{"action":"created","issue":{"url":"https://api.github.com/repos/hemberg-lab/SC3/issues/80","repository_url":"https://api.github.com/repos/hemberg-lab/SC3","labels_url":"https://api.github.com/repos/hemberg-lab/SC3/issues/80/labels{/name}","comments_url":"https://api.github.com/repos/hemberg-lab/SC3/issues/80/comments","events_url":"https://api.github.com/repos/hemberg-lab/SC3/issues/80/events","html_url":"https://github.com/hemberg-lab/SC3/issues/80","id":363404457,"node_id":"MDU6SXNzdWUzNjM0MDQ0NTc=","number":80,"title":"Small suggestion for sc3_prepare() documentation","user":{"login":"PeteHaitch","id":1049741,"node_id":"MDQ6VXNlcjEwNDk3NDE=","avatar_url":"https://avatars0.githubusercontent.com/u/1049741?v=4","gravatar_id":"","url":"https://api.github.com/users/PeteHaitch","html_url":"https://github.com/PeteHaitch","followers_url":"https://api.github.com/users/PeteHaitch/followers","following_url":"https://api.github.com/users/PeteHaitch/following{/other_user}","gists_url":"https://api.github.com/users/PeteHaitch/gists{/gist_id}","starred_url":"https://api.github.com/users/PeteHaitch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/PeteHaitch/subscriptions","organizations_url":"https://api.github.com/users/PeteHaitch/orgs","repos_url":"https://api.github.com/users/PeteHaitch/repos","events_url":"https://api.github.com/users/PeteHaitch/events{/privacy}","received_events_url":"https://api.github.com/users/PeteHaitch/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-09-25T04:21:25Z","updated_at":"2018-10-08T17:39:56Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nThanks for your work developing **SC3**!\r\n\r\nIt might be worth noting that `sc3_prepare()` adds the `sc3_gene_filter` column to `rowData(object)` if `gene_filter = TRUE` (in addition to creating and populating the `metadata(object)`).\r\nI had trouble tracking down an error (a user error on my part) because I ran `sc3_estimate_k()` before and after running `sc_prepare()` and obtained different values due to the `gene_filter`; I couldn't figure out how to reconcile the two result based on the docs but realised the source (and my error) once  I compared the before/after objects using `all.equal()`.\r\n\r\n\r\nCheers,\r\nPete"},"comment":{"url":"https://api.github.com/repos/hemberg-lab/SC3/issues/comments/427919943","html_url":"https://github.com/hemberg-lab/SC3/issues/80#issuecomment-427919943","issue_url":"https://api.github.com/repos/hemberg-lab/SC3/issues/80","id":427919943,"node_id":"MDEyOklzc3VlQ29tbWVudDQyNzkxOTk0Mw==","user":{"login":"wikiselev","id":2342606,"node_id":"MDQ6VXNlcjIzNDI2MDY=","avatar_url":"https://avatars2.githubusercontent.com/u/2342606?v=4","gravatar_id":"","url":"https://api.github.com/users/wikiselev","html_url":"https://github.com/wikiselev","followers_url":"https://api.github.com/users/wikiselev/followers","following_url":"https://api.github.com/users/wikiselev/following{/other_user}","gists_url":"https://api.github.com/users/wikiselev/gists{/gist_id}","starred_url":"https://api.github.com/users/wikiselev/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wikiselev/subscriptions","organizations_url":"https://api.github.com/users/wikiselev/orgs","repos_url":"https://api.github.com/users/wikiselev/repos","events_url":"https://api.github.com/users/wikiselev/events{/privacy}","received_events_url":"https://api.github.com/users/wikiselev/received_events","type":"User","site_admin":false},"created_at":"2018-10-08T17:39:56Z","updated_at":"2018-10-08T17:39:56Z","author_association":"MEMBER","body":"Hi Pete, thanks for your feedback! Could you please create a pull request? (sorry, I literally have no time to work on `SC3` anymore...)"}}
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