{"action":"created","issue":{"url":"https://api.github.com/repos/s-andrews/SeqMonk/issues/105","repository_url":"https://api.github.com/repos/s-andrews/SeqMonk","labels_url":"https://api.github.com/repos/s-andrews/SeqMonk/issues/105/labels{/name}","comments_url":"https://api.github.com/repos/s-andrews/SeqMonk/issues/105/comments","events_url":"https://api.github.com/repos/s-andrews/SeqMonk/issues/105/events","html_url":"https://github.com/s-andrews/SeqMonk/issues/105","id":333567540,"node_id":"MDU6SXNzdWUzMzM1Njc1NDA=","number":105,"title":"Long words in feature names or descriptions break EMBL formatting","user":{"login":"s-andrews","id":8157923,"node_id":"MDQ6VXNlcjgxNTc5MjM=","avatar_url":"https://avatars2.githubusercontent.com/u/8157923?v=4","gravatar_id":"","url":"https://api.github.com/users/s-andrews","html_url":"https://github.com/s-andrews","followers_url":"https://api.github.com/users/s-andrews/followers","following_url":"https://api.github.com/users/s-andrews/following{/other_user}","gists_url":"https://api.github.com/users/s-andrews/gists{/gist_id}","starred_url":"https://api.github.com/users/s-andrews/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/s-andrews/subscriptions","organizations_url":"https://api.github.com/users/s-andrews/orgs","repos_url":"https://api.github.com/users/s-andrews/repos","events_url":"https://api.github.com/users/s-andrews/events{/privacy}","received_events_url":"https://api.github.com/users/s-andrews/received_events","type":"User","site_admin":false},"labels":[{"id":482711233,"node_id":"MDU6TGFiZWw0ODI3MTEyMzM=","url":"https://api.github.com/repos/s-andrews/SeqMonk/labels/bug","name":"bug","color":"ee0701","default":true}],"state":"closed","locked":false,"assignee":{"login":"s-andrews","id":8157923,"node_id":"MDQ6VXNlcjgxNTc5MjM=","avatar_url":"https://avatars2.githubusercontent.com/u/8157923?v=4","gravatar_id":"","url":"https://api.github.com/users/s-andrews","html_url":"https://github.com/s-andrews","followers_url":"https://api.github.com/users/s-andrews/followers","following_url":"https://api.github.com/users/s-andrews/following{/other_user}","gists_url":"https://api.github.com/users/s-andrews/gists{/gist_id}","starred_url":"https://api.github.com/users/s-andrews/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/s-andrews/subscriptions","organizations_url":"https://api.github.com/users/s-andrews/orgs","repos_url":"https://api.github.com/users/s-andrews/repos","events_url":"https://api.github.com/users/s-andrews/events{/privacy}","received_events_url":"https://api.github.com/users/s-andrews/received_events","type":"User","site_admin":false},"assignees":[{"login":"s-andrews","id":8157923,"node_id":"MDQ6VXNlcjgxNTc5MjM=","avatar_url":"https://avatars2.githubusercontent.com/u/8157923?v=4","gravatar_id":"","url":"https://api.github.com/users/s-andrews","html_url":"https://github.com/s-andrews","followers_url":"https://api.github.com/users/s-andrews/followers","following_url":"https://api.github.com/users/s-andrews/following{/other_user}","gists_url":"https://api.github.com/users/s-andrews/gists{/gist_id}","starred_url":"https://api.github.com/users/s-andrews/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/s-andrews/subscriptions","organizations_url":"https://api.github.com/users/s-andrews/orgs","repos_url":"https://api.github.com/users/s-andrews/repos","events_url":"https://api.github.com/users/s-andrews/events{/privacy}","received_events_url":"https://api.github.com/users/s-andrews/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-06-19T08:24:49Z","updated_at":"2018-07-04T12:00:10Z","closed_at":"2018-07-04T12:00:10Z","author_association":"OWNER","body":"We use EMBL format files to store the standard genomes.  This has a line length limit which causes breakage when feature names or descriptions have super long words in them.\r\n\r\nFor example:\r\n\r\nENSMUSG00000039621iption=phosphatidylinositol-3,4,5-trisphosphate-dependentRac exchange factor 1 [Source:MGI Symbol;Acc:MGI:3040696]"},"comment":{"url":"https://api.github.com/repos/s-andrews/SeqMonk/issues/comments/402458081","html_url":"https://github.com/s-andrews/SeqMonk/issues/105#issuecomment-402458081","issue_url":"https://api.github.com/repos/s-andrews/SeqMonk/issues/105","id":402458081,"node_id":"MDEyOklzc3VlQ29tbWVudDQwMjQ1ODA4MQ==","user":{"login":"s-andrews","id":8157923,"node_id":"MDQ6VXNlcjgxNTc5MjM=","avatar_url":"https://avatars2.githubusercontent.com/u/8157923?v=4","gravatar_id":"","url":"https://api.github.com/users/s-andrews","html_url":"https://github.com/s-andrews","followers_url":"https://api.github.com/users/s-andrews/followers","following_url":"https://api.github.com/users/s-andrews/following{/other_user}","gists_url":"https://api.github.com/users/s-andrews/gists{/gist_id}","starred_url":"https://api.github.com/users/s-andrews/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/s-andrews/subscriptions","organizations_url":"https://api.github.com/users/s-andrews/orgs","repos_url":"https://api.github.com/users/s-andrews/repos","events_url":"https://api.github.com/users/s-andrews/events{/privacy}","received_events_url":"https://api.github.com/users/s-andrews/received_events","type":"User","site_admin":false},"created_at":"2018-07-04T12:00:10Z","updated_at":"2018-07-04T12:00:10Z","author_association":"OWNER","body":"It looks like Ensembl might already have addressed this.  I had a look in the newer Ensembl genomes and I can't find any more of these broken entries.\r\n\r\nIn cases where it used to break I can now see that the super-long words in descriptions have had spaces inserted into them (presumably to fix this exact issue).\r\n\r\nAs we can't fix historical genomes anyway, I'm going to close this as new genomes will be fixed as and when they are reprocessed."}}
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