{"action":"closed","issue":{"url":"https://api.github.com/repos/bcgsc/ntCard/issues/12","repository_url":"https://api.github.com/repos/bcgsc/ntCard","labels_url":"https://api.github.com/repos/bcgsc/ntCard/issues/12/labels{/name}","comments_url":"https://api.github.com/repos/bcgsc/ntCard/issues/12/comments","events_url":"https://api.github.com/repos/bcgsc/ntCard/issues/12/events","html_url":"https://github.com/bcgsc/ntCard/issues/12","id":313834276,"number":12,"title":"headerless fasta sequences seem to be ignored","user":{"login":"rsharris","id":669475,"avatar_url":"https://avatars2.githubusercontent.com/u/669475?v=4","gravatar_id":"","url":"https://api.github.com/users/rsharris","html_url":"https://github.com/rsharris","followers_url":"https://api.github.com/users/rsharris/followers","following_url":"https://api.github.com/users/rsharris/following{/other_user}","gists_url":"https://api.github.com/users/rsharris/gists{/gist_id}","starred_url":"https://api.github.com/users/rsharris/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rsharris/subscriptions","organizations_url":"https://api.github.com/users/rsharris/orgs","repos_url":"https://api.github.com/users/rsharris/repos","events_url":"https://api.github.com/users/rsharris/events{/privacy}","received_events_url":"https://api.github.com/users/rsharris/received_events","type":"User","site_admin":false},"labels":[{"id":384975220,"url":"https://api.github.com/repos/bcgsc/ntCard/labels/bug","name":"bug","color":"ee0701","default":true}],"state":"closed","locked":false,"assignee":{"login":"mohamadi","id":2709088,"avatar_url":"https://avatars0.githubusercontent.com/u/2709088?v=4","gravatar_id":"","url":"https://api.github.com/users/mohamadi","html_url":"https://github.com/mohamadi","followers_url":"https://api.github.com/users/mohamadi/followers","following_url":"https://api.github.com/users/mohamadi/following{/other_user}","gists_url":"https://api.github.com/users/mohamadi/gists{/gist_id}","starred_url":"https://api.github.com/users/mohamadi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mohamadi/subscriptions","organizations_url":"https://api.github.com/users/mohamadi/orgs","repos_url":"https://api.github.com/users/mohamadi/repos","events_url":"https://api.github.com/users/mohamadi/events{/privacy}","received_events_url":"https://api.github.com/users/mohamadi/received_events","type":"User","site_admin":false},"assignees":[{"login":"mohamadi","id":2709088,"avatar_url":"https://avatars0.githubusercontent.com/u/2709088?v=4","gravatar_id":"","url":"https://api.github.com/users/mohamadi","html_url":"https://github.com/mohamadi","followers_url":"https://api.github.com/users/mohamadi/followers","following_url":"https://api.github.com/users/mohamadi/following{/other_user}","gists_url":"https://api.github.com/users/mohamadi/gists{/gist_id}","starred_url":"https://api.github.com/users/mohamadi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mohamadi/subscriptions","organizations_url":"https://api.github.com/users/mohamadi/orgs","repos_url":"https://api.github.com/users/mohamadi/repos","events_url":"https://api.github.com/users/mohamadi/events{/privacy}","received_events_url":"https://api.github.com/users/mohamadi/received_events","type":"User","site_admin":false}],"milestone":null,"comments":4,"created_at":"2018-04-12T18:14:41Z","updated_at":"2018-04-14T00:55:46Z","closed_at":"2018-04-14T00:55:46Z","author_association":"NONE","body":"(Using the tagged release 1.0.1)\r\n\r\nFYI, it seems that if given a fasta file that has no \">\" header, ntcard simply ignores the whole file.\r\n\r\nIn my case, it was obvious there was *some* problem, because I only had one file, and since it had no header, I got what were obviously meaningless results (a few zeros followed by a bunch of 2^63s).  But it did take me some time to figure out what I was doing wrong.\r\n\r\nSeems like the user ought to made aware of this, either a note in the readme, or a runtime warning if a headerless sequence is encountered.\r\n\r\nIt seems possible that the underlying problem might ignore some of the input but not all, in which case the user would probably be unaware of it.\r\n\r\nIn case it makes any difference, I was piping my fasta in on stdin, and using /dev/stdin as the filename."}}
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