{"action":"created","issue":{"url":"https://api.github.com/repos/MRtrix3/mrtrix3/issues/1521","repository_url":"https://api.github.com/repos/MRtrix3/mrtrix3","labels_url":"https://api.github.com/repos/MRtrix3/mrtrix3/issues/1521/labels{/name}","comments_url":"https://api.github.com/repos/MRtrix3/mrtrix3/issues/1521/comments","events_url":"https://api.github.com/repos/MRtrix3/mrtrix3/issues/1521/events","html_url":"https://github.com/MRtrix3/mrtrix3/issues/1521","id":391523939,"node_id":"MDU6SXNzdWUzOTE1MjM5Mzk=","number":1521,"title":"Error build MRTRIX3 during installation on windows","user":{"login":"emat87","id":45925920,"node_id":"MDQ6VXNlcjQ1OTI1OTIw","avatar_url":"https://avatars1.githubusercontent.com/u/45925920?v=4","gravatar_id":"","url":"https://api.github.com/users/emat87","html_url":"https://github.com/emat87","followers_url":"https://api.github.com/users/emat87/followers","following_url":"https://api.github.com/users/emat87/following{/other_user}","gists_url":"https://api.github.com/users/emat87/gists{/gist_id}","starred_url":"https://api.github.com/users/emat87/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/emat87/subscriptions","organizations_url":"https://api.github.com/users/emat87/orgs","repos_url":"https://api.github.com/users/emat87/repos","events_url":"https://api.github.com/users/emat87/events{/privacy}","received_events_url":"https://api.github.com/users/emat87/received_events","type":"User","site_admin":false},"labels":[{"id":98087044,"node_id":"MDU6TGFiZWw5ODA4NzA0NA==","url":"https://api.github.com/repos/MRtrix3/mrtrix3/labels/build","name":"build","color":"fbca04","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":9,"created_at":"2018-12-17T00:50:04Z","updated_at":"2018-12-17T13:46:00Z","closed_at":null,"author_association":"NONE","body":"I have been trying to download MRTRIX3 on windows 10, everything is fine until I get to ./build, Usually around package 205, always regarding initialiser_helpers.o :\r\n\r\nERROR: (205/505) [CC] tmp/src/registration/transform/initialiser_helpers.o\r\n\r\nI've tried this on 2-3 different computers with the same error. \r\n\r\nHelp greatly appreciated!"},"comment":{"url":"https://api.github.com/repos/MRtrix3/mrtrix3/issues/comments/447850695","html_url":"https://github.com/MRtrix3/mrtrix3/issues/1521#issuecomment-447850695","issue_url":"https://api.github.com/repos/MRtrix3/mrtrix3/issues/1521","id":447850695,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0Nzg1MDY5NQ==","user":{"login":"emat87","id":45925920,"node_id":"MDQ6VXNlcjQ1OTI1OTIw","avatar_url":"https://avatars1.githubusercontent.com/u/45925920?v=4","gravatar_id":"","url":"https://api.github.com/users/emat87","html_url":"https://github.com/emat87","followers_url":"https://api.github.com/users/emat87/followers","following_url":"https://api.github.com/users/emat87/following{/other_user}","gists_url":"https://api.github.com/users/emat87/gists{/gist_id}","starred_url":"https://api.github.com/users/emat87/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/emat87/subscriptions","organizations_url":"https://api.github.com/users/emat87/orgs","repos_url":"https://api.github.com/users/emat87/repos","events_url":"https://api.github.com/users/emat87/events{/privacy}","received_events_url":"https://api.github.com/users/emat87/received_events","type":"User","site_admin":false},"created_at":"2018-12-17T13:46:00Z","updated_at":"2018-12-17T13:46:00Z","author_association":"NONE","body":"Apologies, I have repasted the correct build.log here:\r\n\r\nactive config is default\r\n\r\nreading configuration from \"config\"...\r\n\r\ngetting git version in folder \".\"... 3.0_RC3-135-g2b8e7d0c\r\n\r\ngetting git version in folder \".\"... 3.0_RC3-135-g2b8e7d0c\r\nversion file \"./core/version.cpp\" is out of date - updating\r\n\r\ngetting git version in folder \".\"... 3.0_RC3-135-g2b8e7d0c\r\nversion file \"./src/exec_version.cpp\" is out of date - updating\r\n\r\ncompiling TODO list...\r\nbuilding targets: bin/5tt2gmwmi.exe bin/5tt2vis.exe bin/5ttcheck.exe bin/5ttedit.exe bin/afdconnectivity.exe bin/amp2response.exe bin/amp2sh.exe bin/connectome2tck.exe bin/connectomestats.exe bin/dcmedit.exe bin/dcminfo.exe bin/dirflip.exe bin/dirgen.exe bin/dirmerge.exe bin/dirorder.exe bin/dirsplit.exe bin/dirstat.exe bin/dwi2adc.exe bin/dwi2fod.exe bin/dwi2mask.exe bin/dwi2tensor.exe bin/dwidenoise.exe bin/dwiextract.exe bin/dwinormalise.exe bin/fixel2sh.exe bin/fixel2tsf.exe bin/fixel2voxel.exe bin/fixelcfestats.exe bin/fixelconvert.exe bin/fixelcorrespondence.exe bin/fixelcrop.exe bin/fixelreorient.exe bin/fod2dec.exe bin/fod2fixel.exe bin/label2colour.exe bin/label2mesh.exe bin/labelconvert.exe bin/maskdump.exe bin/maskfilter.exe bin/mesh2voxel.exe bin/meshconvert.exe bin/meshfilter.exe bin/mraverageheader.exe bin/mrcalc.exe bin/mrcat.exe bin/mrcheckerboardmask.exe bin/mrclusterstats.exe bin/mrconvert.exe bin/mrcrop.exe bin/mrdegibbs.exe bin/mrdump.exe bin/mredit.exe bin/mrfilter.exe bin/mrhistmatch.exe bin/mrhistogram.exe bin/mrinfo.exe bin/mrmath.exe bin/mrmetric.exe bin/mrpad.exe bin/mrregister.exe bin/mrresize.exe bin/mrstats.exe bin/mrthreshold.exe bin/mrtransform.exe bin/mrview.exe bin/mtnormalise.exe bin/peaks2amp.exe bin/sh2amp.exe bin/sh2peaks.exe bin/sh2power.exe bin/sh2response.exe bin/shbasis.exe bin/shconv.exe bin/shview.exe bin/tck2connectome.exe bin/tck2fixel.exe bin/tckconvert.exe bin/tckdfc.exe bin/tckedit.exe bin/tckgen.exe bin/tckglobal.exe bin/tckinfo.exe bin/tckmap.exe bin/tckresample.exe bin/tcksample.exe bin/tcksift.exe bin/tcksift2.exe bin/tckstats.exe bin/tcktransform.exe bin/tensor2metric.exe bin/transformcalc.exe bin/transformcompose.exe bin/transformconvert.exe bin/tsfdivide.exe bin/tsfinfo.exe bin/tsfmult.exe bin/tsfsmooth.exe bin/tsfthreshold.exe bin/tsfvalidate.exe bin/vectorstats.exe bin/voxel2fixel.exe bin/voxel2mesh.exe bin/warp2metric.exe bin/warpconvert.exe bin/warpcorrect.exe bin/warpinit.exe bin/warpinvert.exe\r\nTODO list contains 505 items\r\n\r\n\r\n\r\n  launching 8 threads\r\n\r\n  (  1/505) [CC] tmp/cmd/5tt2gmwmi.