{"action":"closed","issue":{"url":"https://api.github.com/repos/djhn75/RNAEditor/issues/15","repository_url":"https://api.github.com/repos/djhn75/RNAEditor","labels_url":"https://api.github.com/repos/djhn75/RNAEditor/issues/15/labels{/name}","comments_url":"https://api.github.com/repos/djhn75/RNAEditor/issues/15/comments","events_url":"https://api.github.com/repos/djhn75/RNAEditor/issues/15/events","html_url":"https://github.com/djhn75/RNAEditor/issues/15","id":253258361,"number":15,"title":"Name conflict in CallEditingSites.py","user":{"login":"thestarocean","id":26957181,"avatar_url":"https://avatars1.githubusercontent.com/u/26957181?v=4","gravatar_id":"","url":"https://api.github.com/users/thestarocean","html_url":"https://github.com/thestarocean","followers_url":"https://api.github.com/users/thestarocean/followers","following_url":"https://api.github.com/users/thestarocean/following{/other_user}","gists_url":"https://api.github.com/users/thestarocean/gists{/gist_id}","starred_url":"https://api.github.com/users/thestarocean/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/thestarocean/subscriptions","organizations_url":"https://api.github.com/users/thestarocean/orgs","repos_url":"https://api.github.com/users/thestarocean/repos","events_url":"https://api.github.com/users/thestarocean/events{/privacy}","received_events_url":"https://api.github.com/users/thestarocean/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2017-08-28T08:16:36Z","updated_at":"2018-05-03T06:44:38Z","closed_at":"2018-05-03T06:44:38Z","author_association":"NONE","body":"Your RNAeditor provides a simple and quick method for identifying the RNA editing sites in RNA-seq data. However, when I reviewed the result, it occurred to me that non-alu vcf file is missing. So I read the code in CallEditingSites.py and found out that in line 469, line 472 and line 479, the output file for non-alu variants, non-alu variant clusters and alu variant clusters are the same. (\".editingIsland.bed\"). I think the first output file should be \".editingSites.nonalu.vcf\" and the second should be \".editingIsland.nonalu.bed\" and the final one should be \".editingIsland.alu.bed\".\r\nIs this the reason for the missing non-alu vcf file? Or the RNAeditor only give vcf file for alu editing sites?"}}
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