{"push_id":3156209741,"size":30,"distinct_size":1,"ref":"refs/heads/markzhang/phylo-tree-color","head":"6f9f5a8a0dd9373799a01612cf8db4938820af78","before":"ad26bef03cce71118f0d9ec1bb32a1761b90957f","commits":[{"sha":"106f9e75706e5426cfd6c598e1b8532698114ca2","author":{"name":"Tiago Carvalho","email":"7182e4651598484c897de49b55eddb04e1de18fd@users.noreply.github.com"},"message":"JIRA 760: Add to bottom margin to fit largest tooltips. (#1807)\n\nJIRA 760: Add to bottom margin to heatmap visualization to fit largest tooltips.","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/106f9e75706e5426cfd6c598e1b8532698114ca2"},{"sha":"571aba77680b05e064b242085d763a63859ca7a3","author":{"name":"Jonathan Sheu","email":"91edd161718bc5c7ce22a6f09d503cf706190cd5@users.noreply.github.com"},"message":"[Metadata] Make sample_type freetext (#1809)\n\n* Make sample_type freetext\r\n\r\n* Tweak","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/571aba77680b05e064b242085d763a63859ca7a3"},{"sha":"c633e9bc82f0b63510039dc68482bee251e9952c","author":{"name":"Charles de Bourcy","email":"1e69e356f5195186c8903057f0c94072427782c1@chanzuckerberg.com"},"message":"count reads per month (#1798)\n\n* count reads per month\r\n\r\n* fix comment\r\n\r\n* fix comment\r\n\r\n* fix comment\r\n\r\n* fix bug","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/c633e9bc82f0b63510039dc68482bee251e9952c"},{"sha":"632492efa2830af2180b162731492506b4644644","author":{"name":"Eduardo Lopez","email":"e0c544b95084481c21fb36fb94ab9ccebb5a446d@chanzuckerberg.com"},"message":"Makes the bin/shell and bin/clam scripts compatible with bless (#1811)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/632492efa2830af2180b162731492506b4644644"},{"sha":"abb3cdf6637005aeca6a61eafd1a4ed4652853d2","author":{"name":"jameshowardwang","email":"aa345e569f92d1ac00f3caf8643d7e3b07af5b3a@chanzuckerberg.com"},"message":"Remove unused samples attrs (#1808)\n\n* Removing references to job_queue and sample_memory from samples and host_genomes\r\n\r\n* Adding migration files\r\n\r\n* re-add job_queue parameter for aegea_batch_submit_command\r\n\r\n* Renaming HOSTFILTERING_MEMORY_IN_MB to POSTPROCESSING_MEMORY_IN_MB to be less confusing","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/abb3cdf6637005aeca6a61eafd1a4ed4652853d2"},{"sha":"abcac6ec7484b7086fa02f2febbaec838d71b86d","author":{"name":"Tiago Carvalho","email":"7182e4651598484c897de49b55eddb04e1de18fd@users.noreply.github.com"},"message":"Consolidate raw metadata values. (#1812)\n\n* Consolidate metadata raw values.\r\n\r\n* Fix syntax bug.\r\n\r\n* Undo add date type.\r\n\r\n* Remove trailing space.\r\n\r\n* Remove raw value number validation and replace by validation when assigning.\r\n\r\n* Remove redundant begin.\r\n\r\n* Delete metadata entry when single value is empty.