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/5tt2gmwmi.cpp -o tmp/cmd/5tt2gmwmi.o\r\n(  2/505) [CC] tmp/src/dwi/tractography/rng.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/rng.cpp -o tmp/src/dwi/tractography/rng.o\r\n(  5/505) [CC] tmp/core/file/mmap.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/mmap.cpp -o tmp/core/file/mmap.o\r\n(  6/505) [CC] tmp/core/file/key_value.o\r\n(  3/505) [CC] tmp/src/dwi/tractography/roi.o\r\n(  4/505) [CC] tmp/core/file/nifti_utils.o\r\n(  7/505) [CC] tmp/core/stats.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/key_value.cpp -o tmp/core/file/key_value.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/roi.cpp -o tmp/src/dwi/tractography/roi.o\r\n(  8/505) [CC] tmp/core/bitset.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/nifti_utils.cpp -o tmp/core/file/nifti_utils.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/stats.cpp -o tmp/core/stats.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/bitset.cpp -o tmp/core/bitset.o\r\n(  9/505) [CC] tmp/core/file/dicom/study.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/study.cpp -o tmp/core/file/dicom/study.o\r\n( 10/505) [CC] tmp/core/formats/xds.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/xds.cpp -o tmp/core/formats/xds.o\r\n( 11/505) [CC] tmp/core/math/stats/glm.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/math/stats/glm.cpp -o tmp/core/math/stats/glm.o\r\n( 12/505) [CC] tmp/core/formats/mri.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/mri.cpp -o tmp/core/formats/mri.o\r\n( 13/505) [CC] tmp/core/header.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/header.cpp -o tmp/core/header.o\r\n( 14/505) [CC] tmp/core/file/nifti1_utils.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o\r\n( 15/505) [CC] tmp/core/file/ofstream.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/ofstream.cpp -o tmp/core/file/ofstream.o\r\n( 16/505) [CC] tmp/core/file/dicom/dict.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/dict.cpp -o tmp/core/file/dicom/dict.o\r\n( 17/505) [CC] tmp/core/file/dicom/quick_scan.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/quick_scan.cpp -o tmp/core/file/dicom/quick_scan.o\r\n( 18/505) [CC] tmp/core/mrtrix.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/mrtrix.cpp -o tmp/core/mrtrix.o\r\n( 19/505) [CC] tmp/core/file/json_utils.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/json_utils.cpp -o tmp/core/file/json_utils.o\r\n( 20/505) [CC] tmp/core/formats/mrtrix_utils.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/mrtrix_utils.cpp -o tmp/core/formats/mrtrix_utils.o\r\n( 21/505) [CC] tmp/core/datatype.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/datatype.cpp -o tmp/core/datatype.o\r\n( 22/505) [CC] tmp/core/image_io/sparse.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/sparse.cpp -o tmp/core/image_io/sparse.o\r\n( 23/505) [CC] tmp/core/progressbar.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/progressbar.cpp -o tmp/core/progressbar.o\r\n\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/nifti1_utils.cpp -o tmp/core/file/nifti1_utils.o:\r\n\r\ncore/file/nifti1_utils.cpp: In function 'void MR::File::NIfTI1::write(nifti_1_header&, const MR::Header&, bool)':\r\ncore/file/nifti1_utils.cpp:301:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 18 equals destination size [-Wstringop-truncation]\r\n         strncpy ( (char*) &NH.db_name, comments.size() ? comments[0].c_str() : \"untitled\\0\\0\\0\\0\\0\\0\\0\\0\\0\\0\\0\", 18);\r\n         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\r\n\r\n\r\n( 24/505) [CC] tmp/core/signal_handler.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/signal_handler.cpp -o tmp/core/signal_handler.o\r\n( 25/505) [CC] tmp/core/stride.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/stride.cpp -o tmp/core/stride.o\r\n( 26/505) [CC] tmp/core/file/name_parser.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/name_parser.cpp -o tmp/core/file/name_parser.o\r\n( 27/505) [CC] tmp/core/image_io/ram.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/ram.cpp -o tmp/core/image_io/ram.o\r\n( 28/505) [CC] tmp/core/math/average_space.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/math/average_space.cpp -o tmp/core/math/average_space.o\r\n( 29/505) [CC] tmp/core/formats/ram.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/ram.cpp -o tmp/core/formats/ram.o\r\n( 30/505) [CC] tmp/core/phase_encoding.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/phase_encoding.cpp -o tmp/core/phase_encoding.o\r\n( 31/505) [CC] tmp/core/file/dicom/element.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/element.cpp -o tmp/core/file/dicom/element.o\r\n( 32/505) [CC] tmp/core/math/stats/permutation.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/math/stats/permutation.cpp -o tmp/core/math/stats/permutation.o\r\n( 33/505) [CC] tmp/core/image_io/pipe.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/pipe.cpp -o tmp/core/image_io/pipe.o\r\n( 34/505) [CC] tmp/core/image_io/scratch.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/scratch.cpp -o tmp/core/image_io/scratch.o\r\n( 35/505) [CC] tmp/core/file/dicom/image.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/image.cpp -o tmp/core/file/dicom/image.o\r\n( 36/505) [CC] tmp/core/math/bessel.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/math/bessel.cpp -o tmp/core/math/bessel.o\r\n( 37/505) [CC] tmp/core/file/config.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/config.cpp -o tmp/core/file/config.o\r\n( 38/505) [CC] tmp/core/file/dicom/series.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/series.cpp -o tmp/core/file/dicom/series.o\r\n( 39/505) [CC] tmp/core/formats/nifti2.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/nifti2.cpp -o tmp/core/formats/nifti2.o\r\n( 40/505) [CC] tmp/core/formats/nifti1_gz.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/nifti1_gz.cpp -o tmp/core/formats/nifti1_gz.o\r\n( 41/505) [CC] tmp/core/file/dicom/mapper.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/mapper.cpp -o tmp/core/file/dicom/mapper.o\r\n( 42/505) [CC] tmp/core/app.