{"action":"created","issue":{"url":"https://api.github.com/repos/chanzuckerberg/starfish/issues/74","repository_url":"https://api.github.com/repos/chanzuckerberg/starfish","labels_url":"https://api.github.com/repos/chanzuckerberg/starfish/issues/74/labels{/name}","comments_url":"https://api.github.com/repos/chanzuckerberg/starfish/issues/74/comments","events_url":"https://api.github.com/repos/chanzuckerberg/starfish/issues/74/events","html_url":"https://github.com/chanzuckerberg/starfish/pull/74","id":297181399,"number":74,"title":"Upload notebooks + code to localize sample dataset","user":{"login":"ambrosejcarr","id":5239152,"avatar_url":"https://avatars1.githubusercontent.com/u/5239152?v=4","gravatar_id":"","url":"https://api.github.com/users/ambrosejcarr","html_url":"https://github.com/ambrosejcarr","followers_url":"https://api.github.com/users/ambrosejcarr/followers","following_url":"https://api.github.com/users/ambrosejcarr/following{/other_user}","gists_url":"https://api.github.com/users/ambrosejcarr/gists{/gist_id}","starred_url":"https://api.github.com/users/ambrosejcarr/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ambrosejcarr/subscriptions","organizations_url":"https://api.github.com/users/ambrosejcarr/orgs","repos_url":"https://api.github.com/users/ambrosejcarr/repos","events_url":"https://api.github.com/users/ambrosejcarr/events{/privacy}","received_events_url":"https://api.github.com/users/ambrosejcarr/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2018-02-14T17:29:19Z","updated_at":"2018-02-21T07:36:28Z","closed_at":null,"author_association":"COLLABORATOR","pull_request":{"url":"https://api.github.com/repos/chanzuckerberg/starfish/pulls/74","html_url":"https://github.com/chanzuckerberg/starfish/pull/74","diff_url":"https://github.com/chanzuckerberg/starfish/pull/74.diff","patch_url":"https://github.com/chanzuckerberg/starfish/pull/74.patch"},"body":"**Not for merging**\r\n\r\n* Adds code to localize data from from AWS. Right now it's coded against a private pe'er repo, but if we switch to a public repo using the same pattern, I've verified everything works. I will need to send you my zip files, which have been modified to have consistent structure across the datasets:\r\n```\r\nDATASET_NAME/\r\n    /codebook.csv\r\n    /fov_001\r\n        /org.json\r\n        /<images>.tiff\r\n```\r\n* Restricts numpy version. 1.14 deprecated a bunch of things and matplotlib needs to catch up. \r\n* added worked notebooks with notes explaining how the two datasets should be processed. I would be extremely surprised if I got everything right. Read my notes carefully. :)\r\n\r\nAddresses #54, #66"},"comment":{"url":"https://api.github.com/repos/chanzuckerberg/starfish/issues/comments/367238081","html_url":"https://github.com/chanzuckerberg/starfish/pull/74#issuecomment-367238081","issue_url":"https://api.github.com/repos/chanzuckerberg/starfish/issues/74","id":367238081,"user":{"login":"ttung","id":280924,"avatar_url":"https://avatars2.githubusercontent.com/u/280924?v=4","gravatar_id":"","url":"https://api.github.com/users/ttung","html_url":"https://github.com/ttung","followers_url":"https://api.github.com/users/ttung/followers","following_url":"https://api.github.com/users/ttung/following{/other_user}","gists_url":"https://api.github.com/users/ttung/gists{/gist_id}","starred_url":"https://api.github.com/users/ttung/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ttung/subscriptions","organizations_url":"https://api.github.com/users/ttung/orgs","repos_url":"https://api.github.com/users/ttung/repos","events_url":"https://api.github.com/users/ttung/events{/privacy}","received_events_url":"https://api.github.com/users/ttung/received_events","type":"User","site_admin":false},"created_at":"2018-02-21T07:36:28Z","updated_at":"2018-02-21T07:36:28Z","author_association":"MEMBER","body":"I think that it makes sense to build a generalized module that fetches a data set from http/S3/GS.  On top of that, we could build fetchers for specific data sets as convenience methods."}}
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