{"action":"created","issue":{"url":"https://api.github.com/repos/ablab/spades/issues/221","repository_url":"https://api.github.com/repos/ablab/spades","labels_url":"https://api.github.com/repos/ablab/spades/issues/221/labels{/name}","comments_url":"https://api.github.com/repos/ablab/spades/issues/221/comments","events_url":"https://api.github.com/repos/ablab/spades/issues/221/events","html_url":"https://github.com/ablab/spades/issues/221","id":386870372,"node_id":"MDU6SXNzdWUzODY4NzAzNzI=","number":221,"title":"trouble with error code -6","user":{"login":"Arno75","id":20066600,"node_id":"MDQ6VXNlcjIwMDY2NjAw","avatar_url":"https://avatars0.githubusercontent.com/u/20066600?v=4","gravatar_id":"","url":"https://api.github.com/users/Arno75","html_url":"https://github.com/Arno75","followers_url":"https://api.github.com/users/Arno75/followers","following_url":"https://api.github.com/users/Arno75/following{/other_user}","gists_url":"https://api.github.com/users/Arno75/gists{/gist_id}","starred_url":"https://api.github.com/users/Arno75/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Arno75/subscriptions","organizations_url":"https://api.github.com/users/Arno75/orgs","repos_url":"https://api.github.com/users/Arno75/repos","events_url":"https://api.github.com/users/Arno75/events{/privacy}","received_events_url":"https://api.github.com/users/Arno75/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2018-12-03T15:29:05Z","updated_at":"2018-12-12T15:50:35Z","closed_at":"2018-12-11T20:34:10Z","author_association":"NONE","body":"Hello,\r\n\r\ni've got some trouble to launch spades on data set of 80Gb in gzip compressed format.\r\n\r\nthis is my System information:\r\n  SPAdes version: 3.10.0\r\n  Python version: 2.7.5\r\n  OS: Linux-3.10.0-693.39.1.el7.x86_64-x86_64-with-redhat-7.4-Maipo\r\n\r\nmy commands line:\r\nspades.py  -k 71,99,127 -m 48 --only-assembler -t 41 --careful --pe1-1 BSI_1_1_clean.fastq.gz --pe1-2 BSI_1_2_clean.fastq.gz --pe2-1 BSI_2_1_clean.fastq.gz  --pe2-2 BSI_2_2_clean.fastq.gz  -o /ccc/scratch/cont007/fg0014/Spades_process_BIS_CD/\r\n\r\nThe issues :\r\n== Error ==  system call for: \"['/ccc/cont007/dsku/lautrec/home/app/fg/fg/products/spades-3.10.0/el7-x86_64-generic/bin/spades', '/ccc/scratch/cont007/fg0014/coulouxa/Spades_process_BIS_CD/K71/configs/config.info',\r\n '/ccc/scratch/cont007/fg0014/coulouxa/Spades_process_BIS_CD/K71/configs/careful_mode.info']\" finished abnormally, err code: -6 \r\n\r\nLog File : \r\n[spades.log](https://github.com/ablab/spades/files/2649357/spades.log)\r\n\r\n\r\nThanks in advance for your help"},"comment":{"url":"https://api.github.com/repos/ablab/spades/issues/comments/446636076","html_url":"https://github.com/ablab/spades/issues/221#issuecomment-446636076","issue_url":"https://api.github.com/repos/ablab/spades/issues/221","id":446636076,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0NjYzNjA3Ng==","user":{"login":"Arno75","id":20066600,"node_id":"MDQ6VXNlcjIwMDY2NjAw","avatar_url":"https://avatars0.githubusercontent.com/u/20066600?v=4","gravatar_id":"","url":"https://api.github.com/users/Arno75","html_url":"https://github.com/Arno75","followers_url":"https://api.github.com/users/Arno75/followers","following_url":"https://api.github.com/users/Arno75/following{/other_user}","gists_url":"https://api.github.com/users/Arno75/gists{/gist_id}","starred_url":"https://api.github.com/users/Arno75/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Arno75/subscriptions","organizations_url":"https://api.github.com/users/Arno75/orgs","repos_url":"https://api.github.com/users/Arno75/repos","events_url":"https://api.github.com/users/Arno75/events{/privacy}","received_events_url":"https://api.github.com/users/Arno75/received_events","type":"User","site_admin":false},"created_at":"2018-12-12T15:50:35Z","updated_at":"2018-12-12T15:50:35Z","author_association":"NONE","body":"\r\nI'm testing version 3.13,\r\nI'll giving you a feedback as soon as I get results"}}
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