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/app.cpp -o tmp/core/app.o\r\n( 43/505) [CC] tmp/core/file/nifti2_utils.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/nifti2_utils.cpp -o tmp/core/file/nifti2_utils.o\r\n( 44/505) [CC] tmp/core/algo/histogram.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/algo/histogram.cpp -o tmp/core/algo/histogram.o\r\n( 45/505) [CC] tmp/core/file/dicom/patient.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/patient.cpp -o tmp/core/file/dicom/patient.o\r\n( 46/505) [CC] tmp/core/formats/tiff.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/tiff.cpp -o tmp/core/formats/tiff.o\r\n( 47/505) [CC] tmp/core/exception.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/exception.cpp -o tmp/core/exception.o\r\n( 48/505) [CC] tmp/core/formats/nifti1.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/nifti1.cpp -o tmp/core/formats/nifti1.o\r\n( 49/505) [CC] tmp/core/formats/list.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/list.cpp -o tmp/core/formats/list.o\r\n( 50/505) [CC] tmp/core/axes.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/axes.cpp -o tmp/core/axes.o\r\n( 51/505) [CC] tmp/core/formats/dicom.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/dicom.cpp -o tmp/core/formats/dicom.o\r\n( 52/505) [CC] tmp/core/adapter/reslice.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/adapter/reslice.cpp -o tmp/core/adapter/reslice.o\r\n( 53/505) [CC] tmp/core/file/dicom/select_cmdline.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/select_cmdline.cpp -o tmp/core/file/dicom/select_cmdline.o\r\n( 54/505) [CC] tmp/core/formats/mgh.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/mgh.cpp -o tmp/core/formats/mgh.o\r\n( 55/505) [CC] tmp/core/image_io/default.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/default.cpp -o tmp/core/image_io/default.o\r\n( 56/505) [CC] tmp/core/formats/mrtrix_gz.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/mrtrix_gz.cpp -o tmp/core/formats/mrtrix_gz.o\r\n( 57/505) [CC] tmp/core/formats/mrtrix_sparse_legacy.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/mrtrix_sparse_legacy.cpp -o tmp/core/formats/mrtrix_sparse_legacy.o\r\n( 58/505) [CC] tmp/core/file/tiff.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/tiff.cpp -o tmp/core/file/tiff.o\r\n( 59/505) [CC] tmp/core/formats/pipe.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/pipe.cpp -o tmp/core/formats/pipe.o\r\n( 60/505) [CC] tmp/core/thread.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/thread.cpp -o tmp/core/thread.o\r\n( 61/505) [CC] tmp/core/image_io/base.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/base.cpp -o tmp/core/image_io/base.o\r\n( 62/505) [CC] tmp/core/file/mgh.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/mgh.cpp -o tmp/core/file/mgh.o\r\n( 63/505) [CC] tmp/core/formats/mgz.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/mgz.cpp -o tmp/core/formats/mgz.o\r\n( 64/505) [CC] tmp/core/math/SH.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/math/SH.cpp -o tmp/core/math/SH.o\r\n( 65/505) [CC] tmp/core/version.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/version.cpp -o tmp/core/version.o\r\n( 66/505) [CC] tmp/core/formats/nifti2_gz.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/formats/nifti2_gz.cpp -o tmp/core/formats/nifti2_gz.o\r\n( 67/505) [CC] tmp/core/image_io/fetch_store.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/fetch_store.cpp -o tmp/core/image_io/fetch_store.o\r\n( 68/505) [CC] tmp/core/image_io/gz.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/gz.cpp -o tmp/core/image_io/gz.o\r\n( 69/505) [CC] tmp/core/image_io/mosaic.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 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tmp/core/formats/analyse.o\r\n( 72/505) [CC] tmp/core/file/dicom/tree.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/file/dicom/tree.cpp -o tmp/core/file/dicom/tree.o\r\n( 73/505) [CC] tmp/core/image_io/tiff.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE core/image_io/tiff.cpp -o tmp/core/image_io/tiff.o\r\n( 74/505) [CC] tmp/src/dwi/tractography/properties.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/properties.cpp -o tmp/src/dwi/tractography/properties.o\r\n( 75/505) [CC] tmp/src/dwi/tractography/seeding/list.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/seeding/list.cpp -o tmp/src/dwi/tractography/seeding/list.o\r\n( 76/505) [CC] tmp/src/exec_version.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/exec_version.cpp -o tmp/src/exec_version.o\r\n( 77/505) [CC] tmp/src/dwi/tractography/ACT/act.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/ACT/act.cpp -o tmp/src/dwi/tractography/ACT/act.o\r\n( 78/505) [CC] tmp/cmd/5tt2vis.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/5tt2vis.cpp -o tmp/cmd/5tt2vis.o\r\n( 79/505) [CC] tmp/cmd/5ttcheck.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/5ttcheck.cpp -o tmp/cmd/5ttcheck.o\r\n( 80/505) [CC] tmp/cmd/5ttedit.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/5ttedit.cpp -o tmp/cmd/5ttedit.o\r\n( 81/505) [CC] tmp/src/dwi/tractography/resampling/downsampler.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/downsampler.cpp -o tmp/src/dwi/tractography/resampling/downsampler.o\r\n( 82/505) [CC] tmp/src/dwi/tractography/mapping/mapper.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/mapper.cpp -o tmp/src/dwi/tractography/mapping/mapper.o\r\n( 83/505) [CC] tmp/src/dwi/directions/set.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/directions/set.cpp -o tmp/src/dwi/directions/set.o\r\n( 84/505) [CC] tmp/src/dwi/tractography/mapping/fixel_td_map.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/fixel_td_map.cpp -o tmp/src/dwi/tractography/mapping/fixel_td_map.o\r\n( 85/505) [CC] tmp/src/dwi/tractography/resampling/endpoints.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/endpoints.cpp -o tmp/src/dwi/tractography/resampling/endpoints.o\r\n( 86/505) [CC] tmp/src/dwi/tractography/resampling/fixed_step_size.