{"action":"created","issue":{"url":"https://api.github.com/repos/LanguageMachines/PICCL/issues/40","repository_url":"https://api.github.com/repos/LanguageMachines/PICCL","labels_url":"https://api.github.com/repos/LanguageMachines/PICCL/issues/40/labels{/name}","comments_url":"https://api.github.com/repos/LanguageMachines/PICCL/issues/40/comments","events_url":"https://api.github.com/repos/LanguageMachines/PICCL/issues/40/events","html_url":"https://github.com/LanguageMachines/PICCL/issues/40","id":343432593,"node_id":"MDU6SXNzdWUzNDM0MzI1OTM=","number":40,"title":"Output does not show up for download when only OCR is enabled","user":{"login":"JessedeDoes","id":1109972,"node_id":"MDQ6VXNlcjExMDk5NzI=","avatar_url":"https://avatars1.githubusercontent.com/u/1109972?v=4","gravatar_id":"","url":"https://api.github.com/users/JessedeDoes","html_url":"https://github.com/JessedeDoes","followers_url":"https://api.github.com/users/JessedeDoes/followers","following_url":"https://api.github.com/users/JessedeDoes/following{/other_user}","gists_url":"https://api.github.com/users/JessedeDoes/gists{/gist_id}","starred_url":"https://api.github.com/users/JessedeDoes/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/JessedeDoes/subscriptions","organizations_url":"https://api.github.com/users/JessedeDoes/orgs","repos_url":"https://api.github.com/users/JessedeDoes/repos","events_url":"https://api.github.com/users/JessedeDoes/events{/privacy}","received_events_url":"https://api.github.com/users/JessedeDoes/received_events","type":"User","site_admin":false},"labels":[{"id":568958109,"node_id":"MDU6TGFiZWw1Njg5NTgxMDk=","url":"https://api.github.com/repos/LanguageMachines/PICCL/labels/bug","name":"bug","color":"ee0701","default":true},{"id":698789169,"node_id":"MDU6TGFiZWw2OTg3ODkxNjk=","url":"https://api.github.com/repos/LanguageMachines/PICCL/labels/ready","name":"ready","color":"03e864","default":false}],"state":"open","locked":false,"assignee":{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},"assignees":[{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},{"login":"martinreynaert","id":4543315,"node_id":"MDQ6VXNlcjQ1NDMzMTU=","avatar_url":"https://avatars2.githubusercontent.com/u/4543315?v=4","gravatar_id":"","url":"https://api.github.com/users/martinreynaert","html_url":"https://github.com/martinreynaert","followers_url":"https://api.github.com/users/martinreynaert/followers","following_url":"https://api.github.com/users/martinreynaert/following{/other_user}","gists_url":"https://api.github.com/users/martinreynaert/gists{/gist_id}","starred_url":"https://api.github.com/users/martinreynaert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/martinreynaert/subscriptions","organizations_url":"https://api.github.com/users/martinreynaert/orgs","repos_url":"https://api.github.com/users/martinreynaert/repos","events_url":"https://api.github.com/users/martinreynaert/events{/privacy}","received_events_url":"https://api.github.com/users/martinreynaert/received_events","type":"User","site_admin":false}],"milestone":{"url":"https://api.github.com/repos/LanguageMachines/PICCL/milestones/2","html_url":"https://github.com/LanguageMachines/PICCL/milestone/2","labels_url":"https://api.github.com/repos/LanguageMachines/PICCL/milestones/2/labels","id":3576237,"node_id":"MDk6TWlsZXN0b25lMzU3NjIzNw==","number":2,"title":"v0.6.4","description":null,"creator":{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},"open_issues":1,"closed_issues":0,"state":"open","created_at":"2018-08-16T14:25:59Z","updated_at":"2018-08-16T14:25:59Z","due_on":null,"closed_at":null},"comments":1,"created_at":"2018-07-22T19:40:18Z","updated_at":"2018-11-15T17:31:21Z","closed_at":null,"author_association":"NONE","body":"![image](https://user-images.githubusercontent.com/1109972/43049393-7925147e-8df7-11e8-8f00-912c65a9203c.png)\r\n\r\nApparently, the OCR worked fine, and I do get output when I specify further processing steps.