{"action":"opened","issue":{"url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/236","repository_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq","labels_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/236/labels{/name}","comments_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/236/comments","events_url":"https://api.github.com/repos/SciLifeLab/NGI-RNAseq/issues/236/events","html_url":"https://github.com/SciLifeLab/NGI-RNAseq/issues/236","id":334411000,"node_id":"MDU6SXNzdWUzMzQ0MTEwMDA=","number":236,"title":"genome configuration file","user":{"login":"PycnopodiaD","id":6533466,"node_id":"MDQ6VXNlcjY1MzM0NjY=","avatar_url":"https://avatars0.githubusercontent.com/u/6533466?v=4","gravatar_id":"","url":"https://api.github.com/users/PycnopodiaD","html_url":"https://github.com/PycnopodiaD","followers_url":"https://api.github.com/users/PycnopodiaD/followers","following_url":"https://api.github.com/users/PycnopodiaD/following{/other_user}","gists_url":"https://api.github.com/users/PycnopodiaD/gists{/gist_id}","starred_url":"https://api.github.com/users/PycnopodiaD/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/PycnopodiaD/subscriptions","organizations_url":"https://api.github.com/users/PycnopodiaD/orgs","repos_url":"https://api.github.com/users/PycnopodiaD/repos","events_url":"https://api.github.com/users/PycnopodiaD/events{/privacy}","received_events_url":"https://api.github.com/users/PycnopodiaD/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-06-21T09:28:46Z","updated_at":"2018-06-21T09:28:46Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nThis is probably not the best question, but I really cannot find the documentation concerning the  ' configuration setup to save sets of reference files for your own use, even if they are not part of the iGenomes resource', which is supposed to be found somewhere here;\r\nhttps://www.nextflow.io/docs/latest/config.html#configuration-file\r\n\r\nI have my own genome and annotation files. \r\nIt would also be good to know how to name the file and any other information to make it easier for me or anybody else.\r\n\r\nAlso just another question, would it be possible to use a .gff file instead of a .gtf file? I have made the .gtf file from my .gff file, but I guess it won't be perfect.\r\n\r\nThanks. "}}
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