{"action":"created","issue":{"url":"https://api.github.com/repos/Magdoll/Cogent/issues/43","repository_url":"https://api.github.com/repos/Magdoll/Cogent","labels_url":"https://api.github.com/repos/Magdoll/Cogent/issues/43/labels{/name}","comments_url":"https://api.github.com/repos/Magdoll/Cogent/issues/43/comments","events_url":"https://api.github.com/repos/Magdoll/Cogent/issues/43/events","html_url":"https://github.com/Magdoll/Cogent/issues/43","id":343910858,"node_id":"MDU6SXNzdWUzNDM5MTA4NTg=","number":43,"title":"reconstruct_contig.py output files","user":{"login":"Zunaick","id":41154813,"node_id":"MDQ6VXNlcjQxMTU0ODEz","avatar_url":"https://avatars2.githubusercontent.com/u/41154813?v=4","gravatar_id":"","url":"https://api.github.com/users/Zunaick","html_url":"https://github.com/Zunaick","followers_url":"https://api.github.com/users/Zunaick/followers","following_url":"https://api.github.com/users/Zunaick/following{/other_user}","gists_url":"https://api.github.com/users/Zunaick/gists{/gist_id}","starred_url":"https://api.github.com/users/Zunaick/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Zunaick/subscriptions","organizations_url":"https://api.github.com/users/Zunaick/orgs","repos_url":"https://api.github.com/users/Zunaick/repos","events_url":"https://api.github.com/users/Zunaick/events{/privacy}","received_events_url":"https://api.github.com/users/Zunaick/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-07-24T07:07:46Z","updated_at":"2018-07-25T14:50:33Z","closed_at":null,"author_association":"NONE","body":"Hi Magdoll\r\n\r\nI was running reconstruct_contig.py for each family and have obtained four fasta files as listed for each family. \r\n\r\nin.trimmed.fa\r\ncogent.fa\r\ncogent2.renamed.fasta\r\ncogent2.fa\r\n\r\nI checked number of sequences in output for few families and found that they are same except for cogent.fa file. So, i was thinking which one is the final reconstructed contig file (as in the cases i checked number of unique transcripts in cogent2.fa is same as in in.fa file). It will be really helpful if you can help me understanding these output files.\r\n\r\nThank you"},"comment":{"url":"https://api.github.com/repos/Magdoll/Cogent/issues/comments/407782015","html_url":"https://github.com/Magdoll/Cogent/issues/43#issuecomment-407782015","issue_url":"https://api.github.com/repos/Magdoll/Cogent/issues/43","id":407782015,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzc4MjAxNQ==","user":{"login":"ClearloveMiao","id":37678675,"node_id":"MDQ6VXNlcjM3Njc4Njc1","avatar_url":"https://avatars2.githubusercontent.com/u/37678675?v=4","gravatar_id":"","url":"https://api.github.com/users/ClearloveMiao","html_url":"https://github.com/ClearloveMiao","followers_url":"https://api.github.com/users/ClearloveMiao/followers","following_url":"https://api.github.com/users/ClearloveMiao/following{/other_user}","gists_url":"https://api.github.com/users/ClearloveMiao/gists{/gist_id}","starred_url":"https://api.github.com/users/ClearloveMiao/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ClearloveMiao/subscriptions","organizations_url":"https://api.github.com/users/ClearloveMiao/orgs","repos_url":"https://api.github.com/users/ClearloveMiao/repos","events_url":"https://api.github.com/users/ClearloveMiao/events{/privacy}","received_events_url":"https://api.github.com/users/ClearloveMiao/received_events","type":"User","site_admin":false},"created_at":"2018-07-25T14:50:33Z","updated_at":"2018-07-25T14:50:33Z","author_association":"NONE","body":"Hi!\r\nAnd the file we have to use next step is `cogent2.renamed.fasta`? The other file can be deleted?\r\nThanks!"}}
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