{"action":"opened","issue":{"url":"https://api.github.com/repos/dahak-metagenomics/dahak-taco/issues/4","repository_url":"https://api.github.com/repos/dahak-metagenomics/dahak-taco","labels_url":"https://api.github.com/repos/dahak-metagenomics/dahak-taco/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/dahak-metagenomics/dahak-taco/issues/4/comments","events_url":"https://api.github.com/repos/dahak-metagenomics/dahak-taco/issues/4/events","html_url":"https://github.com/dahak-metagenomics/dahak-taco/issues/4","id":320026063,"number":4,"title":"snakemake not installing with pip install dahak_taco","user":{"login":"ljcohen","id":4043732,"avatar_url":"https://avatars2.githubusercontent.com/u/4043732?v=4","gravatar_id":"","url":"https://api.github.com/users/ljcohen","html_url":"https://github.com/ljcohen","followers_url":"https://api.github.com/users/ljcohen/followers","following_url":"https://api.github.com/users/ljcohen/following{/other_user}","gists_url":"https://api.github.com/users/ljcohen/gists{/gist_id}","starred_url":"https://api.github.com/users/ljcohen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ljcohen/subscriptions","organizations_url":"https://api.github.com/users/ljcohen/orgs","repos_url":"https://api.github.com/users/ljcohen/repos","events_url":"https://api.github.com/users/ljcohen/events{/privacy}","received_events_url":"https://api.github.com/users/ljcohen/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-05-03T18:14:18Z","updated_at":"2018-05-03T18:14:18Z","closed_at":null,"author_association":"NONE","body":"With these steps, `dahak_taco` appears to install:\r\n```\r\nconda create -n dahak python=3\r\nsource activate dahak\r\npip install dahak_taco\r\n```\r\nBut this error occurs:\r\n```\r\n(dahak) campus-014-079:~ johnsolk$ taco --help\r\nTraceback (most recent call last):\r\n  File \"/Users/johnsolk/anaconda3/envs/dahak/bin/taco\", line 7, in <module>\r\n    from cli.command import main\r\n  File \"/Users/johnsolk/anaconda3/envs/dahak/lib/python3.6/site-packages/cli/command.py\", line 3, in <module>\r\n    import snakemake\r\nModuleNotFoundError: No module named 'snakemake'\r\n```\r\nTo fix:\r\n```\r\npip install snakemake\r\n```\r\nSeems to work!\r\n```\r\n(dahak) campus-014-079:~ johnsolk$ taco --help\r\nusage: taco [-h] [--config-json CONFIG_JSON | --config-yaml CONFIG_YAML]\r\n            [--params-json PARAMS_JSON | --params-yaml PARAMS_YAML] [-c] [-f]\r\n            [-n] [--prefix PREFIX]\r\n            [verb [verb ...]]\r\n\r\npositional arguments:\r\n  verb                  The verb to perform or the name of the workflow to run\r\n\r\noptional arguments:\r\n  -h, --help            show this help message and exit\r\n  --config-json CONFIG_JSON\r\n                        Specify a workflow configuration file in JSON format\r\n  --config-yaml CONFIG_YAML\r\n                        Specify a workflow configuration file in YAML format\r\n  --params-json PARAMS_JSON\r\n                        Specify a workflow parameters file in JSON format\r\n  --params-yaml PARAMS_YAML\r\n                        Specify a workflow parameters file in YAML format\r\n  -c, --clean           Use a clean, empty default Snakemake parameters\r\n                        dictionary. Used for testing and debugging.\r\n  -f, --force           Force Snakemake to run all rules in the workflow, even\r\n                        if target files already exist.\r\n  -n, --dry-run         Do a dry run with Snakemake: assemble but do not run\r\n                        the task graph.\r\n  --prefix PREFIX       Set the working directory where all files are\r\n                        generated.\r\n```"}}
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