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/fixed_step_size.cpp -o tmp/src/dwi/tractography/resampling/fixed_step_size.o\r\n( 87/505) [CC] tmp/src/dwi/tractography/mapping/mapper_plugins.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/mapper_plugins.cpp -o tmp/src/dwi/tractography/mapping/mapper_plugins.o\r\n( 88/505) [CC] tmp/cmd/afdconnectivity.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/afdconnectivity.cpp -o tmp/cmd/afdconnectivity.o\r\n( 89/505) [CC] tmp/src/dwi/tractography/mapping/mapping.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/mapping.cpp -o tmp/src/dwi/tractography/mapping/mapping.o\r\n( 90/505) [CC] tmp/src/dwi/fmls.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/fmls.cpp -o tmp/src/dwi/fmls.o\r\n( 91/505) [CC] tmp/src/dwi/directions/mask.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/directions/mask.cpp -o tmp/src/dwi/directions/mask.o\r\n( 92/505) [CC] tmp/src/dwi/tractography/resampling/upsampler.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/upsampler.cpp -o tmp/src/dwi/tractography/resampling/upsampler.o\r\n( 93/505) [CC] tmp/src/dwi/tractography/mapping/twi_stats.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/twi_stats.cpp -o tmp/src/dwi/tractography/mapping/twi_stats.o\r\n( 94/505) [CC] tmp/src/dwi/tractography/resampling/arc.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/arc.cpp -o tmp/src/dwi/tractography/resampling/arc.o\r\n( 95/505) [CC] tmp/src/dwi/directions/predefined.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/directions/predefined.cpp -o tmp/src/dwi/directions/predefined.o\r\n( 96/505) [CC] tmp/src/dwi/tractography/resampling/fixed_num_points.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/fixed_num_points.cpp -o tmp/src/dwi/tractography/resampling/fixed_num_points.o\r\n( 97/505) [CC] tmp/src/dwi/tractography/resampling/resampling.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/resampling/resampling.cpp -o tmp/src/dwi/tractography/resampling/resampling.o\r\n( 98/505) [CC] tmp/src/dwi/tractography/mapping/voxel.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/voxel.cpp -o tmp/src/dwi/tractography/mapping/voxel.o\r\n( 99/505) [CC] tmp/src/dwi/tractography/SIFT/proc_mask.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/SIFT/proc_mask.cpp -o tmp/src/dwi/tractography/SIFT/proc_mask.o\r\n(100/505) [CC] tmp/src/dwi/tractography/file_base.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/file_base.cpp -o tmp/src/dwi/tractography/file_base.o\r\n(101/505) [CC] tmp/src/dwi/shells.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/shells.cpp -o tmp/src/dwi/shells.o\r\n(102/505) [CC] tmp/cmd/amp2response.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/amp2response.cpp -o tmp/cmd/amp2response.o\r\n(103/505) [CC] tmp/src/dwi/gradient.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/gradient.cpp -o tmp/src/dwi/gradient.o\r\n(104/505) [CC] tmp/cmd/amp2sh.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/amp2sh.cpp -o tmp/cmd/amp2sh.o\r\n(105/505) [CC] tmp/cmd/connectome2tck.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/connectome2tck.cpp -o tmp/cmd/connectome2tck.o\r\n(106/505) [CC] tmp/src/connectome/connectome.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/connectome/connectome.cpp -o tmp/src/connectome/connectome.o\r\n(107/505) [CC] tmp/src/dwi/tractography/connectome/connectome.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/connectome/connectome.cpp -o tmp/src/dwi/tractography/connectome/connectome.o\r\n(108/505) [CC] tmp/src/dwi/tractography/connectome/exemplar.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/connectome/exemplar.cpp -o tmp/src/dwi/tractography/connectome/exemplar.o\r\n(109/505) [CC] tmp/src/dwi/tractography/connectome/extract.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/connectome/extract.cpp -o tmp/src/dwi/tractography/connectome/extract.o\r\n(110/505) [CC] tmp/src/dwi/tractography/connectome/tck2nodes.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/connectome/tck2nodes.cpp -o tmp/src/dwi/tractography/connectome/tck2nodes.o\r\n(111/505) [CC] tmp/src/dwi/tractography/weights.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/weights.cpp -o tmp/src/dwi/tractography/weights.o\r\n(112/505) [CC] tmp/src/stats/permstack.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/stats/permstack.cpp -o tmp/src/stats/permstack.o\r\n(113/505) [CC] tmp/src/stats/tfce.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/stats/tfce.cpp -o tmp/src/stats/tfce.o\r\n(114/505) [CC] tmp/src/connectome/enhance.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/connectome/enhance.cpp -o tmp/src/connectome/enhance.o\r\n(115/505) [CC] tmp/src/stats/permtest.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/stats/permtest.cpp -o tmp/src/stats/permtest.o\r\n(116/505) [LD] bin/mrtrix.dll\r\ng++ tmp/core/file/nifti_utils.o tmp/core/file/mmap.o tmp/core/file/key_value.o tmp/core/stats.o tmp/core/bitset.o tmp/core/file/dicom/study.o tmp/core/formats/xds.o tmp/core/math/stats/glm.o tmp/core/formats/mri.o tmp/core/header.o tmp/core/file/nifti1_utils.o tmp/core/file/ofstream.o tmp/core/file/dicom/dict.o tmp/core/file/dicom/quick_scan.o tmp/core/mrtrix.o tmp/core/file/json_utils.o tmp/core/formats/mrtrix_utils.o tmp/core/datatype.o tmp/core/image_io/sparse.o tmp/core/progressbar.o tmp/core/signal_handler.o tmp/core/stride.o tmp/core/file/name_parser.o tmp/core/image_io/ram.o tmp/core/math/average_space.o tmp/core/formats/ram.o tmp/core/phase_encoding.o tmp/core/file/dicom/element.o tmp/core/math/stats/permutation.o tmp/core/image_io/pipe.o tmp/core/image_io/scratch.o tmp/core/file/dicom/image.o tmp/core/math/bessel.o tmp/core/file/config.o tmp/core/file/dicom/series.o tmp/core/formats/nifti2.o tmp/core/formats/nifti1_gz.o tmp/core/file/dicom/mapper.o tmp/core/app.o tmp/core/file/nifti2_utils.o tmp/core/algo/histogram.o tmp/core/file/dicom/patient.o tmp/core/formats/tiff.o tmp/core/exception.o tmp/core/formats/nifti1.o tmp/core/formats/list.o tmp/core/axes.o tmp/core/formats/dicom.o tmp/core/adapter/reslice.o tmp/core/file/dicom/select_cmdline.o tmp/core/formats/mgh.o tmp/core/image_io/default.o tmp/core/formats/mrtrix_gz.o tmp/core/formats/mrtrix_sparse_legacy.o tmp/core/file/tiff.o tmp/core/formats/pipe.o tmp/core/thread.o tmp/core/image_io/base.o tmp/core/file/mgh.o tmp/core/formats/mgz.o tmp/core/math/SH.o tmp/core/version.o tmp/core/formats/nifti2_gz.o tmp/core/image_io/fetch_store.o tmp/core/image_io/gz.o tmp/core/image_io/mosaic.o tmp/core/formats/mrtrix.o tmp/core/formats/analyse.o tmp/core/file/dicom/tree.o tmp/core/image_io/tiff.o -shared -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -o bin/mrtrix.dll\r\n(117/505) [CC] tmp/cmd/connectomestats.