\r\n\r\n* Fix schema.rb\r\n\r\n* fix parentheses.","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/abcac6ec7484b7086fa02f2febbaec838d71b86d"},{"sha":"11d3b96b14180a3c5a68df6921ccaba2e181cbed","author":{"name":"jameshowardwang","email":"aa345e569f92d1ac00f3caf8643d7e3b07af5b3a@chanzuckerberg.com"},"message":"Add more info to pipeline_monitor errors and don't allow a divide by 0 for frac (#1814)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/11d3b96b14180a3c5a68df6921ccaba2e181cbed"},{"sha":"a196837b0c52cd1b205ab3e024714479da3b09b8","author":{"name":"Charles de Bourcy","email":"1e69e356f5195186c8903057f0c94072427782c1@chanzuckerberg.com"},"message":"deploy 2018-12-01 index (#1810)\n\n* count reads per month\r\n\r\n* fix comment\r\n\r\n* fix comment\r\n\r\n* fix comment\r\n\r\n* fix bug\r\n\r\n* deply 2018-12-01 index\r\n\r\n* phage taxids\r\n\r\n* phage taxids\r\n\r\n* schema\r\n\r\n* schema\r\n\r\n* skip validations\r\n\r\n* skip validations","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/a196837b0c52cd1b205ab3e024714479da3b09b8"},{"sha":"ddb2464da2c6333e93435c9397de68b763b16c62","author":{"name":"Mark Zhang","email":"5145f90958bc6ac5b2bc1f3735295ad19e787af7@gmail.com"},"message":"Add Contig and Contig Reads columns to sample table. (#1813)\n\nAlso add min contig size filter.\r\nOnly show the new columns for Pipeline 3.1 and above.\r\nRe-distribute the width of the columns to fit the new columns.\r\nEnable sorting of the new columns.\r\nReload automatically when user sets a new min contig size.\r\nEnable filtering by threshold for the new columns.\r\nAdd help tooltip.","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/ddb2464da2c6333e93435c9397de68b763b16c62"},{"sha":"5da0d57de14031daca28f42821ce901efae1c480","author":{"name":"Jonathan Sheu","email":"91edd161718bc5c7ce22a6f09d503cf706190cd5@users.noreply.github.com"},"message":"Fix host filtering to himem settings (#1817)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/5da0d57de14031daca28f42821ce901efae1c480"},{"sha":"a308b126262b54a3c306cfcbb42ecdc58c3f84a1","author":{"name":"Tiago Carvalho","email":"7182e4651598484c897de49b55eddb04e1de18fd@users.noreply.github.com"},"message":"Add date type (#1815)\n\n* Define new metadata type to hold dates (e.g. for collection_date)\r\n* Add new date picker to choose values for the new date type\r\n\r\n![date_picker](https://user-images.githubusercontent.com/37312125/49970886-9b377600-fee1-11e8-9e9e-12152cc4aaeb.gif)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/a308b126262b54a3c306cfcbb42ecdc58c3f84a1"},{"sha":"4401b7ee8773a9b1d6d7d1331afce3e24045257c","author":{"name":"Tiago Carvalho","email":"7182e4651598484c897de49b55eddb04e1de18fd@users.noreply.github.com"},"message":"Sort by metadata field when clicking on the metadata label (clustered otherwise). (#1818)\n\n* Consolidate metadata raw values.\r\n\r\n* Fix syntax bug.\r\n\r\n* Start adding date type.\r\n\r\n* Added date field.\r\n\r\n* Add date type and date picker.\r\n\r\n* Fixes\r\n\r\n* Fix schema.rb.\r\n\r\n* Fix onChange and onBlur behavior.\r\n\r\n* Fix popup position.\r\n\r\n* remove unneeded code.\r\n\r\n* Rubocop fixes.\r\n\r\n* Fix bugs.\r\n\r\n* Fix bugs.\r\n\r\n* FIx tests.\r\n\r\n* Sort metadata fields on click.\r\n\r\n* Sort by metadata (ascending, descending)\r\n\r\n* Remove cluster when sorted by metadata.","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/4401b7ee8773a9b1d6d7d1331afce3e24045257c"},{"sha":"ee9d6425224635cb2a4fdf52c68bc0e3bfe0f069","author":{"name":"Jonathan Sheu","email":"91edd161718bc5c7ce22a6f09d503cf706190cd5@users.noreply.github.com"},"message":"Remove mosquito restrictions (#1819)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/ee9d6425224635cb2a4fdf52c68bc0e3bfe0f069"},{"sha":"684bcd1030bca94724ae492380c65455d031917b","author":{"name":"Jonathan