{"action":"opened","issue":{"url":"https://api.github.com/repos/RTXteam/RTX/issues/2","repository_url":"https://api.github.com/repos/RTXteam/RTX","labels_url":"https://api.github.com/repos/RTXteam/RTX/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/RTXteam/RTX/issues/2/comments","events_url":"https://api.github.com/repos/RTXteam/RTX/issues/2/events","html_url":"https://github.com/RTXteam/RTX/issues/2","id":302537165,"number":2,"title":"Geneprof 500 response","user":{"login":"dkoslicki","id":6362936,"avatar_url":"https://avatars1.githubusercontent.com/u/6362936?v=4","gravatar_id":"","url":"https://api.github.com/users/dkoslicki","html_url":"https://github.com/dkoslicki","followers_url":"https://api.github.com/users/dkoslicki/followers","following_url":"https://api.github.com/users/dkoslicki/following{/other_user}","gists_url":"https://api.github.com/users/dkoslicki/gists{/gist_id}","starred_url":"https://api.github.com/users/dkoslicki/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dkoslicki/subscriptions","organizations_url":"https://api.github.com/users/dkoslicki/orgs","repos_url":"https://api.github.com/users/dkoslicki/repos","events_url":"https://api.github.com/users/dkoslicki/events{/privacy}","received_events_url":"https://api.github.com/users/dkoslicki/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-03-06T02:13:13Z","updated_at":"2018-03-06T02:13:13Z","closed_at":null,"author_association":"OWNER","body":"_From @erikyao on January 12, 2018 18:59_\n\nWhen running `test_geneprof_id_to_transcription_factor_gene_symbols` of `tests/QueryGeneProfTestCase`, `QueryGeneProf.geneprof_id_to_transcription_factor_gene_symbols` sometimes returns an empty set due to Genprof's 500 response.\r\n\r\nTest code:\r\n\r\n```python\r\nret_set = QueryGeneProf.geneprof_id_to_transcription_factor_gene_symbols(16269)  # 'HMOX1'\r\n```\r\n\r\nDebugging message:\r\n\r\n> HTTP response status code: 500 for URL:\r\nhttp://www.geneprof.org/GeneProf/api/gene.info/regulation/binary/by.target/human/16269.json?with-sample-info=true\r\n\r\nCause of 500 reported by Geneprof:\r\n\r\n> java.lang.OutOfMemoryError: unable to create new native thread\r\n\r\nWe may need to add exception-handling code in this case.\n\n_Copied from original issue: dkoslicki/NCATS#134_"}}
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