{"action":"created","comment":{"url":"https://api.github.com/repos/mesosphere/dcos-commons/pulls/comments/218017656","pull_request_review_id":155846176,"id":218017656,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIxODAxNzY1Ng==","diff_hunk":"@@ -0,0 +1,153 @@\n+import logging\n+import os\n+import retrying\n+\n+import sdk_cmd\n+import sdk_diag\n+from sdk_utils import groupby\n+\n+from diagnostics.bundle import Bundle\n+import diagnostics.agent as agent\n+\n+log = logging.getLogger(__name__)\n+\n+DEFAULT_RETRY_WAIT = 1000","path":"tools/diagnostics/service_bundle.py","position":14,"original_position":14,"commit_id":"d7a5e6b4bee3cbdcd610096769f23814ed2ed076","original_commit_id":"d7a5e6b4bee3cbdcd610096769f23814ed2ed076","user":{"login":"porridge","id":489420,"node_id":"MDQ6VXNlcjQ4OTQyMA==","avatar_url":"https://avatars2.githubusercontent.com/u/489420?v=4","gravatar_id":"","url":"https://api.github.com/users/porridge","html_url":"https://github.com/porridge","followers_url":"https://api.github.com/users/porridge/followers","following_url":"https://api.github.com/users/porridge/following{/other_user}","gists_url":"https://api.github.com/users/porridge/gists{/gist_id}","starred_url":"https://api.github.com/users/porridge/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/porridge/subscriptions","organizations_url":"https://api.github.com/users/porridge/orgs","repos_url":"https://api.github.com/users/porridge/repos","events_url":"https://api.github.com/users/porridge/events{/privacy}","received_events_url":"https://api.github.com/users/porridge/received_events","type":"User","site_admin":false},"body":"Same as in the other file.","created_at":"2018-09-17T10:23:42Z","updated_at":"2018-09-17T10:30:49Z","html_url":"https://github.com/mesosphere/dcos-commons/pull/2511#discussion_r218017656","pull_request_url":"https://api.github.com/repos/mesosphere/dcos-commons/pulls/2511","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/mesosphere/dcos-commons/pulls/comments/218017656"},"html":{"href":"https://github.com/mesosphere/dcos-commons/pull/2511#discussion_r218017656"},"pull_request":{"href":"https://api.github.com/repos/mesosphere/dcos-commons/pulls/2511"}}},"pull_request":{"url":"https://api.github.com/repos/mesosphere/dcos-commons/pulls/2511","id":190700926,"node_id":"MDExOlB1bGxSZXF1ZXN0MTkwNzAwOTI2","html_url":"https://github.com/mesosphere/dcos-commons/pull/2511","diff_url":"https://github.com/mesosphere/dcos-commons/pull/2511.diff","patch_url":"https://github.com/mesosphere/dcos-commons/pull/2511.patch","issue_url":"https://api.github.com/repos/mesosphere/dcos-commons/issues/2511","number":2511,"state":"open","locked":false,"title":"[DCOS-37660] Add initial diagnostics script.","user":{"login":"mpereira","id":112426,"node_id":"MDQ6VXNlcjExMjQyNg==","avatar_url":"https://avatars3.githubusercontent.com/u/112426?v=4","gravatar_id":"","url":"https://api.github.com/users/mpereira","html_url":"https://github.com/mpereira","followers_url":"https://api.github.com/users/mpereira/followers","following_url":"https://api.github.com/users/mpereira/following{/other_user}","gists_url":"https://api.github.com/users/mpereira/gists{/gist_id}","starred_url":"https://api.github.com/users/mpereira/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mpereira/subscriptions","organizations_url":"https://api.github.com/users/mpereira/orgs","repos_url":"https://api.github.com/users/mpereira/repos","events_url":"https://api.github.com/users/mpereira/events{/privacy}","received_events_url":"https://api.github.com/users/mpereira/received_events","type":"User","site_admin":false},"body":"**May 25:**\r\nInitial WIP pushed:\r\n\r\n**Jul 30:**\r\nWith the commits I just pushed I believe this is now a Good Enough™ diagnostics tool for SDK services.