{"action":"created","issue":{"url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC/issues/238","repository_url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC","labels_url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC/issues/238/labels{/name}","comments_url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC/issues/238/comments","events_url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC/issues/238/events","html_url":"https://github.com/Mouse-Imaging-Centre/RMINC/issues/238","id":375529385,"node_id":"MDU6SXNzdWUzNzU1MjkzODU=","number":238,"title":"RMINC install returning FALSE but successful","user":{"login":"gdevenyi","id":3001850,"node_id":"MDQ6VXNlcjMwMDE4NTA=","avatar_url":"https://avatars0.githubusercontent.com/u/3001850?v=4","gravatar_id":"","url":"https://api.github.com/users/gdevenyi","html_url":"https://github.com/gdevenyi","followers_url":"https://api.github.com/users/gdevenyi/followers","following_url":"https://api.github.com/users/gdevenyi/following{/other_user}","gists_url":"https://api.github.com/users/gdevenyi/gists{/gist_id}","starred_url":"https://api.github.com/users/gdevenyi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gdevenyi/subscriptions","organizations_url":"https://api.github.com/users/gdevenyi/orgs","repos_url":"https://api.github.com/users/gdevenyi/repos","events_url":"https://api.github.com/users/gdevenyi/events{/privacy}","received_events_url":"https://api.github.com/users/gdevenyi/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":11,"created_at":"2018-10-30T14:49:21Z","updated_at":"2018-10-30T19:39:38Z","closed_at":"2018-10-30T19:31:43Z","author_association":"NONE","body":"More issues with the VM.....\r\n\r\nEverything looks fine, and logging in and testing, RMINC runs...\r\n\r\nAny ideas?\r\n\r\n```\r\n    mincvm-virtualbox: + export MINC_PATH=/opt/minc/1.9.16\r\n    mincvm-virtualbox: + MINC_PATH=/opt/minc/1.9.16\r\n    mincvm-virtualbox: + export PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin\r\n    mincvm-virtualbox: + PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin\r\n    mincvm-virtualbox: + Rscript --vanilla -\r\n    mincvm-virtualbox: + cat\r\n    mincvm-virtualbox: Downloading package from url: https://github.com/Mouse-Imaging-Centre/RMINC/archive/v1.5.2.1.tar.gz\r\n    mincvm-virtualbox: lmerTest     (NA     -> 3.0-1   ) [CRAN]\r\n    mincvm-virtualbox: manipulat... (NA     -> 0.10.0  ) [CRAN]\r\n    mincvm-virtualbox: miniUI       (NA     -> 0.1.1.1 ) [CRAN]\r\n    mincvm-virtualbox: numDeriv     (NA     -> 2016.8-1) [CRAN]\r\n    mincvm-virtualbox: rgl          (0.99.9 -> 0.99.16 ) [CRAN]\r\n    mincvm-virtualbox: tidyr        (0.8.1  -> 0.8.2   ) [CRAN]\r\n    mincvm-virtualbox: webshot      (NA     -> 0.5.1   ) [CRAN]\r\n    mincvm-virtualbox: Skipping 2 packages ahead of CRAN: BiocInstaller, qvalue\r\n    mincvm-virtualbox: Installing 7 packages: lmerTest, manipulateWidget, miniUI, numDeriv, rgl, tidyr, webshot\r\n    mincvm-virtualbox: Installing packages into '/usr/local/lib/R/site-library'\r\n    mincvm-virtualbox: (as 'lib' is unspecified)\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/lmerTest_3.0-1.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 97064 bytes (94 KB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 94 KB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/manipulateWidget_0.10.0.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 3242505 bytes (3.1 MB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 3.1 MB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/miniUI_0.1.1.1.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 97958 bytes (95 KB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 95 KB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/numDeriv_2016.8-1.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 76303 bytes (74 KB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 74 KB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/rgl_0.99.16.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 3058794 bytes (2.9 MB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 2.9 MB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/tidyr_0.8.2.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 378735 bytes (369 KB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 369 KB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: trying URL 'http://cloud.r-project.org/src/contrib/webshot_0.5.1.tar.gz'\r\n    mincvm-virtualbox: Content type 'application/x-gzip' length 156828 bytes (153 KB)\r\n    mincvm-virtualbox: ==================================================\r\n    mincvm-virtualbox: downloaded 153 KB\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: * installing *source* package 'miniUI' ...