{"action":"created","issue":{"url":"https://api.github.com/repos/compbiomed/celda/issues/276","repository_url":"https://api.github.com/repos/compbiomed/celda","labels_url":"https://api.github.com/repos/compbiomed/celda/issues/276/labels{/name}","comments_url":"https://api.github.com/repos/compbiomed/celda/issues/276/comments","events_url":"https://api.github.com/repos/compbiomed/celda/issues/276/events","html_url":"https://github.com/compbiomed/celda/issues/276","id":340404071,"node_id":"MDU6SXNzdWUzNDA0MDQwNzE=","number":276,"title":"Install Documentation","user":{"login":"bretonics","id":3980538,"node_id":"MDQ6VXNlcjM5ODA1Mzg=","avatar_url":"https://avatars0.githubusercontent.com/u/3980538?v=4","gravatar_id":"","url":"https://api.github.com/users/bretonics","html_url":"https://github.com/bretonics","followers_url":"https://api.github.com/users/bretonics/followers","following_url":"https://api.github.com/users/bretonics/following{/other_user}","gists_url":"https://api.github.com/users/bretonics/gists{/gist_id}","starred_url":"https://api.github.com/users/bretonics/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bretonics/subscriptions","organizations_url":"https://api.github.com/users/bretonics/orgs","repos_url":"https://api.github.com/users/bretonics/repos","events_url":"https://api.github.com/users/bretonics/events{/privacy}","received_events_url":"https://api.github.com/users/bretonics/received_events","type":"User","site_admin":false},"labels":[{"id":600796915,"node_id":"MDU6TGFiZWw2MDA3OTY5MTU=","url":"https://api.github.com/repos/compbiomed/celda/labels/quality","name":"quality","color":"fbca04","default":false}],"state":"closed","locked":false,"assignee":{"login":"definitelysean","id":9970218,"node_id":"MDQ6VXNlcjk5NzAyMTg=","avatar_url":"https://avatars0.githubusercontent.com/u/9970218?v=4","gravatar_id":"","url":"https://api.github.com/users/definitelysean","html_url":"https://github.com/definitelysean","followers_url":"https://api.github.com/users/definitelysean/followers","following_url":"https://api.github.com/users/definitelysean/following{/other_user}","gists_url":"https://api.github.com/users/definitelysean/gists{/gist_id}","starred_url":"https://api.github.com/users/definitelysean/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/definitelysean/subscriptions","organizations_url":"https://api.github.com/users/definitelysean/orgs","repos_url":"https://api.github.com/users/definitelysean/repos","events_url":"https://api.github.com/users/definitelysean/events{/privacy}","received_events_url":"https://api.github.com/users/definitelysean/received_events","type":"User","site_admin":false},"assignees":[{"login":"definitelysean","id":9970218,"node_id":"MDQ6VXNlcjk5NzAyMTg=","avatar_url":"https://avatars0.githubusercontent.com/u/9970218?v=4","gravatar_id":"","url":"https://api.github.com/users/definitelysean","html_url":"https://github.com/definitelysean","followers_url":"https://api.github.com/users/definitelysean/followers","following_url":"https://api.github.com/users/definitelysean/following{/other_user}","gists_url":"https://api.github.com/users/definitelysean/gists{/gist_id}","starred_url":"https://api.github.com/users/definitelysean/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/definitelysean/subscriptions","organizations_url":"https://api.github.com/users/definitelysean/orgs","repos_url":"https://api.github.com/users/definitelysean/repos","events_url":"https://api.github.com/users/definitelysean/events{/privacy}","received_events_url":"https://api.github.com/users/definitelysean/received_events","type":"User","site_admin":false},{"login":"ykoga07","id":26311595,"node_id":"MDQ6VXNlcjI2MzExNTk1","avatar_url":"https://avatars1.githubusercontent.com/u/26311595?v=4","gravatar_id":"","url":"https://api.github.com/users/ykoga07","html_url":"https://github.com/ykoga07","followers_url":"https://api.github.com/users/ykoga07/followers","following_url":"https://api.github.com/users/ykoga07/following{/other_user}","gists_url":"https://api.github.com/users/ykoga07/gists{/gist_id}","starred_url":"https://api.github.com/users/ykoga07/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ykoga07/subscriptions","organizations_url":"https://api.github.com/users/ykoga07/orgs","repos_url":"https://api.github.com/users/ykoga07/repos","events_url":"https://api.github.com/users/ykoga07/events{/privacy}","received_events_url":"https://api.github.com/users/ykoga07/received_events","type":"User","site_admin":false}],"milestone":null,"comments":4,"created_at":"2018-07-11T21:03:54Z","updated_at":"2018-07-24T23:22:39Z","closed_at":"2018-07-24T17:50:32Z","author_association":"NONE","body":"Write more specific installation instructions. Current [installation instructions](https://github.com/compbiomed/celda#installation-instructions) should include:\r\n\r\n- [ ] R version support\r\n- [ ] Maybe include package dependencies?\r\n\r\nCurrently **R version 3.5.0 is not** supported. **libgit2** required for devtools package install. Not sure if this is dependent on a `brew` install and not affecting install from CRAN source. devtools dependency is solved via `brew install libgit2`, but Celda won't support R 3.5.0 yet as lintr, MAST, SummarizedExperiment, and GenomicRanges packages do not support R version 3.5.0.\r\n\r\nCan confirm install works as expected using R 3.4.4."},"comment":{"url":"https://api.github.com/repos/compbiomed/celda/issues/comments/407583218","html_url":"https://github.com/compbiomed/celda/issues/276#issuecomment-407583218","issue_url":"https://api.github.com/repos/compbiomed/celda/issues/276","id":407583218,"node_id":"MDEyOklzc3VlQ29tbWVudDQwNzU4MzIxOA==","user":{"login":"bretonics","id":3980538,"node_id":"MDQ6VXNlcjM5ODA1Mzg=","avatar_url":"https://avatars0.githubusercontent.com/u/3980538?v=4","gravatar_id":"","url":"https://api.github.com/users/bretonics","html_url":"https://github.com/bretonics","followers_url":"https://api.github.com/users/bretonics/followers","following_url":"https://api.github.com/users/bretonics/following{/other_user}","gists_url":"https://api.github.com/users/bretonics/gists{/gist_id}","starred_url":"https://api.github.com/users/bretonics/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bretonics/subscriptions","organizations_url":"https://api.github.com/users/bretonics/orgs","repos_url":"https://api.github.com/users/bretonics/repos","events_url":"https://api.github.com/users/bretonics/events{/privacy}","received_events_url":"https://api.github.com/users/bretonics/received_events","type":"User","site_admin":false},"created_at":"2018-07-24T23:22:39Z","updated_at":"2018-07-24T23:22:39Z","author_association":"NONE","body":"@definitelysean, yes I know they need to be installed from Bioconductor. A previous comment from Friday did not post stating this very thing: that it fails if you don't have these dependencies installed as it needs **biocLite**. Good call on adding that in the install instructions.\r\n\r\nTo further describe, I tested it with a fresh R install from CRAN and installation succeeds, which means that there might be an issue with a `brew r` install and maybe you you may need libgit2. Who knows without further testing.\r\n\r\nJust to keep in mind in case someone comes along with this same issue."}}
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