{"action":"created","issue":{"url":"https://api.github.com/repos/Cibiv/IQ-TREE/issues/47","repository_url":"https://api.github.com/repos/Cibiv/IQ-TREE","labels_url":"https://api.github.com/repos/Cibiv/IQ-TREE/issues/47/labels{/name}","comments_url":"https://api.github.com/repos/Cibiv/IQ-TREE/issues/47/comments","events_url":"https://api.github.com/repos/Cibiv/IQ-TREE/issues/47/events","html_url":"https://github.com/Cibiv/IQ-TREE/issues/47","id":279705891,"node_id":"MDU6SXNzdWUyNzk3MDU4OTE=","number":47,"title":"Implement transfer bootstrap expectation (TBE)","user":{"login":"bqminh","id":14890963,"node_id":"MDQ6VXNlcjE0ODkwOTYz","avatar_url":"https://avatars0.githubusercontent.com/u/14890963?v=4","gravatar_id":"","url":"https://api.github.com/users/bqminh","html_url":"https://github.com/bqminh","followers_url":"https://api.github.com/users/bqminh/followers","following_url":"https://api.github.com/users/bqminh/following{/other_user}","gists_url":"https://api.github.com/users/bqminh/gists{/gist_id}","starred_url":"https://api.github.com/users/bqminh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bqminh/subscriptions","organizations_url":"https://api.github.com/users/bqminh/orgs","repos_url":"https://api.github.com/users/bqminh/repos","events_url":"https://api.github.com/users/bqminh/events{/privacy}","received_events_url":"https://api.github.com/users/bqminh/received_events","type":"User","site_admin":false},"labels":[{"id":283163898,"node_id":"MDU6TGFiZWwyODMxNjM4OTg=","url":"https://api.github.com/repos/Cibiv/IQ-TREE/labels/enhancement","name":"enhancement","color":"84b6eb","default":true},{"id":283163899,"node_id":"MDU6TGFiZWwyODMxNjM4OTk=","url":"https://api.github.com/repos/Cibiv/IQ-TREE/labels/help%20wanted","name":"help wanted","color":"159818","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/Cibiv/IQ-TREE/milestones/4","html_url":"https://github.com/Cibiv/IQ-TREE/milestone/4","labels_url":"https://api.github.com/repos/Cibiv/IQ-TREE/milestones/4/labels","id":2531461,"node_id":"MDk6TWlsZXN0b25lMjUzMTQ2MQ==","number":4,"title":"v1.7.0","description":null,"creator":{"login":"bqminh","id":14890963,"node_id":"MDQ6VXNlcjE0ODkwOTYz","avatar_url":"https://avatars0.githubusercontent.com/u/14890963?v=4","gravatar_id":"","url":"https://api.github.com/users/bqminh","html_url":"https://github.com/bqminh","followers_url":"https://api.github.com/users/bqminh/followers","following_url":"https://api.github.com/users/bqminh/following{/other_user}","gists_url":"https://api.github.com/users/bqminh/gists{/gist_id}","starred_url":"https://api.github.com/users/bqminh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bqminh/subscriptions","organizations_url":"https://api.github.com/users/bqminh/orgs","repos_url":"https://api.github.com/users/bqminh/repos","events_url":"https://api.github.com/users/bqminh/events{/privacy}","received_events_url":"https://api.github.com/users/bqminh/received_events","type":"User","site_admin":false},"open_issues":4,"closed_issues":0,"state":"open","created_at":"2017-05-19T13:52:19Z","updated_at":"2018-05-01T06:11:00Z","due_on":null,"closed_at":null},"comments":2,"created_at":"2017-12-06T10:44:43Z","updated_at":"2018-09-08T07:39:17Z","closed_at":null,"author_association":"MEMBER","body":"https://doi.org/10.1101/154542\r\n\r\nPers. comm. with Frederic Lemoine and Olivier Gascuel:\r\n\r\nwe have been working on a new way of computing branch supports, given a reference tree and a set of bootstrap trees. \r\n\r\nThe idea is to find, for each branch of the reference tree, the branch of each bootstrap tree that minimizes the taxa \"transfer distance\". The support of a ref branch will then be computed as 1-(the average distance over bootstrap trees)/(p-1). p being the number of taxa on the light side of this ref branch.\r\n\r\nIf you are interested and if you want more information, a preprint is available here: \r\nhttps://doi.org/10.1101/154542\r\n\r\nThe paper is otherwise under revision and should hopefully be out in the near future. \r\n\r\nWe were wondering if you think it could be interesting to integrate this new support computation in IQ-TREE?\r\nAs it is a different way of comparing reference branches to bootstrap trees, it is compatible with all methods that generate a set of bootstrap trees (classical bootstrap as well as Ultra-Fast bootstrap).\r\n\r\nWe have a C implementation of this computation here: \r\nhttps://github.com/evolbioinfo/booster\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/Cibiv/IQ-TREE/issues/comments/419620660","html_url":"https://github.com/Cibiv/IQ-TREE/issues/47#issuecomment-419620660","issue_url":"https://api.github.com/repos/Cibiv/IQ-TREE/issues/47","id":419620660,"node_id":"MDEyOklzc3VlQ29tbWVudDQxOTYyMDY2MA==","user":{"login":"bqminh","id":14890963,"node_id":"MDQ6VXNlcjE0ODkwOTYz","avatar_url":"https://avatars0.githubusercontent.com/u/14890963?v=4","gravatar_id":"","url":"https://api.github.com/users/bqminh","html_url":"https://github.com/bqminh","followers_url":"https://api.github.com/users/bqminh/followers","following_url":"https://api.github.com/users/bqminh/following{/other_user}","gists_url":"https://api.github.com/users/bqminh/gists{/gist_id}","starred_url":"https://api.github.com/users/bqminh/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bqminh/subscriptions","organizations_url":"https://api.github.com/users/bqminh/orgs","repos_url":"https://api.github.com/users/bqminh/repos","events_url":"https://api.github.com/users/bqminh/events{/privacy}","received_events_url":"https://api.github.com/users/bqminh/received_events","type":"User","site_admin":false},"created_at":"2018-09-08T07:39:17Z","updated_at":"2018-09-08T07:39:17Z","author_association":"MEMBER","body":"DONE now in latest branch!"}}
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