{"action":"created","issue":{"url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/issues/24","repository_url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template","labels_url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/issues/24/labels{/name}","comments_url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/issues/24/comments","events_url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/issues/24/events","html_url":"https://github.com/tobiasraabe/cookiecutter-research-template/pull/24","id":377533017,"node_id":"MDExOlB1bGxSZXF1ZXN0MjI4NDUzMzM1","number":24,"title":"Scheduled weekly dependency update for week 44","user":{"login":"pyup-bot","id":16239342,"node_id":"MDQ6VXNlcjE2MjM5MzQy","avatar_url":"https://avatars0.githubusercontent.com/u/16239342?v=4","gravatar_id":"","url":"https://api.github.com/users/pyup-bot","html_url":"https://github.com/pyup-bot","followers_url":"https://api.github.com/users/pyup-bot/followers","following_url":"https://api.github.com/users/pyup-bot/following{/other_user}","gists_url":"https://api.github.com/users/pyup-bot/gists{/gist_id}","starred_url":"https://api.github.com/users/pyup-bot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pyup-bot/subscriptions","organizations_url":"https://api.github.com/users/pyup-bot/orgs","repos_url":"https://api.github.com/users/pyup-bot/repos","events_url":"https://api.github.com/users/pyup-bot/events{/privacy}","received_events_url":"https://api.github.com/users/pyup-bot/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-11-05T18:48:18Z","updated_at":"2018-11-12T18:51:21Z","closed_at":null,"author_association":"CONTRIBUTOR","pull_request":{"url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/pulls/24","html_url":"https://github.com/tobiasraabe/cookiecutter-research-template/pull/24","diff_url":"https://github.com/tobiasraabe/cookiecutter-research-template/pull/24.diff","patch_url":"https://github.com/tobiasraabe/cookiecutter-research-template/pull/24.patch"},"body":"\n\n\n\n\n### Update [flake8](https://pypi.org/project/flake8) from **3.5.0** to **3.6.0**.\n\n\n<details>\n  <summary>Changelog</summary>\n  \n  \n   ### 3.6.0\n   ```\n   -------------------\n\nYou can view the `3.6.0 milestone`_ on GitLab for more details.\n\nNew Dependency Information\n~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n- pycodestyle has been updated to &gt;= 2.4.0, &lt; 2.5.0 (See also `GitLab381`_,\n  `GitLab415`_, `GitLab!212`_, `GitLab!230`_, `GitLab!231`_)\n\n- Pyflakes has been updated to &gt;= 2.0.0, &lt; 2.1.0 (See also `GitLab422`_,\n  `GitLab!239`_)\n\n- flake8 requires python 2.x &gt;= 2.7 or python 3.x &gt;= 3.4 (See also\n  `GitLab!225`_)\n\nFeatures\n~~~~~~~~\n\n- Add ``paths`` to allow local plugins to exist outside of ``sys.path`` (See\n  also `GitLab379`_, `GitLab!211`_)\n\n- Copy ``setup.cfg`` files to the temporary git hook execution directory (See\n  also `GitLab!215`_)\n\n- Only skip a file if `` flake8: noqa`` is on a line by itself (See also\n  `GitLab453`_, `GitLab!219`_)\n\n- Provide a better user experience for broken plugins (See also `GitLab!221`_)\n\n- Report ``E902`` when a file passed on the command line does not exist (See\n  also `GitLab405`_, `GitLab!227`_)\n\n- Add ``--extend-ignore`` for extending the default ``ignore`` instead of\n  overriding it (See also `GitLab!233`_)\n\nBugs Fixed\n~~~~~~~~~~\n\n- Respect a formatter&#39;s newline setting when printing (See also `GitLab!222`_)\n\n- Fix leaking of processes in the legacy api (See also `GitLab410`_,\n  `GitLab!228`_)\n\n- Fix a ``SyntaxWarning`` for an invalid escape sequence (See also\n  `GitLab!244`_)\n\n- Fix ``DeprecationWarning`` due to import of ``abc`` classes from the\n  ``collections`` module (See also `GitLab!249`_)\n\n- Defer ``setuptools`` import to improve flake8 startup time (See also\n  `GitLab365`_, `GitLab!250`_)\n\n- Fix inconsistent line endings in ``FileProcessor.lines`` when running under\n  python 3.x (See also `GitLab457`_, `GitLab!255`_)\n\n\n.. all links\n.. _3.6.0 milestone:\n    https://gitlab.com/pycqa/flake8/milestones/21\n\n.. issue links\n.. _GitLab365:\n    https://gitlab.com/pycqa/flake8/issues/365\n.. _GitLab379:\n    https://gitlab.com/pycqa/flake8/issues/379\n.. _GitLab381:\n    https://gitlab.com/pycqa/flake8/issues/381\n.. _GitLab405:\n    https://gitlab.com/pycqa/flake8/issues/405\n.. _GitLab410:\n    https://gitlab.com/pycqa/flake8/issues/410\n.. _GitLab415:\n    https://gitlab.com/pycqa/flake8/issues/415\n.. _GitLab422:\n    https://gitlab.com/pycqa/flake8/issues/422\n.. _GitLab453:\n    https://gitlab.com/pycqa/flake8/issues/453\n.. _GitLab457:\n    https://gitlab.com/pycqa/flake8/issues/457\n\n.. merge request links\n.. _GitLab!211:\n    https://gitlab.com/pycqa/flake8/merge_requests/211\n.. _GitLab!212:\n    https://gitlab.com/pycqa/flake8/merge_requests/212\n.. _GitLab!215:\n    https://gitlab.com/pycqa/flake8/merge_requests/215\n.. _GitLab!219:\n    https://gitlab.com/pycqa/flake8/merge_requests/219\n.. _GitLab!221:\n    https://gitlab.com/pycqa/flake8/merge_requests/221\n.. _GitLab!222:\n    https://gitlab.com/pycqa/flake8/merge_requests/222\n.. _GitLab!225:\n    https://gitlab.com/pycqa/flake8/merge_requests/225\n.. _GitLab!227:\n    https://gitlab.com/pycqa/flake8/merge_requests/227\n.. _GitLab!228:\n    https://gitlab.com/pycqa/flake8/merge_requests/228\n.. _GitLab!230:\n    https://gitlab.com/pycqa/flake8/merge_requests/230\n.. _GitLab!231:\n    https://gitlab.com/pycqa/flake8/merge_requests/231\n.. _GitLab!233:\n    https://gitlab.com/pycqa/flake8/merge_requests/233\n.. _GitLab!239:\n    https://gitlab.com/pycqa/flake8/merge_requests/239\n.. _GitLab!244:\n    https://gitlab.com/pycqa/flake8/merge_requests/244\n.. _GitLab!249:\n    https://gitlab.com/pycqa/flake8/merge_requests/249\n.. _GitLab!250:\n    https://gitlab.com/pycqa/flake8/merge_requests/250\n.. _GitLab!255:\n    https://gitlab.com/pycqa/flake8/merge_requests/255\n   ```\n   \n  \n</details>\n\n\n \n\n<details>\n  <summary>Links</summary>\n  \n  - PyPI: https://pypi.org/project/flake8\n  - Changelog: https://pyup.io/changelogs/flake8/\n  - Repo: https://gitlab.com/pycqa/flake8\n</details>\n\n\n\n\n\n### Update [pytest](https://pypi.org/project/pytest) from **3.9.1** to **3.10.0**.\n\n\n<details>\n  <summary>Changelog</summary>\n  \n  \n   ### 3.10.0\n   ```\n   ==========================\n\nFeatures\n--------\n\n- `2619 &lt;https://github.com/pytest-dev/pytest/issues/2619&gt;`_: Resume capturing output after ``continue`` with ``__import__(&quot;pdb&quot;).set_trace()``.\n\n  This also adds a new ``pytest_leave_pdb`` hook, and passes in ``pdb`` to the\n  existing ``pytest_enter_pdb`` hook.\n\n\n- `4147 &lt;https://github.com/pytest-dev/pytest/issues/4147&gt;`_: Add ``-sw``, ``--stepwise`` as an alternative to ``--lf -x`` for stopping at the first failure, but starting the next test invocation from that test.  See `the documentation &lt;https://docs.pytest.org/en/latest/cache.htmlstepwise&gt;`__ for more info.\n\n\n- `4188 &lt;https://github.com/pytest-dev/pytest/issues/4188&gt;`_: Make ``--color`` emit colorful dots when not running in verbose mode. Earlier, it would only colorize the test-by-test output if ``--verbose`` was also passed.