{"push_id":2813028332,"size":106,"distinct_size":106,"ref":"refs/heads/wrap-unwrap","head":"8c8dd7ce6e6950072389feecfd9ee40b1f732fd9","before":"4a387b6ce6f2cfaaf4fd4aa9b4a5ec59cebb62eb","commits":[{"sha":"69be6dc5e9125a311b56566ae182fb8b3d02103e","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"The windows size tau + t was already accounted for in _getMeanOnePoint upstream","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/69be6dc5e9125a311b56566ae182fb8b3d02103e"},{"sha":"3e65d43a320ba8c0e64735d76c08129ff3e4d417","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Use reverse search for number of survivors. Stop search if no survivors.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/3e65d43a320ba8c0e64735d76c08129ff3e4d417"},{"sha":"40991870390115cad6d896398c542a226c493861","author":{"name":"p-j-smith","email":"98303196f3be00e0cad5926db431995e18108e6a@kcl.ac.uk"},"message":"Optimised calculation of survival probability.\n\nAtom selections at each frame are now stored as sets rather than lists,\nso determining the intersection of selections is faster.\n\nSurvival probability is now calculated by a single function.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/40991870390115cad6d896398c542a226c493861"},{"sha":"b5e1ab233b5b83dd71ef82e8c712cf4bc87a0fba","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Latest version by Paul to remove the unnecessary functions","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/b5e1ab233b5b83dd71ef82e8c712cf4bc87a0fba"},{"sha":"967a569665ae116d81f0eae46c3e68dc4bcd512f","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Syntax errors","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/967a569665ae116d81f0eae46c3e68dc4bcd512f"},{"sha":"ad4b44be6c62f311c46bcca304eeedf52f750a17","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Changed expected output from 0.0 to Nan.\n\nThe survival probability is a measure of how likely a selected molecule\nis to remain within a specified region over a period of time. If at t0\nthe selected molecule is not in the specified region, no survival\nprobability can be calculated.\n\nFor example, consider that we would like to calculate the survival\nprobability of an ion at an interface. If the ion never approaches the\ninterface, the previous test would return a survival probability of 0,\nwhich suggests that the ion comes to the interface but leaves\nimmediately. However, as the ion was never at the interface, no\nsurvival probability can be calculated from this data.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/ad4b44be6c62f311c46bcca304eeedf52f750a17"},{"sha":"9cf39289c160cabbe6167b5980a97194d4e22fbb","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Minor changes:\n-return the list rather than require the user to access the internal list\n-use tau_max variable name which is consistent with the equation, in contrast to dtmax","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/9cf39289c160cabbe6167b5980a97194d4e22fbb"},{"sha":"afb48ac0132064ed37aee7ffa9d7984d975aca97","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Switch the nested loops. Looping only once over the entire trajectory and more times over tau. This will lead to faster code (local memory/cache optimisation). Additionally, opens the door for combining multiple taus together.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/afb48ac0132064ed37aee7ffa9d7984d975aca97"},{"sha":"d71ed58ae41e6965db5659ca3d4f1f24021481f2","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"No need to check t+tau for any tau if at t it is empty.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/d71ed58ae41e6965db5659ca3d4f1f24021481f2"},{"sha":"b711cb2ab8bc8877f02a25ef5b368fd5f7c7f20f","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"If there is no atom at t, this does not need to be checked for each t+tau.\n\nRefactoring.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/b711cb2ab8bc8877f02a25ef5b368fd5f7c7f20f"},{"sha":"8eb1854840a5bdd43da877f7f7490daf8273a03a","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Should the first data point be always 1? In that case first tau = 0. Or should the first data point reflect the first tau which is non-zero and therefore the first change is quantified? I believe it is the latter. This breaks the current tests which, for example, by asking for 4 datapoints, always get the first datapoint for tau=0 that is 1.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/8eb1854840a5bdd43da877f7f7490daf8273a03a"},{"sha":"42704d78cef5492f1a3524c85301cae86774affd","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Using the set.intersection argument unpacking: easier to read, neater\ncode and no performance drawbacks.\n\nTests: the user should not be forced to rely on the internal data\nstructures .timeseries. Returning the results with the function run().","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/42704d78cef5492f1a3524c85301cae86774affd"},{"sha":"9370e8f81858e2a4b8d591a0d5c0b4ad0fa23c81","author":{"name":"p-j-smith","email":"98303196f3be00e0cad5926db431995e18108e6a@kcl.ac.uk"},"message":"Returning the survival probability and the values of tau as\nnumpy arrays.\n\nChanged the name of tau_timeseries to sp_timeseries as it is a more\naccurate descriptor.\n\nRemoved some of the +/- 1 in indices to improve readability.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/9370e8f81858e2a4b8d591a0d5c0b4ad0fa23c81"},{"sha":"87b6d343c6f83babc7f18a50e120f8939a5bd282","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Adjusting the tests because the return function gives back taus too.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/87b6d343c6f83babc7f18a50e120f8939a5bd282"},{"sha":"3655647f64bd3b4737baf9249bd257615b549726","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Moving the checks to the constructor.\n\nSaving the extracted data for the user to be able to dig deeper, if\nnecessary.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/3655647f64bd3b4737baf9249bd257615b549726"},{"sha":"c89a690e1b5f084a57d59badce107446d272f3b9","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"verbose mode added + better documentation.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/c89a690e1b5f084a57d59badce107446d272f3b9"},{"sha":"ea1c744cf8f1210d1582a98cfd0c0149bb03d0e7","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"The tf is inclusive.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/ea1c744cf8f1210d1582a98cfd0c0149bb03d0e7"},{"sha":"683f1cbfffad7f38e40ac5fecdac680f2045086b","author":{"name":"p-j-smith","email":"98303196f3be00e0cad5926db431995e18108e6a@kcl.ac.uk"},"message":"Storing a set of atom ids at each timestep, rather than a set containing\nan atom group, to reduce the memory load.\n\nUpdated the docstring.","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/683f1cbfffad7f38e40ac5fecdac680f2045086b"},{"sha":"ebd1b33b568cc93fb82191095a16a33539a5413f","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"tiny bug","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/ebd1b33b568cc93fb82191095a16a33539a5413f"},{"sha":"53abc628318869da3556b6f58422feb1e77322e2","author":{"name":"mat","email":"073e9e258db0e21b71c44ff3db3fcb32199937be@gmail.com"},"message":"Check if all tau == 1 when the same atom IDs are returned at each frame","distinct":true,"url":"https://api.github.com/repos/davidercruz/mdanalysis/commits/53abc628318869da3556b6f58422feb1e77322e2"}]}
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