{"action":"created","comment":{"url":"https://api.github.com/repos/nrc-cnrc/EGSnrc/pulls/comments/202225525","pull_request_review_id":136884440,"id":202225525,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIwMjIyNTUyNQ==","diff_hunk":"@@ -565,11 +565,15 @@ class EGS_CDGEOMETRY_EXPORT EGS_CDGeometry : public EGS_BaseGeometry {\n                 }\n                 // Skip for concave geometries: particles can reenter the CD geometry after leaving.\n                 // Check 2. below will catch these cases.\n-                else if ((ixnew < 0 && tb <= boundaryTolerance) && (bg->isConvex()  &&\n-                         (g[ibase] && g[ibase]->isConvex()))) {\n-                    // (a) is true\n-                    return ixnew;\n-                }\n+                // This follow has been commented out because it fails in cases\n+                // where the inscribe geometries are themselves convex but\n+                // form a concave shape. Instead, just continue to do more checks.\n+//                 else if ((ixnew < 0 && tb <= boundaryTolerance) && (bg->isConvex()  &&\n+//                          (g[ibase] && g[ibase]->isConvex()))) {\n+//                     // (a) is true\n+//                     return ixnew;\n+//                 }","path":"HEN_HOUSE/egs++/geometry/egs_cd_geometry/egs_cd_geometry.h","position":16,"original_position":16,"commit_id":"322b2723fe63d5ef465586785d88ece3c3becd88","original_commit_id":"322b2723fe63d5ef465586785d88ece3c3becd88","user":{"login":"mchamberland","id":1675666,"node_id":"MDQ6VXNlcjE2NzU2NjY=","avatar_url":"https://avatars2.githubusercontent.com/u/1675666?v=4","gravatar_id":"","url":"https://api.github.com/users/mchamberland","html_url":"https://github.com/mchamberland","followers_url":"https://api.github.com/users/mchamberland/followers","following_url":"https://api.github.com/users/mchamberland/following{/other_user}","gists_url":"https://api.github.com/users/mchamberland/gists{/gist_id}","starred_url":"https://api.github.com/users/mchamberland/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mchamberland/subscriptions","organizations_url":"https://api.github.com/users/mchamberland/orgs","repos_url":"https://api.github.com/users/mchamberland/repos","events_url":"https://api.github.com/users/mchamberland/events{/privacy}","received_events_url":"https://api.github.com/users/mchamberland/received_events","type":"User","site_admin":false},"body":"Oh, I think I goofed! My conestack was the only geometry in the simulation, so when a particle exits the smaller cylinder, it leaves the geometry, which is why egs_view can't see anything behind it, I think. If you inscribe the conestack in a box, then it looks fine. My bad!","created_at":"2018-07-13T01:51:11Z","updated_at":"2018-07-13T01:51:11Z","html_url":"https://github.com/nrc-cnrc/EGSnrc/pull/462#discussion_r202225525","pull_request_url":"https://api.github.com/repos/nrc-cnrc/EGSnrc/pulls/462","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/nrc-cnrc/EGSnrc/pulls/comments/202225525"},"html":{"href":"https://github.com/nrc-cnrc/EGSnrc/pull/462#discussion_r202225525"},"pull_request":{"href":"https://api.github.com/repos/nrc-cnrc/EGSnrc/pulls/462"}},"in_reply_to_id":202222438},"pull_request":{"url":"https://api.github.com/repos/nrc-cnrc/EGSnrc/pulls/462","id":201141389,"node_id":"MDExOlB1bGxSZXF1ZXN0MjAxMTQxMzg5","html_url":"https://github.com/nrc-cnrc/EGSnrc/pull/462","diff_url":"https://github.com/nrc-cnrc/EGSnrc/pull/462.diff","patch_url":"https://github.com/nrc-cnrc/EGSnrc/pull/462.patch","issue_url":"https://api.github.com/repos/nrc-cnrc/EGSnrc/issues/462","number":462,"state":"open","locked":false,"title":"Fix #388: concave cd geometry errors","user":{"login":"rtownson","id":13069227,"node_id":"MDQ6VXNlcjEzMDY5MjI3","avatar_url":"https://avatars1.githubusercontent.com/u/13069227?v=4","gravatar_id":"","url":"https://api.github.com/users/rtownson","html_url":"https://github.com/rtownson","followers_url":"https://api.github.com/users/rtownson/followers","following_url":"https://api.github.com/users/rtownson/following{/other_user}","gists_url":"https://api.github.com/users/rtownson/gists{/gist_id}","starred_url":"https://api.github.com/users/rtownson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rtownson/subscriptions","organizations_url":"https://api.github.com/users/rtownson/orgs","repos_url":"https://api.github.com/users/rtownson/repos","events_url":"https://api.github.com/users/rtownson/events{/privacy}","received_events_url":"https://api.github.com/users/rtownson/received_events","type":"User","site_admin":false},"body":"Fix a special case where convex geometries result in a concave cd geometries when combined. This showed up as geometry errors and could be created using a radius-mismatched cylinder and sphere in a cd geometry. Also fix where a small step is taken in cylinder or sphere howfar routines to step by boundaryTolerance/2 instead of boundaryTolerance. This resulted in checks