\n\n\n- `4225 &lt;https://github.com/pytest-dev/pytest/issues/4225&gt;`_: Improve performance with collection reporting in non-quiet mode with terminals.\n\n  The &quot;collecting …&quot; message is only printed/updated every 0.5s.\n\n\n\nBug Fixes\n---------\n\n- `2701 &lt;https://github.com/pytest-dev/pytest/issues/2701&gt;`_: Fix false ``RemovedInPytest4Warning: usage of Session... is deprecated, please use pytest`` warnings.\n\n\n- `4046 &lt;https://github.com/pytest-dev/pytest/issues/4046&gt;`_: Fix problems with running tests in package ``__init__.py`` files.\n\n\n- `4260 &lt;https://github.com/pytest-dev/pytest/issues/4260&gt;`_: Swallow warnings during anonymous compilation of source.\n\n\n- `4262 &lt;https://github.com/pytest-dev/pytest/issues/4262&gt;`_: Fix access denied error when deleting stale directories created by ``tmpdir`` / ``tmp_path``.\n\n\n- `611 &lt;https://github.com/pytest-dev/pytest/issues/611&gt;`_: Naming a fixture ``request`` will now raise a warning: the ``request`` fixture is internal and\n  should not be overwritten as it will lead to internal errors.\n\n\n\nImproved Documentation\n----------------------\n\n- `4255 &lt;https://github.com/pytest-dev/pytest/issues/4255&gt;`_: Added missing documentation about the fact that module names passed to filter warnings are not regex-escaped.\n\n\n\nTrivial/Internal Changes\n------------------------\n\n- `4272 &lt;https://github.com/pytest-dev/pytest/issues/4272&gt;`_: Display cachedir also in non-verbose mode if non-default.\n\n\n- `4277 &lt;https://github.com/pytest-dev/pytest/issues/4277&gt;`_: pdb: improve message about output capturing with ``set_trace``.\n\n  Do not display &quot;IO-capturing turned off/on&quot; when ``-s`` is used to avoid\n  confusion.\n\n\n- `4279 &lt;https://github.com/pytest-dev/pytest/issues/4279&gt;`_: Improve message and stack level of warnings issued by ``monkeypatch.setenv`` when the value of the environment variable is not a ``str``.\n   ```\n   \n  \n  \n   ### 3.9.3\n   ```\n   =========================\n\nBug Fixes\n---------\n\n- `4174 &lt;https://github.com/pytest-dev/pytest/issues/4174&gt;`_: Fix &quot;ValueError: Plugin already registered&quot; with conftest plugins via symlink.\n\n\n- `4181 &lt;https://github.com/pytest-dev/pytest/issues/4181&gt;`_: Handle race condition between creation and deletion of temporary folders.\n\n\n- `4221 &lt;https://github.com/pytest-dev/pytest/issues/4221&gt;`_: Fix bug where the warning summary at the end of the test session was not showing the test where the warning was originated.\n\n\n- `4243 &lt;https://github.com/pytest-dev/pytest/issues/4243&gt;`_: Fix regression when ``stacklevel`` for warnings was passed as positional argument on python2.\n\n\n\nImproved Documentation\n----------------------\n\n- `3851 &lt;https://github.com/pytest-dev/pytest/issues/3851&gt;`_: Add reference to ``empty_parameter_set_mark`` ini option in documentation of ``pytest.mark.parametrize``\n\n\n\nTrivial/Internal Changes\n------------------------\n\n- `4028 &lt;https://github.com/pytest-dev/pytest/issues/4028&gt;`_: Revert patching of ``sys.breakpointhook`` since it appears to do nothing.\n\n\n- `4233 &lt;https://github.com/pytest-dev/pytest/issues/4233&gt;`_: Apply an import sorter (``reorder-python-imports``) to the codebase.\n\n\n- `4248 &lt;https://github.com/pytest-dev/pytest/issues/4248&gt;`_: Remove use of unnecessary compat shim, six.binary_type\n   ```\n   \n  \n  \n   ### 3.9.2\n   ```\n   =========================\n\nBug Fixes\n---------\n\n- `2909 &lt;https://github.com/pytest-dev/pytest/issues/2909&gt;`_: Improve error message when a recursive dependency between fixtures is detected.