{"action":"opened","issue":{"url":"https://api.github.com/repos/ascendo/DCBLAST/issues/4","repository_url":"https://api.github.com/repos/ascendo/DCBLAST","labels_url":"https://api.github.com/repos/ascendo/DCBLAST/issues/4/labels{/name}","comments_url":"https://api.github.com/repos/ascendo/DCBLAST/issues/4/comments","events_url":"https://api.github.com/repos/ascendo/DCBLAST/issues/4/events","html_url":"https://github.com/ascendo/DCBLAST/issues/4","id":394787215,"node_id":"MDU6SXNzdWUzOTQ3ODcyMTU=","number":4,"title":"Support for Torque/PBS","user":{"login":"mmokrejs","id":3297852,"node_id":"MDQ6VXNlcjMyOTc4NTI=","avatar_url":"https://avatars1.githubusercontent.com/u/3297852?v=4","gravatar_id":"","url":"https://api.github.com/users/mmokrejs","html_url":"https://github.com/mmokrejs","followers_url":"https://api.github.com/users/mmokrejs/followers","following_url":"https://api.github.com/users/mmokrejs/following{/other_user}","gists_url":"https://api.github.com/users/mmokrejs/gists{/gist_id}","starred_url":"https://api.github.com/users/mmokrejs/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mmokrejs/subscriptions","organizations_url":"https://api.github.com/users/mmokrejs/orgs","repos_url":"https://api.github.com/users/mmokrejs/repos","events_url":"https://api.github.com/users/mmokrejs/events{/privacy}","received_events_url":"https://api.github.com/users/mmokrejs/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-12-29T11:19:55Z","updated_at":"2018-12-29T11:19:55Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n  I would like to use dcblast to submit jobs to PBSpro. It could use a template file and replace the variables. For my purposes the following template would be enough.\r\n\r\n```\r\n#PBS -S $my_shell\r\n#PBS -q $queue_name\r\n#PBS -N ${job_prefix}_${chunk_id}\r\n#PBS -l select=1:ncpus=24,walltime=144:00:00\r\n#PBS -A $project_name\r\n#PBS -M $email\r\n#PBS -m ea\r\n\r\ncd $PBS_O_WORKDIR || exit 255\r\n\r\n$blastcmd\" \"${args}\" \"${other_user_opts}\"\r\n```\r\n\r\nThe command to submit a job is:\r\n\r\n`qsub \"${pbs_script_filename}\"`"}}
{"actor":{"display_login":"mmokrejs"}}