{"action":"created","issue":{"url":"https://api.github.com/repos/AlexsLemonade/refinebio/issues/722","repository_url":"https://api.github.com/repos/AlexsLemonade/refinebio","labels_url":"https://api.github.com/repos/AlexsLemonade/refinebio/issues/722/labels{/name}","comments_url":"https://api.github.com/repos/AlexsLemonade/refinebio/issues/722/comments","events_url":"https://api.github.com/repos/AlexsLemonade/refinebio/issues/722/events","html_url":"https://github.com/AlexsLemonade/refinebio/issues/722","id":368241446,"node_id":"MDU6SXNzdWUzNjgyNDE0NDY=","number":722,"title":"tximport RDS object should be at the transcript 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Context\r\n\r\nLooking into #508 & downloading files \r\n\r\n### Problem or idea\r\n\r\nIn #278, I made a mistake in asking @dongbohu to change the parameter below to `FALSE`.\r\n\r\nhttps://github.com/AlexsLemonade/refinebio/blob/79d9d9032caaa7ffda6ad898862da16b82edcbab/workers/data_refinery_workers/processors/tximport.R#L49\r\n\r\nThis means that the `txi_out.RDS` file is at the gene-level rather than the desired transcript-level.\r\n\r\n### Solution or next step\r\n\r\nThis parameter should set to `TRUE`\r\n\r\n### New Issue Checklist\r\n\r\n- [x] The title is short and descriptive.\r\n- [x] You have explained the context that led you to write this issue.\r\n- [x] You have reported a problem or idea.\r\n- [x] You have proposed a solution or next step.\r\n"},"comment":{"url":"https://api.github.com/repos/AlexsLemonade/refinebio/issues/comments/428276954","html_url":"https://github.com/AlexsLemonade/refinebio/issues/722#issuecomment-428276954","issue_url":"https://api.github.com/repos/AlexsLemonade/refinebio/issues/722","id":428276954,"node_id":"MDEyOklzc3VlQ29tbWVudDQyODI3Njk1NA==","user":{"login":"jaclyn-taroni","id":19534205,"node_id":"MDQ6VXNlcjE5NTM0MjA1","avatar_url":"https://avatars0.githubusercontent.com/u/19534205?v=4","gravatar_id":"","url":"https://api.github.com/users/jaclyn-taroni","html_url":"https://github.com/jaclyn-taroni","followers_url":"https://api.github.com/users/jaclyn-taroni/followers","following_url":"https://api.github.com/users/jaclyn-taroni/following{/other_user}","gists_url":"https://api.github.com/users/jaclyn-taroni/gists{/gist_id}","starred_url":"https://api.github.com/users/jaclyn-taroni/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jaclyn-taroni/subscriptions","organizations_url":"https://api.github.com/users/jaclyn-taroni/orgs","repos_url":"https://api.github.com/users/jaclyn-taroni/repos","events_url":"https://api.github.com/users/jaclyn-taroni/events{/privacy}","received_events_url":"https://api.github.com/users/jaclyn-taroni/received_events","type":"User","site_admin":false},"created_at":"2018-10-09T17:19:29Z","updated_at":"2018-10-09T17:19:29Z","author_association":"MEMBER","body":"Okay, so, I revisited my notes on this and the way we currently have it is correct! :woman_facepalming: "}}
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