{"action":"created","issue":{"url":"https://api.github.com/repos/reactome/data-release-pipeline/issues/18","repository_url":"https://api.github.com/repos/reactome/data-release-pipeline","labels_url":"https://api.github.com/repos/reactome/data-release-pipeline/issues/18/labels{/name}","comments_url":"https://api.github.com/repos/reactome/data-release-pipeline/issues/18/comments","events_url":"https://api.github.com/repos/reactome/data-release-pipeline/issues/18/events","html_url":"https://github.com/reactome/data-release-pipeline/pull/18","id":389436546,"node_id":"MDExOlB1bGxSZXF1ZXN0MjM3NDI2OTU5","number":18,"title":"Feature/update stable ids","user":{"login":"cookersjs","id":19961210,"node_id":"MDQ6VXNlcjE5OTYxMjEw","avatar_url":"https://avatars0.githubusercontent.com/u/19961210?v=4","gravatar_id":"","url":"https://api.github.com/users/cookersjs","html_url":"https://github.com/cookersjs","followers_url":"https://api.github.com/users/cookersjs/followers","following_url":"https://api.github.com/users/cookersjs/following{/other_user}","gists_url":"https://api.github.com/users/cookersjs/gists{/gist_id}","starred_url":"https://api.github.com/users/cookersjs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cookersjs/subscriptions","organizations_url":"https://api.github.com/users/cookersjs/orgs","repos_url":"https://api.github.com/users/cookersjs/repos","events_url":"https://api.github.com/users/cookersjs/events{/privacy}","received_events_url":"https://api.github.com/users/cookersjs/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-12-10T18:48:38Z","updated_at":"2019-01-02T16:35:57Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/reactome/data-release-pipeline/pulls/18","html_url":"https://github.com/reactome/data-release-pipeline/pull/18","diff_url":"https://github.com/reactome/data-release-pipeline/pull/18.diff","patch_url":"https://github.com/reactome/data-release-pipeline/pull/18.patch"},"body":"Rewrite for UpdateStableIds. This excludes the 'restore_database.pl' script since that backs up the database via a mysqldump command, which we're going to incorporate into the eventual wrapper.\r\n\r\nThis script is different from the Perl version of UpdateStableIds in that it takes all instances from Event and PhysicalEntity classes, rather than specifically from Pathways, EWAS', Complexes, etc. The Java API was taking sub-classes of instances (for example GenomeEncodedEntity had ~760 instances in Perl but 30000+ in Java since 'fetchInstancesByClass' method includes all child instances, which was all EWAS' in this case). Since UpdateStableIds only updates instances under the Event and PhysicalEntity nodes, this change will also be able to properly update any new class types that qualify (such as Drugs, which weren't getting updated in the Perl version)"},"comment":{"url":"https://api.github.com/repos/reactome/data-release-pipeline/issues/comments/450913027","html_url":"https://github.com/reactome/data-release-pipeline/pull/18#issuecomment-450913027","issue_url":"https://api.github.com/repos/reactome/data-release-pipeline/issues/18","id":450913027,"node_id":"MDEyOklzc3VlQ29tbWVudDQ1MDkxMzAyNw==","user":{"login":"jweiser","id":2857592,"node_id":"MDQ6VXNlcjI4NTc1OTI=","avatar_url":"https://avatars3.githubusercontent.com/u/2857592?v=4","gravatar_id":"","url":"https://api.github.com/users/jweiser","html_url":"https://github.com/jweiser","followers_url":"https://api.github.com/users/jweiser/followers","following_url":"https://api.github.com/users/jweiser/following{/other_user}","gists_url":"https://api.github.com/users/jweiser/gists{/gist_id}","starred_url":"https://api.github.com/users/jweiser/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jweiser/subscriptions","organizations_url":"https://api.github.com/users/jweiser/orgs","repos_url":"https://api.github.com/users/jweiser/repos","events_url":"https://api.github.com/users/jweiser/events{/privacy}","received_events_url":"https://api.github.com/users/jweiser/received_events","type":"User","site_admin":false},"created_at":"2019-01-02T16:35:57Z","updated_at":"2019-01-02T16:35:57Z","author_association":"MEMBER","body":"Added a few comments, but overall it looks good to me!"}}
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