\r\n\r\nLog file:\r\n\r\n```\r\n[CLAM Dispatcher] Adding to PYTHONPATH: /var/www/lamachine2/weblamachine/lib/python3.5/site-packages/PICCL-0.6.2-py3.5.egg/picclservice\r\n[CLAM Dispatcher] Started CLAM Dispatcher v2.3.3 with picclservice.picclservice (2018-07-22 21:35:56)\r\n[CLAM Dispatcher] Running /var/www/lamachine2/weblamachine/bin/python \"/var/www/lamachine2/weblamachine/lib/python3.5/site-packages/PICCL-0.6.2-py3.5.egg/picclservice/picclservice_wrapper.py\" \"/var/www/webservices-lst/live/writable/piccl/projects/jessededoes/mySixth/clam.xml\" \"/var/www/webservices-lst/live/writable/piccl/projects/jessededoes/mySixth/.status\" \"/var/www/webservices-lst/live/writable/piccl/projects/jessededoes/mySixth/input/\" \"/var/www/webservices-lst/live/writable/piccl/projects/jessededoes/mySixth/output/\" \"/var/www/lamachine2/weblamachine/opt/PICCL\" \"/var/www/lamachine2/weblamachine/opt/PICCL\"\r\n[CLAM Dispatcher] Running with pid 123846 (2018-07-22 21:35:56)\r\nRunning PICCL from /var/www/lamachine2/weblamachine/opt/PICCL/\r\nSystem default encoding:  utf-8\r\nForcing en_US.UTF-8 locale...\r\nCommand: /var/www/lamachine2/weblamachine/opt/PICCL/ocr.nf --inputdir \"/var/www/webservices-lst/live/writable/piccl/projects/jessededoes/mySixth/input/\" --outputdir ocr_output --inputtype \"tif\" --language \"nld\" -with-trace >ocr.nextflow.out.log 2>ocr.nextflow.err.log\r\n[ocr] Nextflow standard error output\r\n-------------------------------------------------\r\n\r\n[ocr] Nextflow standard output\r\n-------------------------------------------------\r\nN E X T F L O W  ~  version 0.30.1\r\nLaunching `/var/www/lamachine2/weblamachine/opt/PICCL/ocr.nf` [compassionate_woese] - revision: 76d7839f83\r\nWARN: The config file defines settings for an unknown process: indexer\r\n--------------------------\r\nOCR Pipeline\r\n--------------------------\r\n[warm up] executor > local\r\n[f9/156e4c] Submitted process > tesseract (1)\r\n[0b/41b5b8] Submitted process > ocrpages_to_foliapages (1)\r\n[c1/817202] Submitted process > foliacat (1)\r\nOCR output document written to ocr_output/1936.tiff.folia.xml\r\n\r\n[ocr] Nextflow trace summary\r\n-------------------------------------------------\r\ntask_id\thash\tnative_id\tname\tstatus\texit\tsubmit\tduration\trealtime\t%cpu\trss\tvmem\trchar\twchar\r\n1\tf9/156e4c\t124008\ttesseract (1)\tCOMPLETED\t0\t2018-07-22 21:35:58.605\t10.8s\t10s\t102.1%\t75.9 MB\t130.7 MB\t17 MB\t64 B\r\n2\t0b/41b5b8\t124286\tocrpages_to_foliapages (1)\tCOMPLETED\t0\t2018-07-22 21:36:09.464\t5.6s\t1.3s\t10.8%\t12.6 MB\t52 MB\t534.4 KB\t26.8 KB\r\n3\tc1/817202\t125005\tfoliacat (1)\tCOMPLETED\t0\t2018-07-22 21:36:15.085\t5.6s\t1.3s\t9.6%\t12.5 MB\t52 MB\t534.6 KB\t26.8 KB\r\n\r\nTICCL skipped as requested...\r\n[CLAM Dispatcher] Process ended (2018-07-22 21:36:21, 25.029313s) \r\n[CLAM Dispatcher] Removing temporary files\r\n[CLAM Dispatcher] Finished (2018-07-22 21:36:21), exit code 0, dispatcher wait time 25.0s, duration 25.029828s\r\n```"},"comment":{"url":"https://api.github.com/repos/LanguageMachines/PICCL/issues/comments/439123922","html_url":"https://github.com/LanguageMachines/PICCL/issues/40#issuecomment-439123922","issue_url":"https://api.github.com/repos/LanguageMachines/PICCL/issues/40","id":439123922,"node_id":"MDEyOklzc3VlQ29tbWVudDQzOTEyMzkyMg==","user":{"login":"proycon","id":75427,"node_id":"MDQ6VXNlcjc1NDI3","avatar_url":"https://avatars3.githubusercontent.com/u/75427?v=4","gravatar_id":"","url":"https://api.github.com/users/proycon","html_url":"https://github.com/proycon","followers_url":"https://api.github.com/users/proycon/followers","following_url":"https://api.github.com/users/proycon/following{/other_user}","gists_url":"https://api.github.com/users/proycon/gists{/gist_id}","starred_url":"https://api.github.com/users/proycon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/proycon/subscriptions","organizations_url":"https://api.github.com/users/proycon/orgs","repos_url":"https://api.github.com/users/proycon/repos","events_url":"https://api.github.com/users/proycon/events{/privacy}","received_events_url":"https://api.github.com/users/proycon/received_events","type":"User","site_admin":false},"created_at":"2018-11-15T17:31:21Z","updated_at":"2018-11-15T17:31:21Z","author_association":"MEMBER","body":"Ok, this is now finally fixed after testing (sorry for the delay). I might change some more things and then do a release."}}
{"actor":{"display_login":"proycon"}}