{"action":"created","issue":{"url":"https://api.github.com/repos/vgteam/toil-vg/issues/469","repository_url":"https://api.github.com/repos/vgteam/toil-vg","labels_url":"https://api.github.com/repos/vgteam/toil-vg/issues/469/labels{/name}","comments_url":"https://api.github.com/repos/vgteam/toil-vg/issues/469/comments","events_url":"https://api.github.com/repos/vgteam/toil-vg/issues/469/events","html_url":"https://github.com/vgteam/toil-vg/pull/469","id":309901308,"number":469,"title":"update default vg docker 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vg docker image to v1.6.0-810-g74916b4f-t147-run which should include Jordans recent vg surject fixes."},"comment":{"url":"https://api.github.com/repos/vgteam/toil-vg/issues/comments/377391872","html_url":"https://github.com/vgteam/toil-vg/pull/469#issuecomment-377391872","issue_url":"https://api.github.com/repos/vgteam/toil-vg/issues/469","id":377391872,"user":{"login":"adamnovak","id":5062495,"avatar_url":"https://avatars1.githubusercontent.com/u/5062495?v=4","gravatar_id":"","url":"https://api.github.com/users/adamnovak","html_url":"https://github.com/adamnovak","followers_url":"https://api.github.com/users/adamnovak/followers","following_url":"https://api.github.com/users/adamnovak/following{/other_user}","gists_url":"https://api.github.com/users/adamnovak/gists{/gist_id}","starred_url":"https://api.github.com/users/adamnovak/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adamnovak/subscriptions","organizations_url":"https://api.github.com/users/adamnovak/orgs","repos_url":"https://api.github.com/users/adamnovak/repos","events_url":"https://api.github.com/users/adamnovak/events{/privacy}","received_events_url":"https://api.github.com/users/adamnovak/received_events","type":"User","site_admin":false},"created_at":"2018-03-29T22:28:36Z","updated_at":"2018-03-29T22:28:36Z","author_association":"COLLABORATOR","body":"Yep, that's there because vg snarls can only handle one graph at a time.\n\nThe difference is, though, that vg index can't work on \"-\" to read from\nstandard input, because internally it uses a VGset of multiple graphs\nidentified by filenames that can be processed one at a time. I've never\nreally liked that setup, but unless we rip it out, you would need to\nconcatenate the graphs to disk and then load them from an actual file in\norder to index them with haplotypes.\n\nOn Thu, Mar 29, 2018 at 3:19 PM, Charles Markello <notifications@github.com>\nwrote:\n\n> @adamnovak <https://github.com/adamnovak>\n> It looks like you already do a similar thing here (\n> https://github.com/vgteam/toil-vg/blob/master/src/toil_vg/vg_index.py#L452\n> )\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/vgteam/toil-vg/pull/469#issuecomment-377389819>, or mute\n> the thread\n> <https://github.com/notifications/unsubscribe-auth/AE0_X9joIVqDoFfZHL1TtjEW7IHkn6boks5tjV3VgaJpZM4TA-Ta>\n> .\n>\n"}}
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