{"action":"created","issue":{"url":"https://api.github.com/repos/NixOS/nixpkgs/issues/34532","repository_url":"https://api.github.com/repos/NixOS/nixpkgs","labels_url":"https://api.github.com/repos/NixOS/nixpkgs/issues/34532/labels{/name}","comments_url":"https://api.github.com/repos/NixOS/nixpkgs/issues/34532/comments","events_url":"https://api.github.com/repos/NixOS/nixpkgs/issues/34532/events","html_url":"https://github.com/NixOS/nixpkgs/pull/34532","id":293941654,"number":34532,"title":"pysam: init at 0.13","user":{"login":"unode","id":122319,"avatar_url":"https://avatars3.githubusercontent.com/u/122319?v=4","gravatar_id":"","url":"https://api.github.com/users/unode","html_url":"https://github.com/unode","followers_url":"https://api.github.com/users/unode/followers","following_url":"https://api.github.com/users/unode/following{/other_user}","gists_url":"https://api.github.com/users/unode/gists{/gist_id}","starred_url":"https://api.github.com/users/unode/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/unode/subscriptions","organizations_url":"https://api.github.com/users/unode/orgs","repos_url":"https://api.github.com/users/unode/repos","events_url":"https://api.github.com/users/unode/events{/privacy}","received_events_url":"https://api.github.com/users/unode/received_events","type":"User","site_admin":false},"labels":[{"id":731735222,"url":"https://api.github.com/repos/NixOS/nixpkgs/labels/10.rebuild-darwin:%201-10","name":"10.rebuild-darwin: 1-10","color":"eeffee","default":false},{"id":731733923,"url":"https://api.github.com/repos/NixOS/nixpkgs/labels/10.rebuild-linux:%201-10","name":"10.rebuild-linux: 1-10","color":"eeffee","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":9,"created_at":"2018-02-02T16:16:37Z","updated_at":"2018-02-02T21:36:20Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/NixOS/nixpkgs/pulls/34532","html_url":"https://github.com/NixOS/nixpkgs/pull/34532","diff_url":"https://github.com/NixOS/nixpkgs/pull/34532.diff","patch_url":"https://github.com/NixOS/nixpkgs/pull/34532.patch"},"body":"A python library to interact with SAM/BAM/CRAM files\r\n\r\n###### Things done\r\n\r\n<!-- Please check what applies. Note that these are not hard requirements but merely serve as information for reviewers. -->\r\n\r\n- [ ] Tested using sandboxing ([nix.useSandbox](http://nixos.org/nixos/manual/options.html#opt-nix.useSandbox) on NixOS, or option `build-use-sandbox` in [`nix.conf`](http://nixos.org/nix/manual/#sec-conf-file) on non-NixOS)\r\n- Built on platform(s)\r\n   - [ ] NixOS\r\n   - [ ] macOS\r\n   - [x] other Linux distributions\r\n- [ ] Tested via one or more NixOS test(s) if existing and applicable for the change (look inside [nixos/tests](https://github.com/NixOS/nixpkgs/blob/master/nixos/tests))\r\n- [ ] Tested compilation of all pkgs that depend on this change using `nix-shell -p nox --run \"nox-review wip\"`\r\n- [x] Tested execution of all binary files (usually in `./result/bin/`)\r\n- [x] Fits [CONTRIBUTING.md](https://github.com/NixOS/nixpkgs/blob/master/.github/CONTRIBUTING.md).\r\n\r\n---\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/NixOS/nixpkgs/issues/comments/362714778","html_url":"https://github.com/NixOS/nixpkgs/pull/34532#issuecomment-362714778","issue_url":"https://api.github.com/repos/NixOS/nixpkgs/issues/34532","id":362714778,"user":{"login":"GrahamcOfBorg","id":25447658,"avatar_url":"https://avatars2.githubusercontent.com/u/25447658?v=4","gravatar_id":"","url":"https://api.github.com/users/GrahamcOfBorg","html_url":"https://github.com/GrahamcOfBorg","followers_url":"https://api.github.com/users/GrahamcOfBorg/followers","following_url":"https://api.github.com/users/GrahamcOfBorg/following{/other_user}","gists_url":"https://api.github.com/users/GrahamcOfBorg/gists{/gist_id}","starred_url":"https://api.github.com/users/GrahamcOfBorg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/GrahamcOfBorg/subscriptions","organizations_url":"https://api.github.com/users/GrahamcOfBorg/orgs","repos_url":"https://api.github.com/users/GrahamcOfBorg/repos","events_url":"https://api.github.com/users/GrahamcOfBorg/events{/privacy}","received_events_url":"https://api.github.com/users/GrahamcOfBorg/received_events","type":"User","site_admin":false},"created_at":"2018-02-02T21:36:20Z","updated_at":"2018-02-02T21:36:20Z","author_association":"NONE","body":"Failure on aarch64-linux [(full log)](https://logs.nix.gsc.io/?key=nixos/nixpkgs.34532&attempt_id=none)\n\n<details><summary>Partial log (click to expand)</summary><p>\n\n```\nshrinking /nix/store/a8k2zbm86lmx5cz2mi29mwsr3bm17ymd-python3.6-pysam-0.13/lib/python3.6/site-packages/pysam/libcutils.cpython-36m-aarch64-linux-gnu.so\nshrinking /nix/store/a8k2zbm86lmx5cz2mi29mwsr3bm17ymd-python3.6-pysam-0.13/lib/python3.6/site-packages/pysam/libcvcf.cpython-36m-aarch64-linux-gnu.so\nstrip is /nix/store/jwz859pxqj7sl2dbwvmxkx68jp774izb-binutils-2.28.1/bin/strip\nstripping (with command strip and flags -S) in /nix/store/a8k2zbm86lmx5cz2mi29mwsr3bm17ymd-python3.6-pysam-0.13/lib\npatching script interpreter paths in /nix/store/a8k2zbm86lmx5cz2mi29mwsr3bm17ymd-python3.6-pysam-0.13\nchecking for references to /build in /nix/store/a8k2zbm86lmx5cz2mi29mwsr3bm17ymd-python3.6-pysam-0.13...\nrunning install tests\n/nix/store/aci5ir60cxnl692vx652y4sawm592igr-stdenv/setup: line 1222: py.test: command not found\nbuilder for '/nix/store/0q8qlbn11bk7vjpvka1022yyi230y957-python3.6-pysam-0.13.drv' failed with exit code 127\nerror: build of '/nix/store/0q8qlbn11bk7vjpvka1022yyi230y957-python3.6-pysam-0.13.drv', '/nix/store/0z51frnycwz59wjvkid454vgcrbdsk08-python2.7-pysam-0.13.drv' failed\n```\n</p></details>\n\n"}}
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