Sheu","email":"91edd161718bc5c7ce22a6f09d503cf706190cd5@users.noreply.github.com"},"message":"Fix up metadata migrations (#1820)\n\n* Fix up migration state\r\n\r\n* Fix schema\r\n\r\n* Fix typo","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/684bcd1030bca94724ae492380c65455d031917b"},{"sha":"3089cce15ad56daf7e6b9d5795b4167cbaad718d","author":{"name":"Charles de Bourcy","email":"1e69e356f5195186c8903057f0c94072427782c1@chanzuckerberg.com"},"message":"download AMR results in bulk (#1816)\n\n* task to download AMR results in bulk\r\n\r\n* task to download AMR results in bulk\r\n\r\n* Update download_amr_for_project.rake","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/3089cce15ad56daf7e6b9d5795b4167cbaad718d"},{"sha":"7a1e0fbb76588714bbb9f8f158cfa7d677a354ea","author":{"name":"Mark Zhang","email":"5145f90958bc6ac5b2bc1f3735295ad19e787af7@gmail.com"},"message":"Heatmap now also updates when metadata is updated in sidebar. (#1822)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/7a1e0fbb76588714bbb9f8f158cfa7d677a354ea"},{"sha":"97029f4046e2b524831a503e03bab1d184b9299e","author":{"name":"Jonathan Sheu","email":"91edd161718bc5c7ce22a6f09d503cf706190cd5@users.noreply.github.com"},"message":"Update pipeline check for if the latest rerun fails (#1823)","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/97029f4046e2b524831a503e03bab1d184b9299e"},{"sha":"88656e924490e764c127b11d4e95d8c0ac2d3798","author":{"name":"jameshowardwang","email":"aa345e569f92d1ac00f3caf8643d7e3b07af5b3a@chanzuckerberg.com"},"message":"No downloads of homo sapiens contigs (#1825)\n\n* Remove ability to retrieve contigs / reads for homo sapiens\r\n\r\n* some more spots","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/88656e924490e764c127b11d4e95d8c0ac2d3798"},{"sha":"451522278394349f3da97393c3e781d67310ce97","author":{"name":"Jonathan Sheu","email":"91edd161718bc5c7ce22a6f09d503cf706190cd5@users.noreply.github.com"},"message":"[Metadata Sidebar] Add pipelineVersion for version switcher (#1821)\n\n* Clean up\r\n\r\n* Tweak\r\n\r\n* Use lodash get","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/451522278394349f3da97393c3e781d67310ce97"},{"sha":"3413f13324d21b56946a648e3ac593aa5f495e4c","author":{"name":"Mark Zhang","email":"5145f90958bc6ac5b2bc1f3735295ad19e787af7@gmail.com"},"message":"Fix bug where heatmap broke if filter returned no rows. (#1824)\n\nPreviously, if a filter returned no matching rows, the sample objects wouldn't be passed\r\nback in the request.\r\n\r\nSamplesHeatmapView overwrote its current sample ids with whatever sample ids were passed back,\r\nwhich means that after an empty filter, the sample ids permanently disappeared from\r\nthe heatmap view.\r\n\r\nTo fix this, we make sure SamplesHeatmapView preserves its original sample ids, regardless of what\r\nis passed back in the data request.\r\n\r\nWe also have the samples_taxon endpoint pass back the samples (minus the taxon list) even if taxon_ids\r\nis empty. This is so that the heatmap view can correctly compute the set of host genomes in the samples\r\nwhen the page loads.","distinct":false,"url":"https://api.github.com/repos/chanzuckerberg/idseq-web/commits/3413f13324d21b56946a648e3ac593aa5f495e4c"}]}
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