against the boundaryTolerance to fail in the cd geometry.","created_at":"2018-07-12T22:20:26Z","updated_at":"2018-07-13T01:51:11Z","closed_at":null,"merged_at":null,"merge_commit_sha":"8bc470f6885580f5b3d8cdd6ac78dde5e14d8e14","assignee":{"login":"rtownson","id":13069227,"node_id":"MDQ6VXNlcjEzMDY5MjI3","avatar_url":"https://avatars1.githubusercontent.com/u/13069227?v=4","gravatar_id":"","url":"https://api.github.com/users/rtownson","html_url":"https://github.com/rtownson","followers_url":"https://api.github.com/users/rtownson/followers","following_url":"https://api.github.com/users/rtownson/following{/other_user}","gists_url":"https://api.github.com/users/rtownson/gists{/gist_id}","starred_url":"https://api.github.com/users/rtownson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rtownson/subscriptions","organizations_url":"https://api.github.com/users/rtownson/orgs","repos_url":"https://api.github.com/users/rtownson/repos","events_url":"https://api.github.com/users/rtownson/events{/privacy}","received_events_url":"https://api.github.com/users/rtownson/received_events","type":"User","site_admin":false},"assignees":[{"login":"rtownson","id":13069227,"node_id":"MDQ6VXNlcjEzMDY5MjI3","avatar_url":"https://avatars1.githubusercontent.com/u/13069227?v=4","gravatar_id":"","url":"https://api.github.com/users/rtownson","html_url":"https://github.com/rtownson","followers_url":"https://api.github.com/users/rtownson/followers","following_url":"https://api.github.com/users/rtownson/following{/other_user}","gists_url":"https://api.github.com/users/rtownson/gists{/gist_id}","starred_url":"https://api.github.com/users/rtownson/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rtownson/subscriptions","organizations_url":"https://api.github.com/users/rtownson/orgs","repos_url":"https://api.github.com/users/rtownson/repos","events_url":"https://api.github.com/users/rtownson/events{/privacy}","received_events_url":"https://api.github.com/users/rtownson/received_events","type":"User","site_admin":false}],"requested_reviewers":[{"login":"ftessier","id":1444241,"node_id":"MDQ6VXNlcjE0NDQyNDE=","avatar_url":"https://avatars0.githubusercontent.com/u/1444241?v=4","gravatar_id":"","url":"https://api.github.com/users/ftessier","html_url":"https://github.com/ftessier","followers_url":"https://api.github.com/users/ftessier/followers","following_url":"https://api.github.com/users/ftessier/following{/other_user}","gists_url":"https://api.github.com/users/ftessier/gists{/gist_id}","starred_url":"https://api.github.com/users/ftessier/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ftessier/subscriptions","organizations_url":"https://api.github.com/users/ftessier/orgs","repos_url":"https://api.github.com/users/ftessier/repos","events_url":"https://api.github.com/users/ftessier/events{/privacy}","received_events_url":"https://api.github.com/users/ftessier/received_events","type":"User","site_admin":false},{"login":"mainegra","id":1971406,"node_id":"MDQ6VXNlcjE5NzE0MDY=","avatar_url":"https://avatars1.githubusercontent.com/u/1971406?v=4","gravatar_id":"","url":"https://api.github.com/users/mainegra","html_url":"https://github.com/mainegra","followers_url":"https://api.github.com/users/mainegra/followers","following_url":"https://api.github.com/users/mainegra/following{/other_user}","gists_url":"https://api.github.com/users/mainegra/gists{/gist_id}","starred_url":"https://api.github.com/users/mainegra/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mainegra/subscriptions","organizations_url":"https://api.github.com/users/mainegra/orgs","repos_url":"https://api.github.com/users/mainegra/repos","events_url":"https://api.github.com/users/mainegra/events{/privacy}","received_events_url":"https://api.github.com/users/mainegra/received_events","type":"User","site_admin":false},{"login":"blakewalters","id":14313534,"node_id":"MDQ6VXNlcjE0MzEzNTM0","avatar_url":"https://avatars3.githubusercontent.com/u/14313534?v=4","gravatar_id":"","url":"https://api.github.com/users/blakewalters","html_url":"https://github.com/blakewalters","followers_url":"https://api.github.com/users/blakewalters/followers","following_url":"https://api.github.com/users/blakewalters/following{/other_user}","gists_url":"https://api.github.com/users/blakewalters/gists{/gist_id}","starred_url":"https://api.github.com/users/blakewalters/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/blakewalters/subscriptions","organizations_url":"https://api.github.com/users/blakewalters/orgs","repos_url":"https://api.github.com/users/blakewalters/repos","events_url":"https://api.github.com/users/blakewalters/events{/privacy}","received_events_url":"https://api.github.com/users/blakewalters/received_events","type":"User","site_admin":false}],"requested_teams":[],"labels":[{"id":20611374,"node_id":"MDU6TGFiZWwyMDYxMTM3NA==","url":"https://api.github.com/repos/nrc-cnrc/EGSnrc/labels/bug","name":"bug","color":"ff0000","defau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