{"action":"closed","issue":{"url":"https://api.github.com/repos/EddyRivasLab/easel/issues/27","repository_url":"https://api.github.com/repos/EddyRivasLab/easel","labels_url":"https://api.github.com/repos/EddyRivasLab/easel/issues/27/labels{/name}","comments_url":"https://api.github.com/repos/EddyRivasLab/easel/issues/27/comments","events_url":"https://api.github.com/repos/EddyRivasLab/easel/issues/27/events","html_url":"https://github.com/EddyRivasLab/easel/issues/27","id":392840280,"node_id":"MDU6SXNzdWUzOTI4NDAyODA=","number":27,"title":"esl-fetch fails on Metaclust database","user":{"login":"BIORAK","id":9167093,"node_id":"MDQ6VXNlcjkxNjcwOTM=","avatar_url":"https://avatars3.githubusercontent.com/u/9167093?v=4","gravatar_id":"","url":"https://api.github.com/users/BIORAK","html_url":"https://github.com/BIORAK","followers_url":"https://api.github.com/users/BIORAK/followers","following_url":"https://api.github.com/users/BIORAK/following{/other_user}","gists_url":"https://api.github.com/users/BIORAK/gists{/gist_id}","starred_url":"https://api.github.com/users/BIORAK/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/BIORAK/subscriptions","organizations_url":"https://api.github.com/users/BIORAK/orgs","repos_url":"https://api.github.com/users/BIORAK/repos","events_url":"https://api.github.com/users/BIORAK/events{/privacy}","received_events_url":"https://api.github.com/users/BIORAK/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-12-20T00:52:13Z","updated_at":"2018-12-20T01:09:21Z","closed_at":"2018-12-20T01:09:21Z","author_association":"NONE","body":"I have been trying to use esl-sfetch to extract sequences from Metaclust database (https://metaclust.mmseqs.org/2018_06/). Since it requires creating SSI index file I was trying to create one but I get this output\r\n\r\nCreating SSI index for metaclust_nr.fasta...    sort: write failed: /tmp/sortVWzazq: No space left on device\r\n\r\nFailed to write keys to ssi file metaclust_nr.fasta.ssi:\r\n  external sort of primary keys failed\r\n\r\nMoreover I see these SSI files being created.\r\n\r\n-rw-r--r--. 1 rakesh sali 241G Jun 22 05:03 metaclust_nr.fasta\r\n-rw-r--r--. 1 rakesh sali    0 Dec 13 03:14 metaclust_nr.fasta.ssi.2\r\n-rw-r--r--. 1 rakesh sali  71G Dec 13 04:04 metaclust_nr.fasta.ssi.1\r\n\r\nNow when I use esl-seftch to extract sequences I get this output.\r\n\r\ngrep -v \"^#\" Cop9_msa.domtblout | awk '{print $1\"/\"$20\"-\"$21, $20, $21, $1}' | /home/rakesh/WORK/Softwares/Sequence_Alignment/hmmer3.2source/hmmer-3.2.1/easel/miniapps/esl-sfetch -Cf /salilab/park3/rakesh/Databases/metaclust/metaclust_nr.fasta - > yest\r\nFailed to open SSI index\r\n\r\nHow to resolve this ?"}}
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