\r\n\r\nWhat is done:\r\n\r\n-   [X] Fetching of DC/OS version, Mesos tasks, Marathon apps, service configuration, pod status, plans statuses (deploy, recovery, backup-s3, etc.)\r\n-   [X] Fetching of scheduler stderr/stdout logs\r\n-   [X] Fetching of task stderr/stdout logs\r\n-   [X] Fetching of task executor stderr/stdout logs\r\n-   [X] Fetching of killed/failed task stderr/stdout logs (in theory, if Mesos hasn't GC'd the sandbox, the script should be able to do this)\r\n-   [X] Fetching of base-tech specific diagnostics commands (Cassandra \"nodetool status\", Elastic \"node stats\", etc.)\r\n-   [X] An easy way to extend base-tech specific diagnostics commands\r\n-   [X] Retrying on all operations where it makes sense\r\n-   [X] Temporary Docker image pushed to [mpereira/dcos-commons:diagnostics](https://hub.docker.com/r/mpereira/dcos-commons/)\r\n\r\nI re-used some logic from sdk_diag for the fetching of log files. Some of the functions there were a bit too complected with tests (their original intent), so I couldn't use them verbatim. I believe some of the functions in the \"create bundle\" script could be moved to modules. I didn't really worry about that.\r\n\r\nPossible future work:\r\n\r\n-   [ ] Concatenate log files (e.g. stdout+stdout.1+stdout.2 -> stdout)\r\n-   [ ] Create archive from output directory\r\n-   [ ] Add interactive inputs and helpful output to make sure user is running diagnostics against the right cluster/service\r\n\r\nStill want to do before merging the PR:\r\n\r\n-   [ ] Provide command so that people can run something like (maybe provide a wrapper script?):\r\n\r\n    ```bash\r\n    docker run --rm mpereira/dcos-commons:diagnostics bash -c 'PYTHONPATH=/dcos-commons-dist/testing python3 /dcos-commons-dist/tools/create_service_bundle.py hdfs /data-services/hdfs'\r\n    ```\r\n-   [ ] Add docstrings to functions\r\n-   [ ] Write usage documention\r\n-   [ ] Use argparse\r\n\r\nExample run:\r\n\r\n```text\r\n$ PYTHONPATH=testing ./tools/create_service_bundle.py hdfs /data-services/hdfs\r\n...\r\n(a bunch of output)\r\n...\r\n$ tree hdfs_data-services__hdfs_20180730222531\r\nhdfs_data-services__hdfs_20180730222531\r\n├── dcos_marathon_task_list.json\r\n├── dcos_task.json\r\n├── dcos_version.txt\r\n├── service_configuration.json\r\n├── service_plan_status_deploy.json\r\n├── service_plan_status_recovery.json\r\n├── service_plan_status_replace.json\r\n├── service_pod_status.json\r\n└── tasks\r\n    ├── data-services.hdfs__data-0-node__de194f84-be32-485c-9cd4-f484752b3c78\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   ├── stderr.1\r\n    │   │   ├── stderr.2\r\n    │   │   ├── stderr.3\r\n    │   │   ├── stderr.4\r\n    │   │   ├── stderr.5\r\n    │   │   ├── stderr.6\r\n    │   │   ├── stderr.7\r\n    │   │   ├── stderr.8\r\n    │   │   ├── stderr.9\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       ├── stderr.1\r\n    │       ├── stderr.2\r\n    │       ├── stderr.3\r\n    │       ├── stderr.4\r\n    │       ├── stderr.5\r\n    │       ├── stderr.6\r\n    │       ├── stderr.7\r\n    │       ├── stderr.8\r\n    │       ├── stderr.9\r\n    │       └── stdout\r\n    ├── data-services.hdfs__data-1-node__7ed21542-0d9a-4ed3-b722-1418502329af\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   ├── stderr.1\r\n    │   │   ├── stderr.2\r\n    │   │   ├── stderr.3\r\n    │   │   ├── stderr.4\r\n    │   │   ├── stderr.5\r\n    │   │   ├── stderr.6\r\n    │   │   ├── stderr.7\r\n    │   │   ├── stderr.8\r\n    │   │   ├── stderr.9\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       ├── stderr.1\r\n    │       ├── stderr.2\r\n    │       ├── stderr.3\r\n    │       ├── stderr.4\r\n    │       ├── stderr.5\r\n    │       ├── stderr.6\r\n    │       ├── stderr.7\r\n    │       ├── stderr.8\r\n    │       ├── stderr.9\r\n    │       └── stdout\r\n    ├── data-services.hdfs__data-2-node__d92d7c06-287e-4f8a-abc0-e21df8a1f2d5\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   ├── stderr.1\r\n    │   │   ├── stderr.2\r\n    │   │   ├── stderr.3\r\n    │   │   ├── stderr.4\r\n    │   │   ├── stderr.5\r\n    │   │   ├── stderr.6\r\n    │   │   ├── stderr.7\r\n    │   │   ├── stderr.8\r\n    │   │   ├── stderr.9\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       ├── stderr.1\r\n    │       ├── stderr.2\r\n    │       ├── stderr.3\r\n    │       ├── stderr.4\r\n    │       ├── stderr.5\r\n    │       ├── stderr.6\r\n    │       ├── stderr.7\r\n    │       ├── stderr.8\r\n    │       ├── stderr.9\r\n    │       └── stdout\r\n    ├── data-services.hdfs__journal-0-node__0cdab3d7-4710-4af7-adfe-46e49c07e60d\r\n    ├── data-services.hdfs__journal-1-node__45c970b0-d91b-4c98-a7d6-71832acdea42\r\n    ├── data-services.hdfs__journal-1-node__ef679bae-6e04-45bd-a68e-9b655c9992a1\r\n    ├── data-services.hdfs__journal-2-node__5c860fd8-0e89-4a14-9f8f-f40cc1f835aa\r\n    ├── data-services.hdfs__name-0-node__370fa32f-ea99-443e-8e52-720cb3d9d67c\r\n    ├── data-services.hdfs__name-0-zkfc__461ccd17-dbfd-439d-bd7e-0f55ffadb096\r\n    ├── data-services_hdfs.942d286b-90c3-11e8-bb4f-4aed11d552b2\r\n    ├── journal-0-node__95cd3ae4-7127-48ee-b358-965895706454\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       ├── stderr.1\r\n    │       ├── stderr.2\r\n    │       └── stdout\r\n    ├── journal-1-node__3eb48744-24a7-48d5-a619-4f8ffb95dd8a\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       └── stdout\r\n    ├── journal-2-node__d5c3ecef-6fb0-41df-a8b0-a24e8fad7388\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       ├── stderr.1\r\n    │       ├── stderr.2\r\n    │       └── stdout\r\n    ├── name-0-node__4dabc9fc-2d29-4dae-9674-a9f83f20264d\r\n    │   ├── executor\r\n    │   │   ├── stderr\r\n    │   │   ├── stderr.1\r\n    │   │   └── stdout\r\n    │   └── task\r\n    │       ├── stderr\r\n    │       ├── stderr.1\r\n    │       ├── stderr.2\r\n    │       ├── stderr.3\r\n    │       ├── stderr.4\r\n    │       ├── stderr.5\r\n    │       ├── stderr.6\r\n    │       ├── stderr.7\r\n    │       ├── stderr.8\r\n    │       └── stdout\r\n    └── name-0-zkfc__e5def1db-75f0-466b-9131-e107784f25b5\r\n        ├── executor\r\n        │   ├── stderr\r\n        │   └── stdout\r\n        └── task\r\n            ├── stderr\r\n            ├── stderr.1\r\n            ├── stderr.2\r\n            ├── stderr.3\r\n            ├── stderr.4\r\n            ├── stderr.5\r\n            ├── stderr.6\r\n            ├── stderr.7\r\n            ├── stderr.8\r\n            └── stdout\r\n\r\n32 directories, 115 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