{"action":"opened","issue":{"url":"https://api.github.com/repos/PeeperLab/CopywriteR/issues/22","repository_url":"https://api.github.com/repos/PeeperLab/CopywriteR","labels_url":"https://api.github.com/repos/PeeperLab/CopywriteR/issues/22/labels{/name}","comments_url":"https://api.github.com/repos/PeeperLab/CopywriteR/issues/22/comments","events_url":"https://api.github.com/repos/PeeperLab/CopywriteR/issues/22/events","html_url":"https://github.com/PeeperLab/CopywriteR/issues/22","id":314262647,"number":22,"title":"issue about the bin size","user":{"login":"yx080","id":36491244,"avatar_url":"https://avatars3.githubusercontent.com/u/36491244?v=4","gravatar_id":"","url":"https://api.github.com/users/yx080","html_url":"https://github.com/yx080","followers_url":"https://api.github.com/users/yx080/followers","following_url":"https://api.github.com/users/yx080/following{/other_user}","gists_url":"https://api.github.com/users/yx080/gists{/gist_id}","starred_url":"https://api.github.com/users/yx080/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/yx080/subscriptions","organizations_url":"https://api.github.com/users/yx080/orgs","repos_url":"https://api.github.com/users/yx080/repos","events_url":"https://api.github.com/users/yx080/events{/privacy}","received_events_url":"https://api.github.com/users/yx080/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-04-13T21:59:58Z","updated_at":"2018-04-13T21:59:58Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nI have problem running the CopywriteR, the error message is:\r\n**_\"Error in value[[3L]](cond) : \r\n  The GC-content and mappability normalization did not work due to a failure to calculate loesses. This can\r\n  generally be solved by using larger bin sizes. Stopping execution of the remaining part of the script...\r\nIn addition: Warning message:\r\nIn png(plot, width = 700, height = 1400) :\r\n  unable to open connection to X11 display \"_**\r\n\r\nBut I think the bin size I used is pretty large( 200kb ), I remember I saw the same error message last month when I tested this package, I realized the problem was because I used the de-duplicated bam files by mistake. I changed the bam files and successfully ran it. This time I used the normal bam file, same code to run, but it still crashed. \r\n\r\nCould you please help me to figure it out? My code and log files are attached.\r\n[copywriteR_test.zip](https://github.com/PeeperLab/CopywriteR/files/1909559/copywriteR_test.zip)\r\n\r\nThank you very much!\r\n\r\n\r\n\r\n"}}
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