}","gists_url":"https://api.github.com/users/Shellfishgene/gists{/gist_id}","starred_url":"https://api.github.com/users/Shellfishgene/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Shellfishgene/subscriptions","organizations_url":"https://api.github.com/users/Shellfishgene/orgs","repos_url":"https://api.github.com/users/Shellfishgene/repos","events_url":"https://api.github.com/users/Shellfishgene/events{/privacy}","received_events_url":"https://api.github.com/users/Shellfishgene/received_events","type":"User","site_admin":false},"labels":[{"id":168311579,"node_id":"MDU6TGFiZWwxNjgzMTE1Nzk=","url":"https://api.github.com/repos/mothur/mothur/labels/Bugs","name":"Bugs","color":"e11d21","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/mothur/mothur/milestones/10","html_url":"https://github.com/mothur/mothur/milestone/10","labels_url":"https://api.github.com/repos/mothur/mothur/milestones/10/labels","id":2685202,"node_id":"MDk6TWlsZXN0b25lMjY4NTIwMg==","number":10,"title":"Version 1.41.0","description":"","creator":{"login":"mothur-westcott","id":1379958,"node_id":"MDQ6VXNlcjEzNzk5NTg=","avatar_url":"https://avatars3.githubusercontent.com/u/1379958?v=4","gravatar_id":"","url":"https://api.github.com/users/mothur-westcott","html_url":"https://github.com/mothur-westcott","followers_url":"https://api.github.com/users/mothur-westcott/followers","following_url":"https://api.github.com/users/mothur-westcott/following{/other_user}","gists_url":"https://api.github.com/users/mothur-westcott/gists{/gist_id}","starred_url":"https://api.github.com/users/mothur-westcott/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mothur-westcott/subscriptions","organizations_url":"https://api.github.com/users/mothur-westcott/orgs","repos_url":"https://api.github.com/users/mothur-westcott/repos","events_url":"https://api.github.com/users/mothur-westcott/events{/privacy}","received_events_url":"https://api.github.com/users/mothur-westcott/received_events","type":"User","site_admin":false},"open_issues":26,"closed_issues":16,"state":"open","created_at":"2017-08-07T12:59:41Z","updated_at":"2018-08-02T14:18:38Z","due_on":null,"closed_at":null},"comments":4,"created_at":"2018-06-27T16:46:19Z","updated_at":"2018-08-10T12:34:54Z","closed_at":null,"author_association":"NONE","body":"Hi! I just tried to run ```make.contigs``` with a large dataset, but the groups file it produced always had a few thousand entries missing in comparison to the fasta file, so ```count.seqs``` throws errors. ```make.contigs``` itself finished without errors. I tried it three times with version 1.40.5 (using gzipped files) with the same result. Using version 1.40.4 (unzipping the fastqs first) it works as expected, with the same command.\r\nSorry I can't provide a test case, the dataset is very large and I'd have to figure out which reads cause this first."},"comment":{"url":"https://api.github.com/repos/mothur/mothur/issues/comments/412069076","html_url":"https://github.com/mothur/mothur/issues/480#issuecomment-412069076","issue_url":"https://api.github.com/repos/mothur/mothur/issues/480","id":412069076,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMjA2OTA3Ng==","user":{"login":"mothur-westcott","id":1379958,"node_id":"MDQ6VXNlcjEzNzk5NTg=","avatar_url":"https://avatars3.githubusercontent.com/u/1379958?v=4","gravatar_id":"","url":"https://api.github.com/users/mothur-westcott","html_url":"https://github.com/mothur-westcott","followers_url":"https://api.github.com/users/mothur-westcott/followers","following_url":"https://api.github.com/users/mothur-westcott/following{/other_user}","gists_url":"https://api.github.com/users/mothur-westcott/gists{/gist_id}","starred_url":"https://api.github.com/users/mothur-westcott/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mothur-westcott/subscriptions","organizations_url":"https://api.github.com/users/mothur-westcott/orgs","repos_url":"https://api.github.com/users/mothur-westcott/repos","events_url":"https://api.github.com/users/mothur-westcott/events{/privacy}","received_events_url":"https://api.github.com/users/mothur-westcott/received_events","type":"User","site_admin":false},"created_at":"2018-08-10T12:34:54Z","updated_at":"2018-08-10T12:34:54Z","author_association":"CONTRIBUTOR","body":"Thanks for the extra information. I will take a closer look."}}
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