{"push_id":2371942092,"size":34,"distinct_size":0,"ref":"refs/heads/master","head":"c40f3760f1024acb7548ec0bc8a6d0a4b907096f","before":"ebebbc94b2f74153262d5fe37305e3a2200e4d22","commits":[{"sha":"270392261e79d5411081ea8e437c2610609329a5","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Merge tag 'v2.2.0' into dev\n\nA pretty major improvment with no change to execution methods","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/270392261e79d5411081ea8e437c2610609329a5"},{"sha":"4b2973de1a96118bcce240d4ed69c3cf184f035e","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Merge tag 'v2.2.1' into dev\n\nFix for #49 and moved some messages in inherited cpp code to stderr","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/4b2973de1a96118bcce240d4ed69c3cf184f035e"},{"sha":"6e7f367dcce2f83befeca7cf45687314fa1d9dae","author":{"name":"David Jones","email":"a1c401733d1c2d6bd3fe9873dd9f26e70134808c@sanger.ac.uk"},"message":"Merge tag 'v2.2.2' into dev\n\nCorrection to sorting of VCF files","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/6e7f367dcce2f83befeca7cf45687314fa1d9dae"},{"sha":"91ea6fbc7c34bc9878aba471346f438c5991cd4c","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Merge tag 'v2.2.3' into dev\n\nFix to DI event collation in pindel core","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/91ea6fbc7c34bc9878aba471346f438c5991cd4c"},{"sha":"6e8bec14210af1fa2757caa809f4d9365211aaa0","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Merge tag 'v2.2.4' into dev\n\nFix record sorting and internal field content sorting","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/6e8bec14210af1fa2757caa809f4d9365211aaa0"},{"sha":"1d01a3012bfa1917423028164d039851843c9753","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Removed TG,VG tags from genotype fields.\nCleaned up code used to capture counts into object, ~3% faster.\nChecked values are same for ~44000 records following changes.","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/1d01a3012bfa1917423028164d039851843c9753"},{"sha":"29fd072cc9195428b3c7d3d52eb6ad680b642c56","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Update tests to remove TG,VG values","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/29fd072cc9195428b3c7d3d52eb6ad680b642c56"},{"sha":"6bcdbcb06f6409287fc0a127be2cafcc6384b81c","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Don't attempt to read anything for BWA version of DI as they never match, checked >4k DI events","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/6bcdbcb06f6409287fc0a127be2cafcc6384b81c"},{"sha":"524da4b54b2a08af985b1b30e1ec38f0b5052f6e","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Added Fragment based flagging, controlled by command line so no changes to results unless actively modified","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/524da4b54b2a08af985b1b30e1ec38f0b5052f6e"},{"sha":"9661784e1a1c29d4e6b2365e08a421a890f7ac95","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Handle change to flag rule names when finding germline","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/9661784e1a1c29d4e6b2365e08a421a890f7ac95"},{"sha":"18c483808c59ef6eda1ffbf0e211cddfd0c025f3","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Needed to use fragment based soft rules","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/18c483808c59ef6eda1ffbf0e211cddfd0c025f3"},{"sha":"4bab4670c84707787d85b521236d45514a334fdf","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Cleanup output due to coverage + perltidy oddity","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/4bab4670c84707787d85b521236d45514a334fdf"},{"sha":"01e717cfe31cdc314b4465115537d48a321f7e13","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Resolves #41","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/01e717cfe31cdc314b4465115537d48a321f7e13"},{"sha":"f55a6cbdc100ddef7993ce97ddaae6cac68bd115","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Cleanup some testing code and code doc","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/f55a6cbdc100ddef7993ce97ddaae6cac68bd115"},{"sha":"1d30b2e5a2741581e7f80f0738a9309efa0e6329","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Resolves #55, compress more intermediate files","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/1d30b2e5a2741581e7f80f0738a9309efa0e6329"},{"sha":"0aa9b502caec9f4e8163cb6b21a6876476f9c16b","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Resolves #31, minimise germline.bed by merging overlaps","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/0aa9b502caec9f4e8163cb6b21a6876476f9c16b"},{"sha":"626364bee441d9e185fa2c2819ab001d1f477ea4","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Fixes generation of germline when no filter defined.","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/626364bee441d9e185fa2c2819ab001d1f477ea4"},{"sha":"9c5cf83f6eb48a82d2d33b965550ee9e98611520","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Add fragment version of all rule sets","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/9c5cf83f6eb48a82d2d33b965550ee9e98611520"},{"sha":"4916ff52a3633b30ce9bb2a406385cd1bf60d7db","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Changes so post processing flow will accept and output new formats","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/4916ff52a3633b30ce9bb2a406385cd1bf60d7db"},{"sha":"fe3df4605be3bd0d7ffbc32845a45c3d5d8616d0","author":{"name":"Keiran Raine","email":"eee94dfd8aace1797e95cb742e11b2f1650b1c2f@sanger.ac.uk"},"message":"Doc changes, typo fix","distinct":false,"url":"https://api.github.com/repos/cancerit/cgpPindel/commits/fe3df4605be3bd0d7ffbc32845a45c3d5d8616d0"}]}
{"actor":{"display_login":"keiranmraine"}}