{"action":"created","issue":{"url":"https://api.github.com/repos/ergs/transmutagen-paper/issues/2","repository_url":"https://api.github.com/repos/ergs/transmutagen-paper","labels_url":"https://api.github.com/repos/ergs/transmutagen-paper/issues/2/labels{/name}","comments_url":"https://api.github.com/repos/ergs/transmutagen-paper/issues/2/comments","events_url":"https://api.github.com/repos/ergs/transmutagen-paper/issues/2/events","html_url":"https://github.com/ergs/transmutagen-paper/issues/2","id":303887062,"number":2,"title":"Cannot find pwru50_400000000000000","user":{"login":"scopatz","id":320553,"avatar_url":"https://avatars2.githubusercontent.com/u/320553?v=4","gravatar_id":"","url":"https://api.github.com/users/scopatz","html_url":"https://github.com/scopatz","followers_url":"https://api.github.com/users/scopatz/followers","following_url":"https://api.github.com/users/scopatz/following{/other_user}","gists_url":"https://api.github.com/users/scopatz/gists{/gist_id}","starred_url":"https://api.github.com/users/scopatz/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/scopatz/subscriptions","organizations_url":"https://api.github.com/users/scopatz/orgs","repos_url":"https://api.github.com/users/scopatz/repos","events_url":"https://api.github.com/users/scopatz/events{/privacy}","received_events_url":"https://api.github.com/users/scopatz/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2018-03-09T15:53:15Z","updated_at":"2018-03-09T20:59:04Z","closed_at":"2018-03-09T20:59:04Z","author_association":"OWNER","body":"When I try to run make, I see the following error:\r\n\r\n```console\r\nscopatz@artemis ~/transmutagen-paper master $ env TRANSMUTAGEN_DATA=~/transmutagen-data TRANSMUTAGEN=~/transmutagen/transmutagen make\r\npython -m transmutagen.analysis --eigenvals --no-title --file eigenvals.pdf --pwru50-data=/home/scopatz/transmutagen/transmutagen/data/pwru50_400000000000000.0.npz\r\nTraceback (most recent call last):\r\n  File \"/home/scopatz/miniconda/lib/python3.6/runpy.py\", line 193, in _run_module_as_main\r\n    \"__main__\", mod_spec)\r\n  File \"/home/scopatz/miniconda/lib/python3.6/runpy.py\", line 85, in _run_code\r\n    exec(code, run_globals)\r\n  File \"/home/scopatz/.local/lib/python3.6/site-packages/transmutagen-1.1.0+80.g25d24cd-py3.6.egg/transmutagen/analysis.py\", line 1128, in <module>\r\n    analyze()\r\n  File \"/home/scopatz/.local/lib/python3.6/site-packages/transmutagen-1.1.0+80.g25d24cd-py3.6.egg/transmutagen/analysis.py\", line 1114, in analyze\r\n    file=args.file, title=args.title)\r\n  File \"/home/scopatz/.local/lib/python3.6/site-packages/transmutagen-1.1.0+80.g25d24cd-py3.6.egg/transmutagen/analysis.py\", line 396, in analyze_eigenvals\r\n    nucs, matpwru50 = load_sparse_csr(pwru50_data)\r\n  File \"/home/scopatz/.local/lib/python3.6/site-packages/transmutagen-1.1.0+80.g25d24cd-py3.6.egg/transmutagen/util.py\", line 268, in load_sparse_csr\r\n    loader = np.load(filename)\r\n  File \"/home/scopatz/miniconda/lib/python3.6/site-packages/numpy/lib/npyio.py\", line 372, in load\r\n    fid = open(file, \"rb\")\r\nFileNotFoundError: [Errno 2] No such file or directory: '/home/scopatz/transmutagen/transmutagen/data/pwru50_400000000000000.0.npz'\r\nmake: *** [Makefile:25: eigenvals_pwru50.pdf] Error 1\r\n```\r\n\r\nThis is because the TRANSMUTAGEN variable in the Makefile seems like it should be pointing to the transmutagen dir, rather than the tranmutagen package.  This is pretty confusing and it would be great if it could be made more clear."},"comment":{"url":"https://api.github.com/repos/ergs/transmutagen-paper/issues/comments/371943242","html_url":"https://github.com/ergs/transmutagen-paper/issues/2#issuecomment-371943242","issue_url":"https://api.github.com/repos/ergs/transmutagen-paper/issues/2","id":371943242,"user":{"login":"asmeurer","id":71486,"avatar_url":"https://avatars3.githubusercontent.com/u/71486?v=4","gravatar_id":"","url":"https://api.github.com/users/asmeurer","html_url":"https://github.com/asmeurer","followers_url":"https://api.github.com/users/asmeurer/followers","following_url":"https://api.github.com/users/asmeurer/following{/other_user}","gists_url":"https://api.github.com/users/asmeurer/gists{/gist_id}","starred_url":"https://api.github.com/users/asmeurer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/asmeurer/subscriptions","organizations_url":"https://api.github.com/users/asmeurer/orgs","repos_url":"https://api.github.com/users/asmeurer/repos","events_url":"https://api.github.com/users/asmeurer/events{/privacy}","received_events_url":"https://api.github.com/users/asmeurer/received_events","type":"User","site_admin":false},"created_at":"2018-03-09T20:59:04Z","updated_at":"2018-03-09T20:59:04Z","author_association":"CONTRIBUTOR","body":"Ah, it's actually a bug in the Makefile. It used to require that data directory, until I checked it in. If you pull this should work. "}}
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