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/connectomestats.cpp -o tmp/cmd/connectomestats.o\r\n(118/505) [CC] tmp/cmd/dcmedit.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dcmedit.cpp -o tmp/cmd/dcmedit.o\r\n(119/505) [CC] tmp/cmd/dcminfo.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dcminfo.cpp -o tmp/cmd/dcminfo.o\r\n(120/505) [LB] bin/5tt2gmwmi.exe\r\ng++ tmp/cmd/5tt2gmwmi.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/5tt2gmwmi.exe\r\n(121/505) [LB] bin/5tt2vis.exe\r\ng++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/ACT/act.o tmp/cmd/5tt2vis.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/5tt2vis.exe\r\n(122/505) [LB] bin/5ttcheck.exe\r\ng++ tmp/cmd/5ttcheck.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/5ttcheck.exe\r\n(123/505) [LB] bin/5ttedit.exe\r\ng++ tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/exec_version.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/cmd/5ttedit.o tmp/src/dwi/tractography/ACT/act.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/5ttedit.exe\r\n(124/505) [LB] bin/afdconnectivity.exe\r\ng++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/mapping/fixel_td_map.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/cmd/afdconnectivity.o tmp/src/dwi/tractography/ACT/act.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/fmls.o tmp/src/dwi/directions/mask.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/SIFT/proc_mask.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/afdconnectivity.exe\r\n(125/505) [CC] tmp/cmd/dirflip.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dirflip.cpp -o tmp/cmd/dirflip.o\r\n(126/505) [CC] tmp/src/dwi/directions/file.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/directions/file.cpp -o tmp/src/dwi/directions/file.o\r\n(127/505) [LB] bin/connectome2tck.exe\r\ng++ tmp/src/dwi/tractography/rng.o tmp/cmd/connectome2tck.o tmp/src/dwi/tractography/properties.o tmp/src/connectome/connectome.o tmp/src/dwi/tractography/connectome/connectome.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/connectome/exemplar.o tmp/src/dwi/tractography/connectome/extract.o tmp/src/dwi/tractography/connectome/tck2nodes.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/weights.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/connectome2tck.exe\r\n(128/505) [CC] tmp/cmd/dirgen.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dirgen.cpp -o tmp/cmd/dirgen.o\r\n(129/505) [LB] bin/dcminfo.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/dcminfo.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dcminfo.exe\r\n(130/505) [LB] bin/dcmedit.exe\r\ng++ tmp/cmd/dcmedit.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dcmedit.exe\r\n(131/505) [CC] tmp/cmd/dirmerge.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dirmerge.cpp -o tmp/cmd/dirmerge.o\r\n(132/505) [CC] tmp/cmd/dirorder.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dirorder.cpp -o tmp/cmd/dirorder.o\r\n(133/505) [CC] tmp/cmd/dirsplit.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dirsplit.cpp -o tmp/cmd/dirsplit.o\r\n(134/505) [LB] bin/dirflip.exe\r\ng++ tmp/cmd/dirflip.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dirflip.exe\r\n(135/505) [CC] tmp/cmd/dirstat.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dirstat.cpp -o tmp/cmd/dirstat.o\r\n(136/505) [LB] bin/amp2response.exe\r\ng++ tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/cmd/amp2response.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/amp2response.exe\r\n(137/505) [LB] bin/dirorder.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/dirorder.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dirorder.exe\r\n(138/505) [CC] tmp/cmd/dwi2adc.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwi2adc.cpp -o tmp/cmd/dwi2adc.o\r\n(139/505) [CC] tmp/cmd/dwi2fod.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwi2fod.cpp -o tmp/cmd/dwi2fod.o\r\n(140/505) [LB] bin/dirmerge.exe\r\ng++ tmp/cmd/dirmerge.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dirmerge.exe\r\n(141/505) [LB] bin/connectomestats.exe\r\ng++ tmp/src/stats/permstack.o tmp/src/stats/tfce.o tmp/src/connectome/connectome.o tmp/src/connectome/enhance.o tmp/src/stats/permtest.o tmp/cmd/connectomestats.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/connectomestats.exe\r\n(142/505) [CC] tmp/src/dwi/sdeconv/csd.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/sdeconv/csd.cpp -o tmp/src/dwi/sdeconv/csd.o\r\n(143/505) [CC] tmp/cmd/dwi2mask.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwi2mask.cpp -o tmp/cmd/dwi2mask.o\r\n(144/505) [LB] bin/amp2sh.exe\r\ng++ tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/amp2sh.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/amp2sh.exe\r\n(145/505) [LB] bin/dirgen.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/dirgen.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dirgen.exe\r\n(146/505) [CC] tmp/cmd/dwi2tensor.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwi2tensor.cpp -o tmp/cmd/dwi2tensor.o\r\n(147/505) [CC] tmp/cmd/dwidenoise.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwidenoise.cpp -o tmp/cmd/dwidenoise.o\r\n(148/505) [LB] bin/dirsplit.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/dirsplit.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dirsplit.exe\r\n(149/505) [CC] tmp/cmd/dwiextract.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwiextract.cpp -o tmp/cmd/dwiextract.o\r\n(150/505) [CC] tmp/cmd/dwinormalise.