{"action":"created","issue":{"url":"https://api.github.com/repos/StochSS/stochss/issues/671","repository_url":"https://api.github.com/repos/StochSS/stochss","labels_url":"https://api.github.com/repos/StochSS/stochss/issues/671/labels{/name}","comments_url":"https://api.github.com/repos/StochSS/stochss/issues/671/comments","events_url":"https://api.github.com/repos/StochSS/stochss/issues/671/events","html_url":"https://github.com/StochSS/stochss/issues/671","id":298028134,"number":671,"title":"Bug importing and visualizing 2D meshes","user":{"login":"briandrawert","id":1413538,"avatar_url":"https://avatars1.githubusercontent.com/u/1413538?v=4","gravatar_id":"","url":"https://api.github.com/users/briandrawert","html_url":"https://github.com/briandrawert","followers_url":"https://api.github.com/users/briandrawert/followers","following_url":"https://api.github.com/users/briandrawert/following{/other_user}","gists_url":"https://api.github.com/users/briandrawert/gists{/gist_id}","starred_url":"https://api.github.com/users/briandrawert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandrawert/subscriptions","organizations_url":"https://api.github.com/users/briandrawert/orgs","repos_url":"https://api.github.com/users/briandrawert/repos","events_url":"https://api.github.com/users/briandrawert/events{/privacy}","received_events_url":"https://api.github.com/users/briandrawert/received_events","type":"User","site_admin":false},"labels":[{"id":25802553,"url":"https://api.github.com/repos/StochSS/stochss/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"open","locked":false,"assignee":{"login":"briandrawert","id":1413538,"avatar_url":"https://avatars1.githubusercontent.com/u/1413538?v=4","gravatar_id":"","url":"https://api.github.com/users/briandrawert","html_url":"https://github.com/briandrawert","followers_url":"https://api.github.com/users/briandrawert/followers","following_url":"https://api.github.com/users/briandrawert/following{/other_user}","gists_url":"https://api.github.com/users/briandrawert/gists{/gist_id}","starred_url":"https://api.github.com/users/briandrawert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandrawert/subscriptions","organizations_url":"https://api.github.com/users/briandrawert/orgs","repos_url":"https://api.github.com/users/briandrawert/repos","events_url":"https://api.github.com/users/briandrawert/events{/privacy}","received_events_url":"https://api.github.com/users/briandrawert/received_events","type":"User","site_admin":false},"assignees":[{"login":"briandrawert","id":1413538,"avatar_url":"https://avatars1.githubusercontent.com/u/1413538?v=4","gravatar_id":"","url":"https://api.github.com/users/briandrawert","html_url":"https://github.com/briandrawert","followers_url":"https://api.github.com/users/briandrawert/followers","following_url":"https://api.github.com/users/briandrawert/following{/other_user}","gists_url":"https://api.github.com/users/briandrawert/gists{/gist_id}","starred_url":"https://api.github.com/users/briandrawert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandrawert/subscriptions","organizations_url":"https://api.github.com/users/briandrawert/orgs","repos_url":"https://api.github.com/users/briandrawert/repos","events_url":"https://api.github.com/users/briandrawert/events{/privacy}","received_events_url":"https://api.github.com/users/briandrawert/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-02-17T19:05:13Z","updated_at":"2018-02-18T16:07:00Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"2 Errors:\r\n\r\n(1) 2D mesh made with Gmsh does not import correctly.  It causes an exception in the error log, and a '500' error on the model page.  This error prevents the rest of the javascript on the model page from working.\r\n\r\nI was able to get the mesh to import correctly by editing the XML to change:  `<mesh celltype=\"triangle\" dim=\"2\">` to `<mesh celltype=\"triangle\" dim=\"3\"> `\r\n\r\n\r\n(2) When visualizing this mesh, I got an segmentation fault:\r\n\r\n```[0]PETSC ERROR: ------------------------------------------------------------------------\r\n[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range\r\n[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger\r\n[0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors\r\n[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and run\r\n[0]PETSC ERROR: to get more information on the crash.\r\n--------------------------------------------------------------------------\r\nMPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD\r\nwith errorcode 59.\r\n\r\nNOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.\r\nYou may or may not see output from other processes, depending on\r\nexactly when Open MPI kills them.\r\n--------------------------------------------------------------------------\r\nINFO     2018-02-17 17:29:25,950 module.py:643] default: \"GET /spatial?reqType=getMeshData&id=5891733057437696&data=%7B%22trajectory%22%3A0%2C%22timeIdx%22%3A0%7D HTTP/1.1\" 500 13733\r\n```"},"comment":{"url":"https://api.github.com/repos/StochSS/stochss/issues/comments/366526427","html_url":"https://github.com/StochSS/stochss/issues/671#issuecomment-366526427","issue_url":"https://api.github.com/repos/StochSS/stochss/issues/671","id":366526427,"user":{"login":"briandrawert","id":1413538,"avatar_url":"https://avatars1.githubusercontent.com/u/1413538?v=4","gravatar_id":"","url":"https://api.github.com/users/briandrawert","html_url":"https://github.com/briandrawert","followers_url":"https://api.github.com/users/briandrawert/followers","following_url":"https://api.github.com/users/briandrawert/following{/other_user}","gists_url":"https://api.github.com/users/briandrawert/gists{/gist_id}","starred_url":"https://api.github.com/users/briandrawert/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/briandrawert/subscriptions","organizations_url":"https://api.github.com/users/briandrawert/orgs","repos_url":"https://api.github.com/users/briandrawert/repos","events_url":"https://api.github.com/users/briandrawert/events{/privacy}","received_events_url":"https://api.github.com/users/briandrawert/received_events","type":"User","site_admin":false},"created_at":"2018-02-18T16:07:00Z","updated_at":"2018-02-18T16:07:00Z","author_association":"CONTRIBUTOR","body":"[Archive.zip](https://github.com/StochSS/stochss/files/1734857/Archive.zip)\r\n"}}
{"actor":{"display_login":"briandrawert"}}