{"action":"created","issue":{"url":"https://api.github.com/repos/neuropoly/axondeepseg/issues/150","repository_url":"https://api.github.com/repos/neuropoly/axondeepseg","labels_url":"https://api.github.com/repos/neuropoly/axondeepseg/issues/150/labels{/name}","comments_url":"https://api.github.com/repos/neuropoly/axondeepseg/issues/150/comments","events_url":"https://api.github.com/repos/neuropoly/axondeepseg/issues/150/events","html_url":"https://github.com/neuropoly/axondeepseg/pull/150","id":379241455,"node_id":"MDExOlB1bGxSZXF1ZXN0MjI5NzU2Mzk4","number":150,"title":"training_guideline.ipynb: Few improvements","user":{"login":"jcohenadad","id":2482071,"node_id":"MDQ6VXNlcjI0ODIwNzE=","avatar_url":"https://avatars1.githubusercontent.com/u/2482071?v=4","gravatar_id":"","url":"https://api.github.com/users/jcohenadad","html_url":"https://github.com/jcohenadad","followers_url":"https://api.github.com/users/jcohenadad/followers","following_url":"https://api.github.com/users/jcohenadad/following{/other_user}","gists_url":"https://api.github.com/users/jcohenadad/gists{/gist_id}","starred_url":"https://api.github.com/users/jcohenadad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jcohenadad/subscriptions","organizations_url":"https://api.github.com/users/jcohenadad/orgs","repos_url":"https://api.github.com/users/jcohenadad/repos","events_url":"https://api.github.com/users/jcohenadad/events{/privacy}","received_events_url":"https://api.github.com/users/jcohenadad/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"jcohenadad","id":2482071,"node_id":"MDQ6VXNlcjI0ODIwNzE=","avatar_url":"https://avatars1.githubusercontent.com/u/2482071?v=4","gravatar_id":"","url":"https://api.github.com/users/jcohenadad","html_url":"https://github.com/jcohenadad","followers_url":"https://api.github.com/users/jcohenadad/followers","following_url":"https://api.github.com/users/jcohenadad/following{/other_user}","gists_url":"https://api.github.com/users/jcohenadad/gists{/gist_id}","starred_url":"https://api.github.com/users/jcohenadad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jcohenadad/subscriptions","organizations_url":"https://api.github.com/users/jcohenadad/orgs","repos_url":"https://api.github.com/users/jcohenadad/repos","events_url":"https://api.github.com/users/jcohenadad/events{/privacy}","received_events_url":"https://api.github.com/users/jcohenadad/received_events","type":"User","site_admin":false},"assignees":[{"login":"jcohenadad","id":2482071,"node_id":"MDQ6VXNlcjI0ODIwNzE=","avatar_url":"https://avatars1.githubusercontent.com/u/2482071?v=4","gravatar_id":"","url":"https://api.github.com/users/jcohenadad","html_url":"https://github.com/jcohenadad","followers_url":"https://api.github.com/users/jcohenadad/followers","following_url":"https://api.github.com/users/jcohenadad/following{/other_user}","gists_url":"https://api.github.com/users/jcohenadad/gists{/gist_id}","starred_url":"https://api.github.com/users/jcohenadad/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jcohenadad/subscriptions","organizations_url":"https://api.github.com/users/jcohenadad/orgs","repos_url":"https://api.github.com/users/jcohenadad/repos","events_url":"https://api.github.com/users/jcohenadad/events{/privacy}","received_events_url":"https://api.github.com/users/jcohenadad/received_events","type":"User","site_admin":false}],"milestone":null,"comments":10,"created_at":"2018-11-09T16:55:52Z","updated_at":"2018-11-15T20:59:21Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/neuropoly/axondeepseg/pulls/150","html_url":"https://github.com/neuropoly/axondeepseg/pull/150","diff_url":"https://github.com/neuropoly/axondeepseg/pull/150.diff","patch_url":"https://github.com/neuropoly/axondeepseg/pull/150.patch"},"body":"Clarification of notebook usage for training DL model (`training_guideline.ipynb`) + minor refactoring and doc clarification of `apply_model.py`. Modifications include:\r\n- Automatic download of example data (hosted on OSF)\r\n- No more ugly hard-coded path (the whole notebook now runs automatically without having to set local paths).\r\n- Added lighter architecture to accommodate cheaper GPU (e.g. NVIDIA TitanX)\r\n"},"comment":{"url":"https://api.github.com/repos/neuropoly/axondeepseg/issues/comments/439187887","html_url":"https://github.com/neuropoly/axondeepseg/pull/150#issuecomment-439187887","issue_url":"https://api.github.com/repos/neuropoly/axondeepseg/issues/150","id":439187887,"node_id":"MDEyOklzc3VlQ29tbWVudDQzOTE4Nzg4Nw==","user":{"login":"mathieuboudreau","id":1421029,"node_id":"MDQ6VXNlcjE0MjEwMjk=","avatar_url":"https://avatars3.githubusercontent.com/u/1421029?v=4","gravatar_id":"","url":"https://api.github.com/users/mathieuboudreau","html_url":"https://github.com/mathieuboudreau","followers_url":"https://api.github.com/users/mathieuboudreau/followers","following_url":"https://api.github.com/users/mathieuboudreau/following{/other_user}","gists_url":"https://api.github.com/users/mathieuboudreau/gists{/gist_id}","starred_url":"https://api.github.com/users/mathieuboudreau/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mathieuboudreau/subscriptions","organizations_url":"https://api.github.com/users/mathieuboudreau/orgs","repos_url":"https://api.github.com/users/mathieuboudreau/repos","events_url":"https://api.github.com/users/mathieuboudreau/events{/privacy}","received_events_url":"https://api.github.com/users/mathieuboudreau/received_events","type":"User","site_admin":false},"created_at":"2018-11-15T20:59:21Z","updated_at":"2018-11-15T20:59:21Z","author_association":"MEMBER","body":"@alzaia Ok thanks! Yeah that makes sense. I can see that the code you linked used to expect the way on the left, but then also hardcoded the values using a variable called \"transformations\", so they weren't being set by the actual config file I think. Probably just a bunch of overlapping fixes made by different devs - I'm sure we can reintroduce the old notation (ideally while keeping retroactive compatibility to other config files with the new notation that are now floating around)."}}
{"actor":{"display_login":"mathieuboudreau"}}