{"action":"created","issue":{"url":"https://api.github.com/repos/marcelm/cutadapt/issues/318","repository_url":"https://api.github.com/repos/marcelm/cutadapt","labels_url":"https://api.github.com/repos/marcelm/cutadapt/issues/318/labels{/name}","comments_url":"https://api.github.com/repos/marcelm/cutadapt/issues/318/comments","events_url":"https://api.github.com/repos/marcelm/cutadapt/issues/318/events","html_url":"https://github.com/marcelm/cutadapt/issues/318","id":341342893,"node_id":"MDU6SXNzdWUzNDEzNDI4OTM=","number":318,"title":"pip install cutadapt: build fails","user":{"login":"jwhite007","id":5623650,"node_id":"MDQ6VXNlcjU2MjM2NTA=","avatar_url":"https://avatars2.githubusercontent.com/u/5623650?v=4","gravatar_id":"","url":"https://api.github.com/users/jwhite007","html_url":"https://github.com/jwhite007","followers_url":"https://api.github.com/users/jwhite007/followers","following_url":"https://api.github.com/users/jwhite007/following{/other_user}","gists_url":"https://api.github.com/users/jwhite007/gists{/gist_id}","starred_url":"https://api.github.com/users/jwhite007/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jwhite007/subscriptions","organizations_url":"https://api.github.com/users/jwhite007/orgs","repos_url":"https://api.github.com/users/jwhite007/repos","events_url":"https://api.github.com/users/jwhite007/events{/privacy}","received_events_url":"https://api.github.com/users/jwhite007/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2018-07-15T18:52:01Z","updated_at":"2018-08-15T14:09:00Z","closed_at":null,"author_association":"NONE","body":"- Cutadapt and Python version\r\nCutadapt 1.16, Python 3.7.0\r\n\r\nBuild fails with ```pip install cutadapt```. The pertinent lines for the build failure:\r\n```\r\nsrc/cutadapt/_seqio.c: In function '__Pyx__ExceptionSwap':\r\nsrc/cutadapt/_seqio.c:9589:22: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'\r\n     tmp_type = tstate->exc_type;\r\n                      ^\r\nsrc/cutadapt/_seqio.c:9590:23: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'\r\n     tmp_value = tstate->exc_value;\r\n                       ^\r\nsrc/cutadapt/_seqio.c:9591:20: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'\r\n     tmp_tb = tstate->exc_traceback;\r\n                    ^\r\nsrc/cutadapt/_seqio.c:9592:11: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'\r\n     tstate->exc_type = *type;\r\n           ^\r\nsrc/cutadapt/_seqio.c:9593:11: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'\r\n     tstate->exc_value = *value;\r\n           ^\r\nsrc/cutadapt/_seqio.c:9594:11: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'\r\n     tstate->exc_traceback = *tb;\r\n           ^\r\nerror: command 'gcc-5' failed with exit status 1\r\n\r\n    ----------------------------------------\r\nCommand \"/home/linuxbrew/.linuxbrew/opt/python/bin/python3.7 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-install-zi5go87_/cutadapt/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-record-6fb855w2/install-record.txt --single-version-externally-managed --compile\" failed with error code 1 in /tmp/pip-install-zi5go87_/cutadapt/\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/marcelm/cutadapt/issues/comments/413209231","html_url":"https://github.com/marcelm/cutadapt/issues/318#issuecomment-413209231","issue_url":"https://api.github.com/repos/marcelm/cutadapt/issues/318","id":413209231,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMzIwOTIzMQ==","user":{"login":"jwhite007","id":5623650,"node_id":"MDQ6VXNlcjU2MjM2NTA=","avatar_url":"https://avatars2.githubusercontent.com/u/5623650?v=4","gravatar_id":"","url":"https://api.github.com/users/jwhite007","html_url":"https://github.com/jwhite007","followers_url":"https://api.github.com/users/jwhite007/followers","following_url":"https://api.github.com/users/jwhite007/following{/other_user}","gists_url":"https://api.github.com/users/jwhite007/gists{/gist_id}","starred_url":"https://api.github.com/users/jwhite007/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jwhite007/subscriptions","organizations_url":"https://api.github.com/users/jwhite007/orgs","repos_url":"https://api.github.com/users/jwhite007/repos","events_url":"https://api.github.com/users/jwhite007/events{/privacy}","received_events_url":"https://api.github.com/users/jwhite007/received_events","type":"User","site_admin":false},"created_at":"2018-08-15T14:09:00Z","updated_at":"2018-08-15T14:09:00Z","author_association":"NONE","body":"@marcelm, which is the developer version? I only see one non-stale branch, master, in the github repo. I tried to install that with ```pip3 install git+https://github.com/marcelm/cutadapt.git```, and that fails in the same way.\r\n\r\nCheers"}}
{"actor":{"display_login":"jwhite007"}}