\n\n\n- `3340 &lt;https://github.com/pytest-dev/pytest/issues/3340&gt;`_: Fix logging messages not shown in hooks ``pytest_sessionstart()`` and ``pytest_sessionfinish()``.\n\n\n- `3533 &lt;https://github.com/pytest-dev/pytest/issues/3533&gt;`_: Fix unescaped XML raw objects in JUnit report for skipped tests\n\n\n- `3691 &lt;https://github.com/pytest-dev/pytest/issues/3691&gt;`_: Python 2: safely format warning message about passing unicode strings to ``warnings.warn``, which may cause\n  surprising ``MemoryError`` exception when monkey patching ``warnings.warn`` itself.\n\n\n- `4026 &lt;https://github.com/pytest-dev/pytest/issues/4026&gt;`_: Improve error message when it is not possible to determine a function&#39;s signature.\n\n\n- `4177 &lt;https://github.com/pytest-dev/pytest/issues/4177&gt;`_: Pin ``setuptools&gt;=40.0`` to support ``py_modules`` in ``setup.cfg``\n\n\n- `4179 &lt;https://github.com/pytest-dev/pytest/issues/4179&gt;`_: Restore the tmpdir behaviour of symlinking the current test run.\n\n\n- `4192 &lt;https://github.com/pytest-dev/pytest/issues/4192&gt;`_: Fix filename reported by ``warnings.warn`` when using ``recwarn`` under python2.\n   ```\n   \n  \n</details>\n\n\n \n\n<details>\n  <summary>Links</summary>\n  \n  - PyPI: https://pypi.org/project/pytest\n  - Changelog: https://pyup.io/changelogs/pytest/\n  - Homepage: https://docs.pytest.org/en/latest/\n</details>\n\n\n\n\n\n### Update [tox](https://pypi.org/project/tox) from **3.5.2** to **3.5.3**.\n\n\n*The bot wasn't able to find a changelog for this release. [Got an idea?](https://github.com/pyupio/changelogs/issues/new)*\n\n<details>\n  <summary>Links</summary>\n  \n  - PyPI: https://pypi.org/project/tox\n  - Docs: https://tox.readthedocs.org/\n</details>\n\n\n\n\n\n### Update [matplotlib](https://pypi.org/project/matplotlib) from **3.0.0** to **3.0.1**.\n\n\n*The bot wasn't able to find a changelog for this release. [Got an idea?](https://github.com/pyupio/changelogs/issues/new)*\n\n<details>\n  <summary>Links</summary>\n  \n  - PyPI: https://pypi.org/project/matplotlib\n  - Changelog: https://pyup.io/changelogs/matplotlib/\n  - Homepage: http://matplotlib.org\n</details>\n\n\n\n\n\n"},"comment":{"url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/issues/comments/437989945","html_url":"https://github.com/tobiasraabe/cookiecutter-research-template/pull/24#issuecomment-437989945","issue_url":"https://api.github.com/repos/tobiasraabe/cookiecutter-research-template/issues/24","id":437989945,"node_id":"MDEyOklzc3VlQ29tbWVudDQzNzk4OTk0NQ==","user":{"login":"pyup-bot","id":16239342,"node_id":"MDQ6VXNlcjE2MjM5MzQy","avatar_url":"https://avatars0.githubusercontent.com/u/16239342?v=4","gravatar_id":"","url":"https://api.github.com/users/pyup-bot","html_url":"https://github.com/pyup-bot","followers_url":"https://api.github.com/users/pyup-bot/followers","following_url":"https://api.github.com/users/pyup-bot/following{/other_user}","gists_url":"https://api.github.com/users/pyup-bot/gists{/gist_id}","starred_url":"https://api.github.com/users/pyup-bot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pyup-bot/subscriptions","organizations_url":"https://api.github.com/users/pyup-bot/orgs","repos_url":"https://api.github.com/users/pyup-bot/repos","events_url":"https://api.github.com/users/pyup-bot/events{/privacy}","received_events_url":"https://api.github.com/users/pyup-bot/received_events","type":"User","site_admin":false},"created_at":"2018-11-12T18:51:21Z","updated_at":"2018-11-12T18:51:21Z","author_association":"CONTRIBUTOR","body":"Closing this in favor of #25"}}
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