{"action":"created","issue":{"url":"https://api.github.com/repos/PathwayCommons/app-ui/issues/1078","repository_url":"https://api.github.com/repos/PathwayCommons/app-ui","labels_url":"https://api.github.com/repos/PathwayCommons/app-ui/issues/1078/labels{/name}","comments_url":"https://api.github.com/repos/PathwayCommons/app-ui/issues/1078/comments","events_url":"https://api.github.com/repos/PathwayCommons/app-ui/issues/1078/events","html_url":"https://github.com/PathwayCommons/app-ui/issues/1078","id":361376037,"node_id":"MDU6SXNzdWUzNjEzNzYwMzc=","number":1078,"title":"Where's my hairball?","user":{"login":"d2fong","id":2328291,"node_id":"MDQ6VXNlcjIzMjgyOTE=","avatar_url":"https://avatars3.githubusercontent.com/u/2328291?v=4","gravatar_id":"","url":"https://api.github.com/users/d2fong","html_url":"https://github.com/d2fong","followers_url":"https://api.github.com/users/d2fong/followers","following_url":"https://api.github.com/users/d2fong/following{/other_user}","gists_url":"https://api.github.com/users/d2fong/gists{/gist_id}","starred_url":"https://api.github.com/users/d2fong/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/d2fong/subscriptions","organizations_url":"https://api.github.com/users/d2fong/orgs","repos_url":"https://api.github.com/users/d2fong/repos","events_url":"https://api.github.com/users/d2fong/events{/privacy}","received_events_url":"https://api.github.com/users/d2fong/received_events","type":"User","site_admin":false},"labels":[{"id":814220801,"node_id":"MDU6TGFiZWw4MTQyMjA4MDE=","url":"https://api.github.com/repos/PathwayCommons/app-ui/labels/Interactions","name":"Interactions","color":"e99695","default":false},{"id":703721742,"node_id":"MDU6TGFiZWw3MDM3MjE3NDI=","url":"https://api.github.com/repos/PathwayCommons/app-ui/labels/question","name":"question","color":"cc317c","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-09-18T16:01:41Z","updated_at":"2018-09-18T16:30:51Z","closed_at":null,"author_association":"MEMBER","body":"If we use the new sifgraph service, the results look something like this:\r\n@maxkfranz @jvwong @IgorRodchenkov \r\n![screen shot 2018-09-18 at 11 59 26 am](https://user-images.githubusercontent.com/2328291/45700363-51d1c780-bb3a-11e8-834f-9bdbbc3b45af.png)\r\n\r\nDoes it still make sense to only show 25 nodes?\r\n\r\n@IgorRodchenkov Do all results from this new service exhibit these properties (all nodes connected to the source, no edges between non-source nodes?"},"comment":{"url":"https://api.github.com/repos/PathwayCommons/app-ui/issues/comments/422461196","html_url":"https://github.com/PathwayCommons/app-ui/issues/1078#issuecomment-422461196","issue_url":"https://api.github.com/repos/PathwayCommons/app-ui/issues/1078","id":422461196,"node_id":"MDEyOklzc3VlQ29tbWVudDQyMjQ2MTE5Ng==","user":{"login":"IgorRodchenkov","id":991169,"node_id":"MDQ6VXNlcjk5MTE2OQ==","avatar_url":"https://avatars0.githubusercontent.com/u/991169?v=4","gravatar_id":"","url":"https://api.github.com/users/IgorRodchenkov","html_url":"https://github.com/IgorRodchenkov","followers_url":"https://api.github.com/users/IgorRodchenkov/followers","following_url":"https://api.github.com/users/IgorRodchenkov/following{/other_user}","gists_url":"https://api.github.com/users/IgorRodchenkov/gists{/gist_id}","starred_url":"https://api.github.com/users/IgorRodchenkov/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/IgorRodchenkov/subscriptions","organizations_url":"https://api.github.com/users/IgorRodchenkov/orgs","repos_url":"https://api.github.com/users/IgorRodchenkov/repos","events_url":"https://api.github.com/users/IgorRodchenkov/events{/privacy}","received_events_url":"https://api.github.com/users/IgorRodchenkov/received_events","type":"User","site_admin":false},"created_at":"2018-09-18T16:30:50Z","updated_at":"2018-09-18T16:30:50Z","author_association":"MEMBER","body":"Indeed, Sifgraph service returns only those edges where a source/target node is present, e.g.: \r\n\r\n`http://www.pathwaycommons.org/sifgraph/v1/neighborhood?direction=UNDIRECTED&pattern=CONTROLS_EXPRESSION_OF&source=TP53`\r\n\r\nI think, this is a feature of the [Sifgraph java library](https://github.com/PathwayCommons/sifgraph), but unsure whether it is expected behavior or side-effect, though.\r\n\r\nOzgun @ozgunbabur , what do you think?"}}
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