{"action":"created","issue":{"url":"https://api.github.com/repos/cdanielmachado/carveme/issues/43","repository_url":"https://api.github.com/repos/cdanielmachado/carveme","labels_url":"https://api.github.com/repos/cdanielmachado/carveme/issues/43/labels{/name}","comments_url":"https://api.github.com/repos/cdanielmachado/carveme/issues/43/comments","events_url":"https://api.github.com/repos/cdanielmachado/carveme/issues/43/events","html_url":"https://github.com/cdanielmachado/carveme/issues/43","id":387982982,"node_id":"MDU6SXNzdWUzODc5ODI5ODI=","number":43,"title":"failed in installing carveme","user":{"login":"darwinbandoy","id":41028755,"node_id":"MDQ6VXNlcjQxMDI4NzU1","avatar_url":"https://avatars1.githubusercontent.com/u/41028755?v=4","gravatar_id":"","url":"https://api.github.com/users/darwinbandoy","html_url":"https://github.com/darwinbandoy","followers_url":"https://api.github.com/users/darwinbandoy/followers","following_url":"https://api.github.com/users/darwinbandoy/following{/other_user}","gists_url":"https://api.github.com/users/darwinbandoy/gists{/gist_id}","starred_url":"https://api.github.com/users/darwinbandoy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/darwinbandoy/subscriptions","organizations_url":"https://api.github.com/users/darwinbandoy/orgs","repos_url":"https://api.github.com/users/darwinbandoy/repos","events_url":"https://api.github.com/users/darwinbandoy/events{/privacy}","received_events_url":"https://api.github.com/users/darwinbandoy/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-12-05T22:57:59Z","updated_at":"2018-12-06T08:53:58Z","closed_at":"2018-12-06T08:53:58Z","author_association":"NONE","body":"Hi Daniel!\r\nI tried installing carveme on MacOS Mojave and Linux Zorinos but I failed. \r\n\r\nSuggestions: a) maybe a subcommand to check if all dependencies are installed ( prokka and other Torsten Seeman commandline tools usually have the subcommand to check if all dependencies are installed)\r\n\r\nb) anaconda recipe (please)\r\n\r\nHere are my error messages:  \r\nFailed building wheel for python-libsbml\r\n\r\n--------------------------------------------\r\ngcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/miniconda3/include -arch x86_64 -/miniconda3/include -arch x86_64 -DBZIP2_STATIC -DHAVE_MEMMOVE -D_LIB  -DUSE_EXPAT -DUSE_ZLIB -DUSE_BZ2 -DUSE_COMP -DUSE_QUAL -DUSE_FBC -DUSE_LAYOUT -DUSE_GROUPS -DUSE_MULTI -DUSE_RENDER -I./base// -I./base//sbml -I./base//sbml/compress -I./base//sbml/validator/constraints -I./base//sbml/packages/comp/validator -I./base//sbml/packages/comp/validator/constraints -I. -I/miniconda3/include/python3.6m -c ./base/libsbml_wrap.cpp -o build/temp.macosx-10.7-x86_64-3.6/./base/libsbml_wrap.o\r\n    xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun\r\n    error: command 'gcc' failed with exit status 1\r\n    \r\n    ----------------------------------------\r\nCommand \"miniconda3/bin/python -u -c \"import setuptools, tokenize;__file__='/private/var/folders/s1/05bh_q_s15n3tdrqnn7r0ktr0000gn/T/pip-install-zi3dhml2/python-libsbml/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /private/var/folders/s1/05bh_q_s15n3tdrqnn7r0ktr0000gn/T/pip-record-g511jqr6/install-record.txt --single-version-externally-managed --compile\" failed with error code 1 in /private/var/folders/s1/05bh_q_s15n3tdrqnn7r0ktr0000gn/T/pip-install-zi3dhml2/python-libsbml/\r\n"},"comment":{"url":"https://api.github.com/repos/cdanielmachado/carveme/issues/comments/444795924","html_url":"https://github.com/cdanielmachado/carveme/issues/43#issuecomment-444795924","issue_url":"https://api.github.com/repos/cdanielmachado/carveme/issues/43","id":444795924,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0NDc5NTkyNA==","user":{"login":"cdanielmachado","id":2588245,"node_id":"MDQ6VXNlcjI1ODgyNDU=","avatar_url":"https://avatars0.githubusercontent.com/u/2588245?v=4","gravatar_id":"","url":"https://api.github.com/users/cdanielmachado","html_url":"https://github.com/cdanielmachado","followers_url":"https://api.github.com/users/cdanielmachado/followers","following_url":"https://api.github.com/users/cdanielmachado/following{/other_user}","gists_url":"https://api.github.com/users/cdanielmachado/gists{/gist_id}","starred_url":"https://api.github.com/users/cdanielmachado/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cdanielmachado/subscriptions","organizations_url":"https://api.github.com/users/cdanielmachado/orgs","repos_url":"https://api.github.com/users/cdanielmachado/repos","events_url":"https://api.github.com/users/cdanielmachado/events{/privacy}","received_events_url":"https://api.github.com/users/cdanielmachado/received_events","type":"User","site_admin":false},"created_at":"2018-12-06T08:53:58Z","updated_at":"2018-12-06T08:53:58Z","author_association":"OWNER","body":"Hi, I guess this is failing because you don't have command line tools installed for mac ?\r\n\r\nIf you use `pip install carveme`, it will automatically install all the python library dependencies. But of course, it cannot prevent something from going wrong if any package fails to install...\r\n\r\nThe conda installer has been suggested by other users and is in our plans:\r\n\r\nhttps://github.com/cdanielmachado/carveme/issues/9"}}
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