{"action":"created","issue":{"url":"https://api.github.com/repos/FePhyFoFum/phyx/issues/82","repository_url":"https://api.github.com/repos/FePhyFoFum/phyx","labels_url":"https://api.github.com/repos/FePhyFoFum/phyx/issues/82/labels{/name}","comments_url":"https://api.github.com/repos/FePhyFoFum/phyx/issues/82/comments","events_url":"https://api.github.com/repos/FePhyFoFum/phyx/issues/82/events","html_url":"https://github.com/FePhyFoFum/phyx/issues/82","id":322927284,"number":82,"title":"Is this normal behavior for \"pxcltr\"","user":{"login":"Cactusolo","id":7811840,"avatar_url":"https://avatars0.githubusercontent.com/u/7811840?v=4","gravatar_id":"","url":"https://api.github.com/users/Cactusolo","html_url":"https://github.com/Cactusolo","followers_url":"https://api.github.com/users/Cactusolo/followers","following_url":"https://api.github.com/users/Cactusolo/following{/other_user}","gists_url":"https://api.github.com/users/Cactusolo/gists{/gist_id}","starred_url":"https://api.github.com/users/Cactusolo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Cactusolo/subscriptions","organizations_url":"https://api.github.com/users/Cactusolo/orgs","repos_url":"https://api.github.com/users/Cactusolo/repos","events_url":"https://api.github.com/users/Cactusolo/events{/privacy}","received_events_url":"https://api.github.com/users/Cactusolo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":7,"created_at":"2018-05-14T18:21:16Z","updated_at":"2018-05-14T21:15:05Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nI was told that \"pxcltr\" is meant to remove 'knuckles' (i.e. 2-degree nodes), node annotations, etc, to keep a plain format. \r\n\r\nHowever, I used cmd like:\r\n`pxcltr -l -t Coweeta_ottid_nw_rename.tre` \r\nand \r\n`pxcltr -t Coweeta_ottid_nw_rename.tre`\r\n\r\nBut the results are the same, still keeping some internal labels, eg:\r\n\r\n**...**\r\n\r\n ||     ++ **mrcaott784ott8526**                                                    \r\n ||     ||  +---------------------------+ Asplenium montanum                    \r\n ||     ||                                                                      \r\n ||     || +----------------------------+ Polypodium virginianum                \r\n ||     || |                                                                    \r\n ||     |+-++mrcaott8526ott9790---------+ Polystichum acrostichoides            \r\n ||     |  ||                                                                   \r\n ||    ++ mrcaott784ott5078tt21809------+ Dryopteris intermedia                 \r\n ||    ||   | ++ mrcaott49169ott87323                                           \r\n ||    ||   +-++mrcaott21809ott49169----+ Dryopteris goldiana                   \r\n ||    ||     |                                                                 \r\n ||  +-+|mrcaott784ott11449-------------+ Dryopteris marginalis                 \r\n ||  | ||                                                                       \r\n ||  | |+-------------------------------+ Adiantum pedatum                      \r\n ||  | |                                                                        \r\n ||  | |+-------------------------------+ Pteridium aquilinum                   \r\n || ++ ott56622106                                                              \r\n || ||  +-------------------------------+ Dennstaedtia punctilobula             \r\n || ||                                                                          \r\n || || +--------------------------------+ Osmunda cinnamomea                    \r\n || |+-+ ott41629                                                               \r\n |+-+ mrcaott784ott3223-----------------+ Osmunda claytoniana                   \r\n |  |                                                                           \r\n |  |  +--------------------------------+ Botrychium alabamense                 \r\n |  |+-+ mrcaott33066ott113196                                                  \r\n |  ++ mrcaott33066ott756444------------+ Botrychium dissectum                  \r\n |   |                                                                          \r\n |   +----------------------------------+ Botrychium virginianum                \r\n |                                                                              \r\n |  +-----------------------------------+ Selaginella apoda                     \r\n |+-+ **_mrcaott3661ott18736_**                                                       \r\n || +-----------------------------------+ Isoetes engelmannii                   \r\n ||                                                                             \r\n ++ ott6133720--------------------------+ Lycopodium clavatum                   \r\n  | |                                                                           \r\n  +---ott719013-------------------------+ Lycopodium lucidulum                  \r\n    |                                                                           \r\n    +-----------------------------------+ Lycopodium flabelliforme \r\n\r\n_Please let me know if you need tree file._\r\n\r\nThanks!\r\n"},"comment":{"url":"https://api.github.com/repos/FePhyFoFum/phyx/issues/comments/388965268","html_url":"https://github.com/FePhyFoFum/phyx/issues/82#issuecomment-388965268","issue_url":"https://api.github.com/repos/FePhyFoFum/phyx/issues/82","id":388965268,"user":{"login":"josephwb","id":808499,"avatar_url":"https://avatars0.githubusercontent.com/u/808499?v=4","gravatar_id":"","url":"https://api.github.com/users/josephwb","html_url":"https://github.com/josephwb","followers_url":"https://api.github.com/users/josephwb/followers","following_url":"https://api.github.com/users/josephwb/following{/other_user}","gists_url":"https://api.github.com/users/josephwb/gists{/gist_id}","starred_url":"https://api.github.com/users/josephwb/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/josephwb/subscriptions","organizations_url":"https://api.github.com/users/josephwb/orgs","repos_url":"https://api.github.com/users/josephwb/repos","events_url":"https://api.github.com/users/josephwb/events{/privacy}","received_events_url":"https://api.github.com/users/josephwb/received_events","type":"User","site_admin":false},"created_at":"2018-05-14T21:15:05Z","updated_at":"2018-05-14T21:15:05Z","author_association":"MEMBER","body":"Oof. Should be working with this 940b92702fd0d04036dbb27ff0ef8619df3d76c6."}}
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