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/dwinormalise.cpp -o tmp/cmd/dwinormalise.o\r\n(151/505) [LB] bin/dirstat.exe\r\ng++ tmp/cmd/dirstat.o tmp/src/dwi/shells.o tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/src/dwi/directions/file.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dirstat.exe\r\n(152/505) [CC] tmp/cmd/fixel2sh.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixel2sh.cpp -o tmp/cmd/fixel2sh.o\r\n(153/505) [LB] bin/dwiextract.exe\r\ng++ tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/cmd/dwiextract.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwiextract.exe\r\n(154/505) [LB] bin/dwi2adc.exe\r\ng++ tmp/cmd/dwi2adc.o tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwi2adc.exe\r\n(155/505) [CC] tmp/cmd/fixel2tsf.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixel2tsf.cpp -o tmp/cmd/fixel2tsf.o\r\n(156/505) [CC] tmp/cmd/fixel2voxel.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixel2voxel.cpp -o tmp/cmd/fixel2voxel.o\r\n(157/505) [LB] bin/dwidenoise.exe\r\ng++ tmp/cmd/dwidenoise.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwidenoise.exe\r\n(158/505) [CC] tmp/src/dwi/tractography/mapping/writer.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/dwi/tractography/mapping/writer.cpp -o tmp/src/dwi/tractography/mapping/writer.o\r\n(159/505) [LB] bin/dwi2tensor.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/dwi2tensor.o tmp/src/dwi/shells.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwi2tensor.exe\r\n(160/505) [CC] tmp/cmd/fixelcfestats.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixelcfestats.cpp -o tmp/cmd/fixelcfestats.o\r\n(161/505) [CC] tmp/src/stats/cfe.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/stats/cfe.cpp -o tmp/src/stats/cfe.o\r\n(162/505) [LB] bin/dwinormalise.exe\r\ng++ tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/cmd/dwinormalise.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwinormalise.exe\r\n(163/505) [CC] tmp/cmd/fixelconvert.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixelconvert.cpp -o tmp/cmd/fixelconvert.o\r\n(164/505) [LB] bin/fixel2sh.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/fixel2sh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixel2sh.exe\r\n(165/505) [CC] tmp/cmd/fixelcorrespondence.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixelcorrespondence.cpp -o tmp/cmd/fixelcorrespondence.o\r\n(166/505) [LB] bin/dwi2mask.exe\r\ng++ tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/cmd/dwi2mask.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwi2mask.exe\r\n(167/505) [CC] tmp/cmd/fixelcrop.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixelcrop.cpp -o tmp/cmd/fixelcrop.o\r\n(168/505) [LB] bin/dwi2fod.exe\r\ng++ tmp/src/dwi/shells.o tmp/cmd/dwi2fod.o tmp/src/dwi/sdeconv/csd.o tmp/src/dwi/gradient.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/dwi2fod.exe\r\n(169/505) [CC] tmp/cmd/fixelreorient.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fixelreorient.cpp -o tmp/cmd/fixelreorient.o\r\n(170/505) [CC] tmp/cmd/fod2dec.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fod2dec.cpp -o tmp/cmd/fod2dec.o\r\n(171/505) [LB] bin/fixel2tsf.exe\r\ng++ tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/voxel.o tmp/cmd/fixel2tsf.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixel2tsf.exe\r\n(172/505) [CC] tmp/cmd/fod2fixel.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/fod2fixel.cpp -o tmp/cmd/fod2fixel.o\r\n(173/505) [LB] bin/fixelconvert.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/fixelconvert.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixelconvert.exe\r\n(174/505) [CC] tmp/cmd/label2colour.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/label2colour.cpp -o tmp/cmd/label2colour.o\r\n(175/505) [LB] bin/fixelcorrespondence.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/fixelcorrespondence.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixelcorrespondence.exe\r\n(176/505) [LB] bin/fixelcrop.exe\r\ng++ tmp/cmd/fixelcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixelcrop.exe\r\n(177/505) [CC] tmp/src/connectome/lut.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/connectome/lut.cpp -o tmp/src/connectome/lut.o\r\n(178/505) [CC] tmp/src/surface/mesh_multi.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/mesh_multi.cpp -o tmp/src/surface/mesh_multi.o\r\n(179/505) [LB] bin/fixel2voxel.exe\r\ng++ tmp/cmd/fixel2voxel.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/tractography/seeding/list.o tmp/src/exec_version.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixel2voxel.exe\r\n(180/505) [CC] tmp/src/surface/mesh.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/mesh.cpp -o tmp/src/surface/mesh.o\r\n(181/505) [CC] tmp/src/surface/freesurfer.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/freesurfer.cpp -o tmp/src/surface/freesurfer.o\r\n(182/505) [LB] bin/fixelreorient.exe\r\ng++ tmp/cmd/fixelreorient.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixelreorient.exe\r\n(183/505) [CC] tmp/src/surface/polygon.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/polygon.cpp -o tmp/src/surface/polygon.o\r\n(184/505) [CC] tmp/src/surface/scalar.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/scalar.cpp -o tmp/src/surface/scalar.o\r\n(185/505) [LB] bin/fod2fixel.exe\r\ng++ tmp/cmd/fod2fixel.o tmp/src/dwi/directions/set.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o tmp/src/dwi/fmls.o tmp/src/dwi/directions/mask.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fod2fixel.exe\r\n(186/505) [CC] tmp/cmd/label2mesh.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/label2mesh.cpp -o tmp/cmd/label2mesh.o\r\n(187/505) [CC] tmp/cmd/labelconvert.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/labelconvert.cpp -o tmp/cmd/labelconvert.o\r\n(188/505) [LB] bin/label2colour.exe\r\ng++ tmp/cmd/label2colour.o tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/label2colour.exe\r\n(189/505) [LB] bin/fod2dec.exe\r\ng++ tmp/src/dwi/directions/predefined.o tmp/cmd/fod2dec.