{"action":"closed","issue":{"url":"https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology/issues/168","repository_url":"https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology","labels_url":"https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology/issues/168/labels{/name}","comments_url":"https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology/issues/168/comments","events_url":"https://api.github.com/repos/FlyBase/drosophila-anatomy-developmental-ontology/issues/168/events","html_url":"https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/issues/168","id":316352754,"number":168,"title":"FBbt save to OBO from Protege fails","user":{"login":"dosumis","id":112839,"avatar_url":"https://avatars3.githubusercontent.com/u/112839?v=4","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":{"login":"dosumis","id":112839,"avatar_url":"https://avatars3.githubusercontent.com/u/112839?v=4","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false},"assignees":[{"login":"dosumis","id":112839,"avatar_url":"https://avatars3.githubusercontent.com/u/112839?v=4","gravatar_id":"","url":"https://api.github.com/users/dosumis","html_url":"https://github.com/dosumis","followers_url":"https://api.github.com/users/dosumis/followers","following_url":"https://api.github.com/users/dosumis/following{/other_user}","gists_url":"https://api.github.com/users/dosumis/gists{/gist_id}","starred_url":"https://api.github.com/users/dosumis/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dosumis/subscriptions","organizations_url":"https://api.github.com/users/dosumis/orgs","repos_url":"https://api.github.com/users/dosumis/repos","events_url":"https://api.github.com/users/dosumis/events{/privacy}","received_events_url":"https://api.github.com/users/dosumis/received_events","type":"User","site_admin":false}],"milestone":null,"comments":1,"created_at":"2018-04-20T17:36:28Z","updated_at":"2018-04-20T17:59:19Z","closed_at":"2018-04-20T17:59:19Z","author_association":"COLLABORATOR","body":"The only way to edit in Protege right now is to save as OWL and then convert back with some other tool  (roundtrip via ROBOT works).\r\n\r\nI suspect this explains the problem: https://github.com/protegeproject/protege/issues/501\r\n\r\nThis means we can fix by tweaking the OBO file. \r\n\r\nPossible clues from log: \r\n\r\nThis looks suspicious:\r\n\r\n2018-04-20 18:22:07.753 [pool-3-thread-1] WARN  OWLAPIOwl2Obo    MASKING ERROR «Conflicting id definitions: 1) composed_primarily_of  2)RO:0002473»\r\n\r\n(There are also lots of these:\r\n2018-04-20 18:22:07.730 [pool-3-thread-1] ERROR OWLAPIOwl2Obo    Duplicate clause 'alt_id( FBbt:00002794)' generated in frame: FBbt:00002786\r\n\r\nbut I think probably a harmless artefact of move to generating stanzas  from alt_ids.)\r\n"}}
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