{"action":"closed","issue":{"url":"https://api.github.com/repos/lh3/minimap2/issues/139","repository_url":"https://api.github.com/repos/lh3/minimap2","labels_url":"https://api.github.com/repos/lh3/minimap2/issues/139/labels{/name}","comments_url":"https://api.github.com/repos/lh3/minimap2/issues/139/comments","events_url":"https://api.github.com/repos/lh3/minimap2/issues/139/events","html_url":"https://github.com/lh3/minimap2/issues/139","id":308469622,"node_id":"MDU6SXNzdWUzMDg0Njk2MjI=","number":139,"title":"--MD tag log failure","user":{"login":"clalogiudice","id":18420162,"node_id":"MDQ6VXNlcjE4NDIwMTYy","avatar_url":"https://avatars3.githubusercontent.com/u/18420162?v=4","gravatar_id":"","url":"https://api.github.com/users/clalogiudice","html_url":"https://github.com/clalogiudice","followers_url":"https://api.github.com/users/clalogiudice/followers","following_url":"https://api.github.com/users/clalogiudice/following{/other_user}","gists_url":"https://api.github.com/users/clalogiudice/gists{/gist_id}","starred_url":"https://api.github.com/users/clalogiudice/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/clalogiudice/subscriptions","organizations_url":"https://api.github.com/users/clalogiudice/orgs","repos_url":"https://api.github.com/users/clalogiudice/repos","events_url":"https://api.github.com/users/clalogiudice/events{/privacy}","received_events_url":"https://api.github.com/users/clalogiudice/received_events","type":"User","site_admin":false},"labels":[{"id":845569288,"node_id":"MDU6TGFiZWw4NDU1NjkyODg=","url":"https://api.github.com/repos/lh3/minimap2/labels/feature-request","name":"feature-request","color":"c6ffb2","default":false}],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":8,"created_at":"2018-03-26T08:05:01Z","updated_at":"2018-08-22T14:50:51Z","closed_at":"2018-08-22T14:50:50Z","author_association":"NONE","body":"Hello everybody,\r\nI am trying to map my Pacbio reads with minimap2.\r\nTryiing to add the flag --MD causes a failure in the minimap alignment log...\r\n\r\n[M::mm_idx_gen::859.870*0.51] collected minimizers\r\n[M::mm_idx_gen::882.231*0.83] sorted minimizers\r\n[M::main::882.231*0.83] loaded/built the index for 93 target sequence(s)\r\n[M::mm_mapopt_update::886.515*0.83] mid_occ = 663\r\n[M::mm_idx_stat] kmer size: 15; skip: 5; is_hpc: 0; #seq: 93\r\n[M::mm_idx_stat::889.631*0.83] distinct minimizers: 167026627 (35.39% are singletons); average occurrences: 5.939; average spacing: 3.163\r\nminimap2: forminimap2: format.c:190: write_MD_core: Assertion `op >= 0 && op <= 2' failed.\r\n"}}
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