{"action":"created","issue":{"url":"https://api.github.com/repos/robertaboukhalil/ginkgo/issues/13","repository_url":"https://api.github.com/repos/robertaboukhalil/ginkgo","labels_url":"https://api.github.com/repos/robertaboukhalil/ginkgo/issues/13/labels{/name}","comments_url":"https://api.github.com/repos/robertaboukhalil/ginkgo/issues/13/comments","events_url":"https://api.github.com/repos/robertaboukhalil/ginkgo/issues/13/events","html_url":"https://github.com/robertaboukhalil/ginkgo/issues/13","id":382451232,"node_id":"MDU6SXNzdWUzODI0NTEyMzI=","number":13,"title":"Gingko Web Platform: Copy number calls stalling with FACS input. ","user":{"login":"andrewrlynch","id":37605960,"node_id":"MDQ6VXNlcjM3NjA1OTYw","avatar_url":"https://avatars2.githubusercontent.com/u/37605960?v=4","gravatar_id":"","url":"https://api.github.com/users/andrewrlynch","html_url":"https://github.com/andrewrlynch","followers_url":"https://api.github.com/users/andrewrlynch/followers","following_url":"https://api.github.com/users/andrewrlynch/following{/other_user}","gists_url":"https://api.github.com/users/andrewrlynch/gists{/gist_id}","starred_url":"https://api.github.com/users/andrewrlynch/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andrewrlynch/subscriptions","organizations_url":"https://api.github.com/users/andrewrlynch/orgs","repos_url":"https://api.github.com/users/andrewrlynch/repos","events_url":"https://api.github.com/users/andrewrlynch/events{/privacy}","received_events_url":"https://api.github.com/users/andrewrlynch/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-11-20T00:41:29Z","updated_at":"2018-11-21T15:02:59Z","closed_at":null,"author_association":"NONE","body":"I'm analyzing a set of about 300 single cells on the Gingko web app. The karyotypes are very strange so I input a table of predicted ploidy for the cells by DAPI content. The problem is that the data processing is stalling out at certain cells. I can exclude these cells and obviously it will skip them, however it will stall out again on a different cell. Some example ploidy values that this has occurred on are 1.3, 3.4 and 3.9. Any ideas? Thanks!\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/robertaboukhalil/ginkgo/issues/comments/440695163","html_url":"https://github.com/robertaboukhalil/ginkgo/issues/13#issuecomment-440695163","issue_url":"https://api.github.com/repos/robertaboukhalil/ginkgo/issues/13","id":440695163,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0MDY5NTE2Mw==","user":{"login":"jpritt","id":5325927,"node_id":"MDQ6VXNlcjUzMjU5Mjc=","avatar_url":"https://avatars0.githubusercontent.com/u/5325927?v=4","gravatar_id":"","url":"https://api.github.com/users/jpritt","html_url":"https://github.com/jpritt","followers_url":"https://api.github.com/users/jpritt/followers","following_url":"https://api.github.com/users/jpritt/following{/other_user}","gists_url":"https://api.github.com/users/jpritt/gists{/gist_id}","starred_url":"https://api.github.com/users/jpritt/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jpritt/subscriptions","organizations_url":"https://api.github.com/users/jpritt/orgs","repos_url":"https://api.github.com/users/jpritt/repos","events_url":"https://api.github.com/users/jpritt/events{/privacy}","received_events_url":"https://api.github.com/users/jpritt/received_events","type":"User","site_admin":false},"created_at":"2018-11-21T15:02:59Z","updated_at":"2018-11-21T15:02:59Z","author_association":"CONTRIBUTOR","body":"Hi Andrew, I am currently working on improving Ginkgo so I took a look at your problem. It appears the facs file was responsible for stalling, as when I ran the analysis without the file it finished quickly. However I don't see your facs file in the directory - would you mind uploading it here or adding it to the project so I can take a look?\r\n\r\nThanks,\r\nJacob"}}
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