{"action":"created","issue":{"url":"https://api.github.com/repos/pombase/website/issues/720","repository_url":"https://api.github.com/repos/pombase/website","labels_url":"https://api.github.com/repos/pombase/website/issues/720/labels{/name}","comments_url":"https://api.github.com/repos/pombase/website/issues/720/comments","events_url":"https://api.github.com/repos/pombase/website/issues/720/events","html_url":"https://github.com/pombase/website/issues/720","id":309139980,"number":720,"title":"JBrowse config file outstanding tasks","user":{"login":"Antonialock","id":12727506,"avatar_url":"https://avatars3.githubusercontent.com/u/12727506?v=4","gravatar_id":"","url":"https://api.github.com/users/Antonialock","html_url":"https://github.com/Antonialock","followers_url":"https://api.github.com/users/Antonialock/followers","following_url":"https://api.github.com/users/Antonialock/following{/other_user}","gists_url":"https://api.github.com/users/Antonialock/gists{/gist_id}","starred_url":"https://api.github.com/users/Antonialock/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Antonialock/subscriptions","organizations_url":"https://api.github.com/users/Antonialock/orgs","repos_url":"https://api.github.com/users/Antonialock/repos","events_url":"https://api.github.com/users/Antonialock/events{/privacy}","received_events_url":"https://api.github.com/users/Antonialock/received_events","type":"User","site_admin":false},"labels":[{"id":442994835,"url":"https://api.github.com/repos/pombase/website/labels/discuss","name":"discuss","color":"b60205","default":false},{"id":418906034,"url":"https://api.github.com/repos/pombase/website/labels/genome%20browser","name":"genome browser","color":"fef2c0","default":false}],"state":"open","locked":false,"assignee":{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars2.githubusercontent.com/u/90474?v=4","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},"assignees":[{"login":"kimrutherford","id":90474,"avatar_url":"https://avatars2.githubusercontent.com/u/90474?v=4","gravatar_id":"","url":"https://api.github.com/users/kimrutherford","html_url":"https://github.com/kimrutherford","followers_url":"https://api.github.com/users/kimrutherford/followers","following_url":"https://api.github.com/users/kimrutherford/following{/other_user}","gists_url":"https://api.github.com/users/kimrutherford/gists{/gist_id}","starred_url":"https://api.github.com/users/kimrutherford/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/kimrutherford/subscriptions","organizations_url":"https://api.github.com/users/kimrutherford/orgs","repos_url":"https://api.github.com/users/kimrutherford/repos","events_url":"https://api.github.com/users/kimrutherford/events{/privacy}","received_events_url":"https://api.github.com/users/kimrutherford/received_events","type":"User","site_admin":false},{"login":"ValWood","id":7359272,"avatar_url":"https://avatars2.githubusercontent.com/u/7359272?v=4","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false}],"milestone":null,"comments":1,"created_at":"2018-03-27T21:26:23Z","updated_at":"2018-03-28T07:18:13Z","closed_at":null,"author_association":"OWNER","body":" - Intron branch point data is not showing (was showing in old browser)\r\n - Variation track is missing\r\n - Wilhelm data is not live (wasn't in ensembl either) I curated the labels\r\n - I added some additional columns that we could be showing (at least in the \"about this track\" section)\r\n- I think it would be nice to have a couple of additional filters e.g. \"gene\" (filter on label called \"target_gene\" and \"allele\" (filter on  column headed \"allele(s)) - if this is unpopulated then it is sort of like a WT dataset, but there may be background mutations (how could we label those those? @ValWood ), and for the column headed cycle/phase/strand (feel free to relabel these headers by the way, I just came up with some quick grouping term)\r\n - SGD label the \"annotated sequence features\" \"canvas features\" we could go with that for forward/reverse strand + genome sequence and sticky at the top of the filters? (I can't see those tracks in the config file so maybe belongs to a different ticket..)\r\n - \"publication date\" (year) is probably not a useful filter? study ID, PMID, and first author information should suffice for people to find the right dataset if they come from \"that route\"\r\n\r\nNote, Val requested in old ticket that we \"don't show\" dbXrefs other than GEO, but we need to because some data was deposited in arrayexpress, etc. I therefore split this into \"study_ID\" and \"DB\" eg. \r\nGSE24360 | GEO\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/pombase/website/issues/comments/376786623","html_url":"https://github.com/pombase/website/issues/720#issuecomment-376786623","issue_url":"https://api.github.com/repos/pombase/website/issues/720","id":376786623,"user":{"login":"ValWood","id":7359272,"avatar_url":"https://avatars2.githubusercontent.com/u/7359272?v=4","gravatar_id":"","url":"https://api.github.com/users/ValWood","html_url":"https://github.com/ValWood","followers_url":"https://api.github.com/users/ValWood/followers","following_url":"https://api.github.com/users/ValWood/following{/other_user}","gists_url":"https://api.github.com/users/ValWood/gists{/gist_id}","starred_url":"https://api.github.com/users/ValWood/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ValWood/subscriptions","organizations_url":"https://api.github.com/users/ValWood/orgs","repos_url":"https://api.github.com/users/ValWood/repos","events_url":"https://api.github.com/users/ValWood/events{/privacy}","received_events_url":"https://api.github.com/users/ValWood/received_events","type":"User","site_admin":false},"created_at":"2018-03-28T07:18:13Z","updated_at":"2018-03-28T07:18:13Z","author_association":"OWNER","body":"I was looking here. I shift reloaded lots. Am I looking in the wrong place?\r\n\r\nhttp://pombase-dev.bioinformatics.nz/jbrowse/?loc=III%3A713804..733804&tracks=PomBase%20forward%20strand%20features%2CDNA%2CPomBase%20reverse%20strand%20features&highlight=\r\n\r\n\r\n"}}
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