\r\n    mincvm-virtualbox: ** package 'miniUI' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (miniUI)\r\n    mincvm-virtualbox: * installing *source* package 'numDeriv' ...\r\n    mincvm-virtualbox: ** package 'numDeriv' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** installing vignettes\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (numDeriv)\r\n    mincvm-virtualbox: * installing *source* package 'tidyr' ...\r\n    mincvm-virtualbox: ** package 'tidyr' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: ** libs\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG  -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RcppExports.cpp -o RcppExports.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG  -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c fill.cpp -o fill.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG  -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c melt.cpp -o melt.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG  -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c simplifyPieces.cpp -o simplifyPieces.o\r\n    mincvm-virtualbox: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tidyr.so RcppExports.o fill.o melt.o simplifyPieces.o -L/usr/lib/R/lib -lR\r\n    mincvm-virtualbox: installing to /usr/local/lib/R/site-library/tidyr/libs\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** data\r\n    mincvm-virtualbox: *** moving datasets to lazyload DB\r\n    mincvm-virtualbox: ** demo\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: *** copying figures\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** installing vignettes\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (tidyr)\r\n    mincvm-virtualbox: * installing *source* package 'webshot' ...\r\n    mincvm-virtualbox: ** package 'webshot' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (webshot)\r\n    mincvm-virtualbox: * installing *source* package 'lmerTest' ...\r\n    mincvm-virtualbox: ** package 'lmerTest' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** data\r\n    mincvm-virtualbox: *** moving datasets to lazyload DB\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (lmerTest)\r\n    mincvm-virtualbox: * installing *source* package 'manipulateWidget' ...\r\n    mincvm-virtualbox: ** package 'manipulateWidget' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** installing vignettes\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (manipulateWidget)\r\n    mincvm-virtualbox: * installing *source* package 'rgl' ...\r\n    mincvm-virtualbox: ** package 'rgl' successfully unpacked and MD5 sums checked\r\n    mincvm-virtualbox: checking for gcc... gcc -std=gnu99\r\n    mincvm-virtualbox: checking whether the C compiler works... yes\r\n    mincvm-virtualbox: checking for C compiler default output file name... a.out\r\n    mincvm-virtualbox: checking for suffix of executables...\r\n    mincvm-virtualbox: checking whether we are cross compiling... no\r\n    mincvm-virtualbox: checking for suffix of object files... o\r\n    mincvm-virtualbox: checking whether we are using the GNU C compiler... yes\r\n    mincvm-virtualbox: checking whether gcc -std=gnu99 accepts -g... yes\r\n    mincvm-virtualbox: checking for gcc -std=gnu99 option to accept ISO C89... none needed\r\n    mincvm-virtualbox: checking how to run the C preprocessor... gcc -std=gnu99 -E\r\n    mincvm-virtualbox: checking for gcc... (cached) gcc -std=gnu99\r\n    mincvm-virtualbox: checking whether we are using the GNU C compiler... (cached) yes\r\n    mincvm-virtualbox: checking whether gcc -std=gnu99 accepts -g... (cached) yes\r\n    mincvm-virtualbox: checking for gcc -std=gnu99 option to accept ISO C89... (cached) none needed\r\n    mincvm-virtualbox: checking for libpng-config... yes\r\n    mincvm-virtualbox: configure: using libpng-config\r\n    mincvm-virtualbox: configure: using libpng dynamic linkage\r\n    mincvm-virtualbox: checking for X... libraries , headers\r\n    mincvm-virtualbox: checking GL/gl.h usability... yes\r\n    mincvm-virtualbox: checking GL/gl.h presence... yes\r\n    mincvm-virtualbox: checking for GL/gl.h... yes\r\n    mincvm-virtualbox: checking GL/glu.h usability... yes\r\n    mincvm-virtualbox: checking GL/glu.h presence... yes\r\n    mincvm-virtualbox: checking for GL/glu.h... yes\r\n    mincvm-virtualbox: checking for glEnd in -lGL... yes\r\n    mincvm-virtualbox: checking for gluProject in -lGLU... yes\r\n    mincvm-virtualbox: checking for pkg-config... yes\r\n    mincvm-virtualbox: configure: using Freetype and FTGL\r\n    mincvm-virtualbox: configure: creating ./config.status\r\n    mincvm-virtualbox: config.status: creating src/Makevars\r\n    mincvm-virtualbox: ** libs\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c ABCLineSet.cpp -o ABCLineSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c BBoxDeco.cpp -o BBoxDeco.