{"action":"created","issue":{"url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST/issues/34","repository_url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST","labels_url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST/issues/34/labels{/name}","comments_url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST/issues/34/comments","events_url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST/issues/34/events","html_url":"https://github.com/JaneliaSciComp/JRCLUST/issues/34","id":354295161,"node_id":"MDU6SXNzdWUzNTQyOTUxNjE=","number":34,"title":"Cluster Size and Firing Rates","user":{"login":"udlahoti","id":42011209,"node_id":"MDQ6VXNlcjQyMDExMjA5","avatar_url":"https://avatars3.githubusercontent.com/u/42011209?v=4","gravatar_id":"","url":"https://api.github.com/users/udlahoti","html_url":"https://github.com/udlahoti","followers_url":"https://api.github.com/users/udlahoti/followers","following_url":"https://api.github.com/users/udlahoti/following{/other_user}","gists_url":"https://api.github.com/users/udlahoti/gists{/gist_id}","starred_url":"https://api.github.com/users/udlahoti/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/udlahoti/subscriptions","organizations_url":"https://api.github.com/users/udlahoti/orgs","repos_url":"https://api.github.com/users/udlahoti/repos","events_url":"https://api.github.com/users/udlahoti/events{/privacy}","received_events_url":"https://api.github.com/users/udlahoti/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-08-27T12:16:47Z","updated_at":"2018-08-27T23:11:44Z","closed_at":null,"author_association":"NONE","body":"Hi,\r\n\r\nOur lab is currently looking at different spike sorting programs that can effectively sort high-density extracellular recordings. While we were able to get JRCLUST running, the cluster sizes are consistently 1/10th of those sorted by Klusta. \r\n\r\nIs there a reason JRCLUST yields lower firing rates than other softwares and if so, are there any parameters we can change to more accurately represent the dataset? Please let me know.\r\n\r\nThanks,\r\nYL"},"comment":{"url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST/issues/comments/416398279","html_url":"https://github.com/JaneliaSciComp/JRCLUST/issues/34#issuecomment-416398279","issue_url":"https://api.github.com/repos/JaneliaSciComp/JRCLUST/issues/34","id":416398279,"node_id":"MDEyOklzc3VlQ29tbWVudDQxNjM5ODI3OQ==","user":{"login":"aliddell","id":844464,"node_id":"MDQ6VXNlcjg0NDQ2NA==","avatar_url":"https://avatars3.githubusercontent.com/u/844464?v=4","gravatar_id":"","url":"https://api.github.com/users/aliddell","html_url":"https://github.com/aliddell","followers_url":"https://api.github.com/users/aliddell/followers","following_url":"https://api.github.com/users/aliddell/following{/other_user}","gists_url":"https://api.github.com/users/aliddell/gists{/gist_id}","starred_url":"https://api.github.com/users/aliddell/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/aliddell/subscriptions","organizations_url":"https://api.github.com/users/aliddell/orgs","repos_url":"https://api.github.com/users/aliddell/repos","events_url":"https://api.github.com/users/aliddell/events{/privacy}","received_events_url":"https://api.github.com/users/aliddell/received_events","type":"User","site_admin":false},"created_at":"2018-08-27T23:11:44Z","updated_at":"2018-08-27T23:11:44Z","author_association":"COLLABORATOR","body":"So you're getting fewer events detected overall, correct? Any chance I can take a look at the data and your parameter file? I could try to sort it in Klusta too, but I've never used Klusta so I probably won't get the same results.\r\n\r\nIn the meantime there are many [parameters](https://github.com/JaneliaSciComp/JRCLUST/wiki/Parameters-struct-(P)) (sorry the wiki is somewhat incomplete and out of date but this page is pretty solid, and you can sort of get an idea from the comments in your .prm file) that control how events are detected and if/how clusters are merged. You could try adjusting these. JRC is very configurable."}}
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