{"action":"closed","issue":{"url":"https://api.github.com/repos/mhalushka/miRge/issues/11","repository_url":"https://api.github.com/repos/mhalushka/miRge","labels_url":"https://api.github.com/repos/mhalushka/miRge/issues/11/labels{/name}","comments_url":"https://api.github.com/repos/mhalushka/miRge/issues/11/comments","events_url":"https://api.github.com/repos/mhalushka/miRge/issues/11/events","html_url":"https://github.com/mhalushka/miRge/issues/11","id":356633519,"node_id":"MDU6SXNzdWUzNTY2MzM1MTk=","number":11,"title":"Predict error","user":{"login":"lihannan","id":42952693,"node_id":"MDQ6VXNlcjQyOTUyNjkz","avatar_url":"https://avatars0.githubusercontent.com/u/42952693?v=4","gravatar_id":"","url":"https://api.github.com/users/lihannan","html_url":"https://github.com/lihannan","followers_url":"https://api.github.com/users/lihannan/followers","following_url":"https://api.github.com/users/lihannan/following{/other_user}","gists_url":"https://api.github.com/users/lihannan/gists{/gist_id}","starred_url":"https://api.github.com/users/lihannan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lihannan/subscriptions","organizations_url":"https://api.github.com/users/lihannan/orgs","repos_url":"https://api.github.com/users/lihannan/repos","events_url":"https://api.github.com/users/lihannan/events{/privacy}","received_events_url":"https://api.github.com/users/lihannan/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":3,"created_at":"2018-09-04T02:39:29Z","updated_at":"2018-09-04T14:36:21Z","closed_at":"2018-09-04T14:36:21Z","author_association":"NONE","body":"Hi miRge devolopment team,\r\nWhen i use miRge2.0 predict, the software return an error:\r\nPerforming prediction of novel miRNAs...\r\nStart to predict\r\nTraceback (most recent call last):\r\n  File \"/data1/linan/software/anaconda2/bin/miRge2.0\", line 11, in <module>\r\n    load_entry_point('mirge==2.0', 'console_scripts', 'miRge2.0')()\r\n  File \"/data1/linan/software/anaconda2/lib/python2.7/site-packages/mirge/__main__.py\", line 626, in main\r\n    screen_precusor_candidates(outfile4+'_modified_selected_sorted_features.tsv', outfile4+'_modified_selected_sorted_features_precusor.str', i, rnafoldCmdTmp)\r\n  File \"/data1/linan/software/anaconda2/lib/python2.7/site-packages/mirge/utils/screen_precusor_candidates.py\", line 190, in screen_precusor_candidates\r\n    neighborStateLabel = content1.index('neighborState')\r\nValueError: 'neighborState' is not in list\r\n\r\nBlow is my command:\r\nmiRge2.0 predict -s SRR1044569.fastq.gz -d miRBase -pb /data1/linan/software/bowtie -lib /data1/linan/software/miRge-master_python/miRge_lib -ps /data1/linan/software/samtools19/bin -pr /data1/linan/software/ViennaRNA249/bin -sp human -ad illumina -ai -gff -cpu 10\r\n\r\nI install the software by conda. I can not find what's wrong about it, can you help me?"}}
{"actor":{"display_login":"lihannan"}}