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Background.cpp -o Background.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c ClipPlane.cpp -o ClipPlane.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Color.cpp -o Color.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Disposable.cpp -o Disposable.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Light.cpp -o Light.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c LineSet.cpp -o LineSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c LineStripSet.cpp -o LineStripSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Material.cpp -o Material.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c NULLgui.cpp -o NULLgui.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c PlaneSet.cpp -o PlaneSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c PointSet.cpp -o PointSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c PrimitiveSet.cpp -o PrimitiveSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RenderContext.cpp -o RenderContext.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Shape.cpp -o Shape.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c SphereMesh.cpp -o SphereMesh.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c SphereSet.cpp -o SphereSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c SpriteSet.cpp -o SpriteSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c String.cpp -o String.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Surface.cpp -o Surface.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c TextSet.cpp -o TextSet.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Texture.cpp -o Texture.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c Viewpoint.cpp -o Viewpoint.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c api.cpp -o api.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c assert.cpp -o assert.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c callbacks.cpp -o callbacks.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c device.cpp -o device.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c devicemanager.cpp -o devicemanager.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c fps.cpp -o fps.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c ftgl.cpp -o ftgl.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c geom.cpp -o geom.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c gl2ps.c -o gl2ps.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c glErrors.cpp -o glErrors.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c glgui.cpp -o glgui.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c gui.cpp -o gui.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c init.cpp -o init.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c par3d.cpp -o par3d.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c pixmap.cpp -o pixmap.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c platform.cpp -o platform.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext    -fvisibility=hidden -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c pretty.c -o pretty.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c render.cpp -o render.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c rglmath.cpp -o rglmath.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c rglview.cpp -o rglview.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c scene.cpp -o scene.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c select.cpp -o select.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c subscene.cpp -o subscene.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c win32gui.cpp -o win32gui.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c win32lib.cpp -o win32lib.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c x11gui.cpp -o x11gui.o\r\n    mincvm-virtualbox: g++  -I\"/usr/share/R/include\" -DNDEBUG -DHAVE_PNG_H -I/usr/include/libpng16 -DHAVE_FREETYPE -Iext/ftgl -I/usr/include/freetype2 -I/usr/include/libpng16 -Iext     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c x11lib.cpp -o x11lib.o\r\n    mincvm-virtualbox: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o rgl.so ABCLineSet.o BBoxDeco.o Background.o ClipPlane.o Color.o Disposable.o Light.o LineSet.o LineStripSet.o Material.o NULLgui.o PlaneSet.o PointSet.o PrimitiveSet.o RenderContext.o Shape.o SphereMesh.o SphereSet.o SpriteSet.o String.o Surface.o TextSet.o Texture.o Viewpoint.o api.o assert.o callbacks.o device.o devicemanager.o fps.o ftgl.o geom.o gl2ps.o glErrors.o glgui.o gui.o init.o par3d.o pixmap.o platform.o pretty.o render.o rglmath.o rglview.o scene.o select.o subscene.o win32gui.o win32lib.o x11gui.o x11lib.o -lGLU -lGL -lpng16 -lX11 -lfreetype -L/usr/lib/R/lib -lR\r\n    mincvm-virtualbox: installing to /usr/local/lib/R/site-library/rgl/libs\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** demo\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** installing vignettes\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: Warning in rgl.init(initValue, onlyNULL) :\r\n    mincvm-virtualbox:   RGL: unable to open X11 display\r\n    mincvm-virtualbox: Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE\r\n    mincvm-virtualbox: * DONE (rgl)\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: The downloaded source packages are in\r\n    mincvm-virtualbox: \t'/tmp/RtmpCTZEqn/downloaded_packages'\r\n    mincvm-virtualbox: v  checking for file '/tmp/RtmpCTZEqn/remotes60f21aa0dbb0/RMINC-1.5.2.1/DESCRIPTION'\r\n    mincvm-virtualbox: -  preparing 'RMINC':\r\n    mincvm-virtualbox: v  checking DESCRIPTION meta-information\r\n    mincvm-virtualbox: -  cleaning src\r\n    mincvm-virtualbox: -  running 'cleanup'\r\n    mincvm-virtualbox: -  checking for LF line-endings in source and make files and shell scripts\r\n    mincvm-virtualbox: -  checking for empty or unneeded directories\r\n    mincvm-virtualbox:    Removed empty directory 'RMINC/etc'\r\n    mincvm-virtualbox: -  looking to see if a 'data/datalist' file should be added\r\n    mincvm-virtualbox: -  building 'RMINC_1.5.2.1.tar.gz'\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: Installing package into '/usr/local/lib/R/site-library'\r\n    mincvm-virtualbox: (as 'lib' is unspecified)\r\n    mincvm-virtualbox: * installing *source* package 'RMINC' ...\r\n    mincvm-virtualbox: checking for gcc... gcc\r\n    mincvm-virtualbox: checking whether the C compiler works... yes\r\n    mincvm-virtualbox: checking for C compiler default output file name... a.out\r\n    mincvm-virtualbox: checking for suffix of executables...\r\n    mincvm-virtualbox: checking whether we are cross compiling... no\r\n    mincvm-virtualbox: checking for suffix of object files... o\r\n    mincvm-virtualbox: checking whether we are using the GNU C compiler... yes\r\n    mincvm-virtualbox: checking whether gcc accepts -g... yes\r\n    mincvm-virtualbox: checking for gcc option to accept ISO C89... none needed\r\n    mincvm-virtualbox: checking for g++... g++\r\n    mincvm-virtualbox: checking whether we are using the GNU C++ compiler... yes\r\n    mincvm-virtualbox: checking whether g++ accepts -g... yes\r\n    mincvm-virtualbox: checking how to run the C preprocessor... gcc -E\r\n    mincvm-virtualbox: checking for grep that handles long lines and -e... /bin/grep\r\n    mincvm-virtualbox: checking for egrep... /bin/grep -E\r\n    mincvm-virtualbox: checking for ANSI C header files... yes\r\n    mincvm-virtualbox: checking for sys/types.h... yes\r\n    mincvm-virtualbox: checking for sys/stat.h... yes\r\n    mincvm-virtualbox: checking for stdlib.h... yes\r\n    mincvm-virtualbox: checking for string.h... yes\r\n    mincvm-virtualbox: checking for memory.h... yes\r\n    mincvm-virtualbox: checking for strings.h... yes\r\n    mincvm-virtualbox: checking for inttypes.h... yes\r\n    mincvm-virtualbox: checking for stdint.h... yes\r\n    mincvm-virtualbox: checking for unistd.h... yes\r\n    mincvm-virtualbox: checking for a sed that does not truncate output... /bin/sed\r\n    mincvm-virtualbox: checking for gawk... no\r\n    mincvm-virtualbox: checking for mawk... mawk\r\n    mincvm-virtualbox: checking zlib.h usability... yes\r\n    mincvm-virtualbox: checking zlib.h presence... yes\r\n    mincvm-virtualbox: checking for zlib.h... yes\r\n    mincvm-virtualbox: checking for h5cc... no\r\n    mincvm-virtualbox: checking for h5pcc... no\r\n    mincvm-virtualbox: checking for HDF5 libraries... no\r\n    mincvm-virtualbox: configure: WARNING:\r\n    mincvm-virtualbox: Unable to locate HDF5 compilation helper scripts 'h5cc' or 'h5pcc'.\r\n    mincvm-virtualbox: configure: Searching for libminc\r\n    mincvm-virtualbox: configure: MINC_PATH was specified\r\n    mincvm-virtualbox: Please specify --with-hdf5=<LOCATION> as the full path to h5cc or h5pcc.\r\n    mincvm-virtualbox: HDF5 support is being disabled (equivalent to --with-hdf5=no).\r\n    mincvm-virtualbox:\r\n    mincvm-virtualbox: configure: MINC_PATH set to /opt/minc/1.9.16\r\n    mincvm-virtualbox: configure: override by setting the environment variable MINC_PATH\r\n    mincvm-virtualbox: configure: or by setting --with-build-path as a configure argument\r\n    mincvm-virtualbox: checking for mifree_name in -lminc2... yes\r\n    mincvm-virtualbox: checking for stdbool.h that conforms to C99... yes\r\n    mincvm-virtualbox: checking for _Bool... yes\r\n    mincvm-virtualbox: checking for size_t... yes\r\n    mincvm-virtualbox: checking for error_at_line... yes\r\n    mincvm-virtualbox: checking for stdlib.h... (cached) yes\r\n    mincvm-virtualbox: checking for GNU libc compatible malloc... yes\r\n    mincvm-virtualbox: configure: creating ./config.status\r\n    mincvm-virtualbox: config.status: creating src/Makevars\r\n    mincvm-virtualbox: ** libs\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RMINC_init.c -o RMINC_init.