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fod2dec.exe\r\n(190/505) [CC] tmp/cmd/maskdump.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/maskdump.cpp -o tmp/cmd/maskdump.o\r\n\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/mesh.cpp -o tmp/src/surface/mesh.o:\r\n\r\nsrc/surface/mesh.cpp: In member function 'void MR::Surface::Mesh::save_stl(const string&, bool) const':\r\nsrc/surface/mesh.cpp:660:17: warning: 'char* strncpy(char*, const char*, size_t)' specified bound 80 equals destination size [-Wstringop-truncation]\r\n         strncpy (header, string.c_str(), 80);\r\n         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~\r\n\r\n\r\n(191/505) [CC] tmp/cmd/maskfilter.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/maskfilter.cpp -o tmp/cmd/maskfilter.o\r\n(192/505) [CC] tmp/cmd/mesh2voxel.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mesh2voxel.cpp -o tmp/cmd/mesh2voxel.o\r\n(193/505) [CC] tmp/src/surface/filter/vertex_transform.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/filter/vertex_transform.cpp -o tmp/src/surface/filter/vertex_transform.o\r\n(194/505) [CC] tmp/src/surface/algo/mesh2image.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/algo/mesh2image.cpp -o tmp/src/surface/algo/mesh2image.o\r\n(195/505) [LB] bin/fixelcfestats.exe\r\ng++ tmp/src/stats/permstack.o tmp/src/dwi/tractography/resampling/downsampler.o tmp/src/dwi/tractography/rng.o tmp/src/dwi/tractography/mapping/mapper.o tmp/src/dwi/tractography/properties.o tmp/src/dwi/directions/set.o tmp/src/dwi/tractography/resampling/endpoints.o tmp/src/dwi/tractography/roi.o tmp/src/dwi/tractography/mapping/writer.o tmp/src/dwi/tractography/resampling/fixed_step_size.o tmp/src/dwi/tractography/seeding/list.o tmp/src/dwi/tractography/resampling/arc.o tmp/src/dwi/tractography/mapping/mapper_plugins.o tmp/src/exec_version.o tmp/src/dwi/tractography/mapping/mapping.o tmp/src/dwi/tractography/resampling/upsampler.o tmp/cmd/fixelcfestats.o tmp/src/stats/cfe.o tmp/src/dwi/tractography/mapping/twi_stats.o tmp/src/stats/permtest.o tmp/src/dwi/directions/predefined.o tmp/src/dwi/tractography/resampling/fixed_num_points.o tmp/src/dwi/tractography/resampling/resampling.o tmp/src/dwi/tractography/mapping/voxel.o tmp/src/dwi/tractography/file_base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/fixelcfestats.exe\r\n(196/505) [CC] tmp/src/surface/filter/base.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/filter/base.cpp -o tmp/src/surface/filter/base.o\r\n(197/505) [CC] tmp/cmd/meshconvert.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/meshconvert.cpp -o tmp/cmd/meshconvert.o\r\n(198/505) [CC] tmp/cmd/meshfilter.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/meshfilter.cpp -o tmp/cmd/meshfilter.o\r\n(199/505) [LB] bin/maskdump.exe\r\ng++ tmp/cmd/maskdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/maskdump.exe\r\n(200/505) [LB] bin/labelconvert.exe\r\ng++ tmp/src/connectome/lut.o tmp/src/connectome/connectome.o tmp/cmd/labelconvert.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/labelconvert.exe\r\n(201/505) [CC] tmp/src/surface/filter/smooth.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/surface/filter/smooth.cpp -o tmp/src/surface/filter/smooth.o\r\n(202/505) [CC] tmp/cmd/mraverageheader.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mraverageheader.cpp -o tmp/cmd/mraverageheader.o\r\n(203/505) [CC] tmp/src/registration/transform/initialiser.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser.cpp -o tmp/src/registration/transform/initialiser.o\r\n(204/505) [LB] bin/label2mesh.exe\r\ng++ tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/polygon.o tmp/src/surface/scalar.o tmp/cmd/label2mesh.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/label2mesh.exe\r\n(205/505) [CC] tmp/src/registration/transform/initialiser_helpers.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o\r\n(206/505) [CC] tmp/src/registration/transform/convergence_check.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/transform/convergence_check.cpp -o tmp/src/registration/transform/convergence_check.o\r\n(207/505) [LB] bin/mesh2voxel.exe\r\ng++ tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/cmd/mesh2voxel.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/polygon.o tmp/src/surface/algo/mesh2image.o tmp/src/surface/scalar.o tmp/src/surface/filter/base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mesh2voxel.exe\r\n(208/505) [CC] tmp/src/registration/transform/rigid.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/transform/rigid.cpp -o tmp/src/registration/transform/rigid.o\r\n(209/505) [LB] bin/meshconvert.exe\r\ng++ tmp/src/exec_version.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/filter/vertex_transform.o tmp/src/surface/polygon.o tmp/cmd/meshconvert.o tmp/src/surface/filter/base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/meshconvert.exe\r\n(211/505) [LB] bin/meshfilter.exe\r\n(210/505) [CC] tmp/cmd/mrcalc.o\r\ng++ tmp/cmd/meshfilter.o tmp/src/surface/filter/smooth.o tmp/src/connectome/connectome.o tmp/src/connectome/lut.o tmp/src/surface/scalar.o tmp/src/surface/mesh_multi.o tmp/src/surface/mesh.o tmp/src/surface/freesurfer.o tmp/src/surface/polygon.o tmp/src/exec_version.o tmp/src/surface/filter/base.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/meshfilter.exe\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrcalc.cpp -o tmp/cmd/mrcalc.o\r\n(212/505) [CC] tmp/cmd/mrcat.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrcat.cpp -o tmp/cmd/mrcat.o\r\n(213/505) [CC] tmp/cmd/mrcheckerboardmask.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrcheckerboardmask.cpp -o tmp/cmd/mrcheckerboardmask.o\r\n(214/505) [LB] bin/maskfilter.exe\r\ng++ tmp/cmd/maskfilter.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/maskfilter.exe\r\n(215/505) [CC] tmp/cmd/mrclusterstats.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrclusterstats.cpp -o tmp/cmd/mrclusterstats.o\r\n(216/505) [LB] bin/mrcheckerboardmask.exe\r\ng++ tmp/cmd/mrcheckerboardmask.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrcheckerboardmask.exe\r\n(217/505) [CC] tmp/src/stats/cluster.