{"action":"created","issue":{"url":"https://api.github.com/repos/DLMtool/DLMtool/issues/214","repository_url":"https://api.github.com/repos/DLMtool/DLMtool","labels_url":"https://api.github.com/repos/DLMtool/DLMtool/issues/214/labels{/name}","comments_url":"https://api.github.com/repos/DLMtool/DLMtool/issues/214/comments","events_url":"https://api.github.com/repos/DLMtool/DLMtool/issues/214/events","html_url":"https://github.com/DLMtool/DLMtool/issues/214","id":350978402,"node_id":"MDU6SXNzdWUzNTA5Nzg0MDI=","number":214,"title":"Warning msn","user":{"login":"MauroMardones","id":16666293,"node_id":"MDQ6VXNlcjE2NjY2Mjkz","avatar_url":"https://avatars3.githubusercontent.com/u/16666293?v=4","gravatar_id":"","url":"https://api.github.com/users/MauroMardones","html_url":"https://github.com/MauroMardones","followers_url":"https://api.github.com/users/MauroMardones/followers","following_url":"https://api.github.com/users/MauroMardones/following{/other_user}","gists_url":"https://api.github.com/users/MauroMardones/gists{/gist_id}","starred_url":"https://api.github.com/users/MauroMardones/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/MauroMardones/subscriptions","organizations_url":"https://api.github.com/users/MauroMardones/orgs","repos_url":"https://api.github.com/users/MauroMardones/repos","events_url":"https://api.github.com/users/MauroMardones/events{/privacy}","received_events_url":"https://api.github.com/users/MauroMardones/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-08-15T21:44:19Z","updated_at":"2018-08-15T23:52:02Z","closed_at":null,"author_association":"NONE","body":"i don't know if this is a bug or just my own error;\r\n\r\nWarning in optimize(optQ, log(bounds), depc = D[x], SSB0c = SSB0[x], nareas,  :\r\n  NA/Inf replaced by maximum positive value\r\n16 sims can't get down to the lower bound on depletion\r\n3 sims can't get to the upper bound on depletion\r\nError in runMSE_int(OM, MPs, CheckMPs, timelimit, Hist, ntrials, fracD,  : \r\n  Change OM@seed and try again for a complete new sample, modify the input parameters, or increase ntrials\r\n\r\nYou can help me? I've been in this traffic jam for two days!\r\nappreciate"},"comment":{"url":"https://api.github.com/repos/DLMtool/DLMtool/issues/comments/413375845","html_url":"https://github.com/DLMtool/DLMtool/issues/214#issuecomment-413375845","issue_url":"https://api.github.com/repos/DLMtool/DLMtool/issues/214","id":413375845,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMzM3NTg0NQ==","user":{"login":"AdrianHordyk","id":5696790,"node_id":"MDQ6VXNlcjU2OTY3OTA=","avatar_url":"https://avatars0.githubusercontent.com/u/5696790?v=4","gravatar_id":"","url":"https://api.github.com/users/AdrianHordyk","html_url":"https://github.com/AdrianHordyk","followers_url":"https://api.github.com/users/AdrianHordyk/followers","following_url":"https://api.github.com/users/AdrianHordyk/following{/other_user}","gists_url":"https://api.github.com/users/AdrianHordyk/gists{/gist_id}","starred_url":"https://api.github.com/users/AdrianHordyk/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AdrianHordyk/subscriptions","organizations_url":"https://api.github.com/users/AdrianHordyk/orgs","repos_url":"https://api.github.com/users/AdrianHordyk/repos","events_url":"https://api.github.com/users/AdrianHordyk/events{/privacy}","received_events_url":"https://api.github.com/users/AdrianHordyk/received_events","type":"User","site_admin":false},"created_at":"2018-08-15T23:52:02Z","updated_at":"2018-08-15T23:52:02Z","author_association":"CONTRIBUTOR","body":"There are a couple of problems with the OM. Note that the 1st and 2nd values in the OM slots are lower and upper bounds from a uniform distribution. There are ways to include other distributions, but this is done outside of Excel (see the Custom Parameters section in the user-guide [`userguide()`]. \r\n\r\nFor example, Linf is currently 138 and 0.2, but is expecting lower and upper bounds. Similiar with depletion (D) which is currently 0.5 and 0.25. This represents a uniform distribution between 0.25 and 0.5. Standard convention is lower bound in column B and upper in column C.\r\n\r\nA few other things:\r\n- size_area_1, frac_area_1, and prob_staying must be > 0 & < 1\r\n- Vmaxlen and Rmaxlen are values between 0 and 1 (vulnerability of fish at Linf)\r\n- selectivity parameters should be lower and upper bounds\r\n\r\nNote also that the OM has lengths of selectivity & retention >> length of maturity and very low discard mortality. Under these conditions, the stock may be almost invulnerable to high fishing mortality, and it may be difficult or impossible for the population dynamics model to reduce biomass down to low levels of depletion (the last part of the error you posted above).  \r\n\r\nLet me know if you have any other issues. We'd love to learn more about your application of DLMtool to Chile fisheries."}}
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