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c anat_summaries.cpp -o anat_summaries.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c minc2_read.c -o minc2_read.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c minc2_support.c -o minc2_support.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c minc2_write.c -o minc2_write.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c minc_anova.c -o minc_anova.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c minc_apply.cpp -o minc_apply.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c minc_cpp.cpp -o minc_cpp.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c minc_reader.c -o minc_reader.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c modelling_functions.c -o modelling_functions.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c slice_loop_functions.c -o slice_loop_functions.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utilities.cpp -o utilities.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c vertex_modelling.c -o vertex_modelling.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vertex_tfce.cpp -o vertex_tfce.o\r\n    mincvm-virtualbox: gcc -std=gnu99 -I\"/usr/share/R/include\" -DNDEBUG -I/opt/minc/1.9.16/include -I\"/usr/lib/R/site-library/Rcpp/include\"    -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-oNcpyf/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c weighted_least_squares.c -o weighted_least_squares.o\r\n    mincvm-virtualbox: g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RMINC.so RMINC_init.o RcppExports.o anat_summaries.o minc2_read.o minc2_support.o minc2_write.o minc_anova.o minc_apply.o minc_cpp.o minc_reader.o modelling_functions.o slice_loop_functions.o utilities.o vertex_modelling.o vertex_tfce.o weighted_least_squares.o -L/opt/minc/1.9.16/lib -Wl,-rpath,/opt/minc/1.9.16/lib -llapack -lblas -lminc2 -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR\r\n    mincvm-virtualbox: installing to /usr/local/lib/R/site-library/RMINC/libs\r\n    mincvm-virtualbox: ** R\r\n    mincvm-virtualbox: ** inst\r\n    mincvm-virtualbox: ** byte-compile and prepare package for lazy loading\r\n    mincvm-virtualbox: Note: wrong number of arguments to '!='\r\n    mincvm-virtualbox: Note: wrong number of arguments to '!='\r\n    mincvm-virtualbox: Note: wrong number of arguments to '!='\r\n    mincvm-virtualbox: Note: wrong number of arguments to '=='\r\n    mincvm-virtualbox: Note: wrong number of arguments to '=='\r\n    mincvm-virtualbox: ** help\r\n    mincvm-virtualbox: *** installing help indices\r\n    mincvm-virtualbox: ** building package indices\r\n    mincvm-virtualbox: ** testing if installed package can be loaded\r\n    mincvm-virtualbox: * DONE (RMINC)\r\n    mincvm-virtualbox: Error: (install_url(\"https://github.com/Mouse-Imaging-Centre/RMINC/archive/v1.5.2.1.tar.gz\",  .... is not TRUE\r\n    mincvm-virtualbox: Execution halted\r\n==> mincvm-virtualbox: Script exited with non-zero exit status: 1\r\n==> mincvm-virtualbox: Step \"StepProvision\" failed, aborting...\r\nBuild 'mincvm-virtualbox' errored: unexpected EOF\r\n\r\n\r\n```"},"comment":{"url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC/issues/comments/434440963","html_url":"https://github.com/Mouse-Imaging-Centre/RMINC/issues/238#issuecomment-434440963","issue_url":"https://api.github.com/repos/Mouse-Imaging-Centre/RMINC/issues/238","id":434440963,"node_id":"MDEyOklzc3VlQ29tbWVudDQzNDQ0MDk2Mw==","user":{"login":"gdevenyi","id":3001850,"node_id":"MDQ6VXNlcjMwMDE4NTA=","avatar_url":"https://avatars0.githubusercontent.com/u/3001850?v=4","gravatar_id":"","url":"https://api.github.com/users/gdevenyi","html_url":"https://github.com/gdevenyi","followers_url":"https://api.github.com/users/gdevenyi/followers","following_url":"https://api.github.com/users/gdevenyi/following{/other_user}","gists_url":"https://api.github.com/users/gdevenyi/gists{/gist_id}","starred_url":"https://api.github.com/users/gdevenyi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gdevenyi/subscriptions","organizations_url":"https://api.github.com/users/gdevenyi/orgs","repos_url":"https://api.github.com/users/gdevenyi/repos","events_url":"https://api.github.com/users/gdevenyi/events{/privacy}","received_events_url":"https://api.github.com/users/gdevenyi/received_events","type":"User","site_admin":false},"created_at":"2018-10-30T19:39:38Z","updated_at":"2018-10-30T19:39:38Z","author_association":"NONE","body":"Its not clear from the devtools NEWS that it does that... "}}
{"actor":{"display_login":"gdevenyi"}}