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/stats/cluster.cpp -o tmp/src/stats/cluster.o\r\n(218/505) [CC] tmp/cmd/mrconvert.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrconvert.cpp -o tmp/cmd/mrconvert.o\r\n(219/505) [LB] bin/mrclusterstats.exe\r\ng++ tmp/src/stats/permstack.o tmp/src/stats/tfce.o tmp/cmd/mrclusterstats.o tmp/src/stats/permtest.o tmp/src/dwi/directions/predefined.o tmp/src/exec_version.o tmp/src/stats/cluster.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrclusterstats.exe\r\n(220/505) [LB] bin/mrcalc.exe\r\ng++ tmp/src/dwi/gradient.o tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/cmd/mrcalc.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrcalc.exe\r\n(221/505) [CC] tmp/cmd/mrcrop.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrcrop.cpp -o tmp/cmd/mrcrop.o\r\n(222/505) [CC] tmp/cmd/mrdegibbs.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrdegibbs.cpp -o tmp/cmd/mrdegibbs.o\r\n(223/505) [LB] bin/mrcat.exe\r\ng++ tmp/src/exec_version.o tmp/src/dwi/shells.o tmp/cmd/mrcat.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrcat.exe\r\n(224/505) [LB] bin/mrcrop.exe\r\ng++ tmp/cmd/mrcrop.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrcrop.exe\r\n(225/505) [CC] tmp/cmd/mrdump.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrdump.cpp -o tmp/cmd/mrdump.o\r\n(226/505) [CC] tmp/cmd/mredit.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mredit.cpp -o tmp/cmd/mredit.o\r\n(227/505) [CC] tmp/cmd/mrfilter.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrfilter.cpp -o tmp/cmd/mrfilter.o\r\n(228/505) [LB] bin/mrdegibbs.exe\r\ng++ tmp/cmd/mrdegibbs.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrdegibbs.exe\r\n(229/505) [CC] tmp/cmd/mrhistmatch.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrhistmatch.cpp -o tmp/cmd/mrhistmatch.o\r\n(230/505) [LB] bin/mredit.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/mredit.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mredit.exe\r\n(231/505) [CC] tmp/cmd/mrhistogram.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrhistogram.cpp -o tmp/cmd/mrhistogram.o\r\n(232/505) [LB] bin/mrhistmatch.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/mrhistmatch.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrhistmatch.exe\r\n(233/505) [CC] tmp/cmd/mrinfo.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrinfo.cpp -o tmp/cmd/mrinfo.o\r\n(234/505) [CC] tmp/cmd/mrmath.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrmath.cpp -o tmp/cmd/mrmath.o\r\n(235/505) [LB] bin/mrhistogram.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/mrhistogram.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrhistogram.exe\r\n(236/505) [CC] tmp/cmd/mrmetric.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrmetric.cpp -o tmp/cmd/mrmetric.o\r\n(237/505) [LB] bin/mrdump.exe\r\ng++ tmp/cmd/mrdump.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrdump.exe\r\n(238/505) [CC] tmp/cmd/mrpad.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrpad.cpp -o tmp/cmd/mrpad.o\r\n(239/505) [LB] bin/mrfilter.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/mrfilter.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrfilter.exe\r\n(240/505) [CC] tmp/cmd/mrregister.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE cmd/mrregister.cpp -o tmp/cmd/mrregister.o\r\n(241/505) [LB] bin/mrpad.exe\r\ng++ tmp/cmd/mrpad.o tmp/src/exec_version.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrpad.exe\r\n(242/505) [LB] bin/mrinfo.exe\r\ng++ tmp/src/exec_version.o tmp/cmd/mrinfo.o tmp/src/dwi/shells.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrinfo.exe\r\n(243/505) [CC] tmp/src/registration/nonlinear.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/nonlinear.cpp -o tmp/src/registration/nonlinear.o\r\n(244/505) [CC] tmp/src/registration/transform/affine.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/transform/affine.cpp -o tmp/src/registration/transform/affine.o\r\n(245/505) [LB] bin/mrconvert.exe\r\ng++ tmp/src/dwi/shells.o tmp/src/exec_version.o tmp/cmd/mrconvert.o tmp/src/dwi/gradient.o -lmrtrix -Wl,--sort-common,--as-needed -pthread -Wl,--allow-multiple-definition -L/mingw64/lib -lz -L/mingw64/lib -ltiff -lzstd -llzma -ljpeg -lz -L/mingw64/lib -lfftw3 -lm -L./bin -o bin/mrconvert.exe\r\n(246/505) [CC] tmp/src/registration/linear.o\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/linear.cpp -o tmp/src/registration/linear.o\r\nERROR: (205/505) [CC] tmp/src/registration/transform/initialiser_helpers.o\r\n\r\nERROR: (205/505) [CC] tmp/src/registration/transform/initialiser_helpers.o\r\n\r\ng++ -c -std=c++11 -DMRTRIX_BUILD_TYPE=\"release version\" -pthread -DMRTRIX_WINDOWS -mms-bitfields -Wa,-mbig-obj -D_FILE_OFFSET_BITS=64 -DMRTRIX_WORD64 -isystem /mingw64/include -DMRTRIX_TIFF_SUPPORT -isystem /mingw64/include -DEIGEN_FFTW_DEFAULT -isystem /mingw64/include -Wall -O3 -DNDEBUG -Isrc -I./core -Icmd -isystem /mingw64/include/eigen3 -DEIGEN_DONT_PARALLELIZE src/registration/transform/initialiser_helpers.cpp -o tmp/src/registration/transform/initialiser_helpers.o\r\n\r\nfailed with output\r\n\r\nIn file included from C:/msys64/mingw64/include/eigen3/Eigen/SparseCore:50,\r\n                 from C:/msys64/mingw64/include/eigen3/Eigen/Sparse:26,\r\n                 from C:/msys64/mingw64/include/eigen3/Eigen/Eigen:2,\r\n                 from src/registration/transform/search.h:21,\r\n                 from src/registration/transform/initialiser_helpers.cpp:20:\r\nC:/msys64/mingw64/include/eigen3/Eigen/src/SparseCore/SparseBlock.h: In member function 'Eigen::internal::sparse_matrix_block_impl<SparseMatrixType, BlockRows, BlockCols>::BlockType& Eigen::internal::sparse_matrix_block_impl<SparseMatrixType, BlockRows, BlockCols>::operator=(const BlockType&)':\r\nC:/msys64/mingw64/include/eigen3/Eigen/src/SparseCore/SparseBlock.h:216:33: error: expected primary-expression before '>' token\r\n       return operator=<BlockType>(other);\r\n                                 ^\r\n\r\n"}}
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