{"action":"created","issue":{"url":"https://api.github.com/repos/RTXteam/RTX/issues/284","repository_url":"https://api.github.com/repos/RTXteam/RTX","labels_url":"https://api.github.com/repos/RTXteam/RTX/issues/284/labels{/name}","comments_url":"https://api.github.com/repos/RTXteam/RTX/issues/284/comments","events_url":"https://api.github.com/repos/RTXteam/RTX/issues/284/events","html_url":"https://github.com/RTXteam/RTX/issues/284","id":361490814,"node_id":"MDU6SXNzdWUzNjE0OTA4MTQ=","number":284,"title":"Write question \"solution scripts\" for COHD endpoints","user":{"login":"dkoslicki","id":6362936,"node_id":"MDQ6VXNlcjYzNjI5MzY=","avatar_url":"https://avatars1.githubusercontent.com/u/6362936?v=4","gravatar_id":"","url":"https://api.github.com/users/dkoslicki","html_url":"https://github.com/dkoslicki","followers_url":"https://api.github.com/users/dkoslicki/followers","following_url":"https://api.github.com/users/dkoslicki/following{/other_user}","gists_url":"https://api.github.com/users/dkoslicki/gists{/gist_id}","starred_url":"https://api.github.com/users/dkoslicki/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dkoslicki/subscriptions","organizations_url":"https://api.github.com/users/dkoslicki/orgs","repos_url":"https://api.github.com/users/dkoslicki/repos","events_url":"https://api.github.com/users/dkoslicki/events{/privacy}","received_events_url":"https://api.github.com/users/dkoslicki/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"DeqingQu","id":2810578,"node_id":"MDQ6VXNlcjI4MTA1Nzg=","avatar_url":"https://avatars3.githubusercontent.com/u/2810578?v=4","gravatar_id":"","url":"https://api.github.com/users/DeqingQu","html_url":"https://github.com/DeqingQu","followers_url":"https://api.github.com/users/DeqingQu/followers","following_url":"https://api.github.com/users/DeqingQu/following{/other_user}","gists_url":"https://api.github.com/users/DeqingQu/gists{/gist_id}","starred_url":"https://api.github.com/users/DeqingQu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/DeqingQu/subscriptions","organizations_url":"https://api.github.com/users/DeqingQu/orgs","repos_url":"https://api.github.com/users/DeqingQu/repos","events_url":"https://api.github.com/users/DeqingQu/events{/privacy}","received_events_url":"https://api.github.com/users/DeqingQu/received_events","type":"User","site_admin":false},"assignees":[{"login":"DeqingQu","id":2810578,"node_id":"MDQ6VXNlcjI4MTA1Nzg=","avatar_url":"https://avatars3.githubusercontent.com/u/2810578?v=4","gravatar_id":"","url":"https://api.github.com/users/DeqingQu","html_url":"https://github.com/DeqingQu","followers_url":"https://api.github.com/users/DeqingQu/followers","following_url":"https://api.github.com/users/DeqingQu/following{/other_user}","gists_url":"https://api.github.com/users/DeqingQu/gists{/gist_id}","starred_url":"https://api.github.com/users/DeqingQu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/DeqingQu/subscriptions","organizations_url":"https://api.github.com/users/DeqingQu/orgs","repos_url":"https://api.github.com/users/DeqingQu/repos","events_url":"https://api.github.com/users/DeqingQu/events{/privacy}","received_events_url":"https://api.github.com/users/DeqingQu/received_events","type":"User","site_admin":false},{"login":"finnagin","id":20198864,"node_id":"MDQ6VXNlcjIwMTk4ODY0","avatar_url":"https://avatars1.githubusercontent.com/u/20198864?v=4","gravatar_id":"","url":"https://api.github.com/users/finnagin","html_url":"https://github.com/finnagin","followers_url":"https://api.github.com/users/finnagin/followers","following_url":"https://api.github.com/users/finnagin/following{/other_user}","gists_url":"https://api.github.com/users/finnagin/gists{/gist_id}","starred_url":"https://api.github.com/users/finnagin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/finnagin/subscriptions","organizations_url":"https://api.github.com/users/finnagin/orgs","repos_url":"https://api.github.com/users/finnagin/repos","events_url":"https://api.github.com/users/finnagin/events{/privacy}","received_events_url":"https://api.github.com/users/finnagin/received_events","type":"User","site_admin":false}],"milestone":null,"comments":4,"created_at":"2018-09-18T21:26:38Z","updated_at":"2018-11-05T20:55:32Z","closed_at":null,"author_association":"MEMBER","body":"Currently, we are not exposing @DeqingQu's COHD code to the reasoning interface. Similar to [CommonlyTreatsSolution.py](https://github.com/RTXteam/RTX/blob/master/code/reasoningtool/QuestionAnswering/CommonlyTreatsSolution.py), we need python scripts that _answer biological questions while leveraging COHD data_.\r\n\r\n1. Take as input nodes/node types/edges/edge types from our KG\r\n2. Query COHD to answer the question\r\n3. convert identifiers to things in our KG\r\n4. Format the output in the JSON output specification\r\n\r\nIt would be good to interface with Casey Ta about the kinds of biological questions that can be answered with COHD."},"comment":{"url":"https://api.github.com/repos/RTXteam/RTX/issues/comments/436031380","html_url":"https://github.com/RTXteam/RTX/issues/284#issuecomment-436031380","issue_url":"https://api.github.com/repos/RTXteam/RTX/issues/284","id":436031380,"node_id":"MDEyOklzc3VlQ29tbWVudDQzNjAzMTM4MA==","user":{"login":"saramsey","id":5562107,"node_id":"MDQ6VXNlcjU1NjIxMDc=","avatar_url":"https://avatars2.githubusercontent.com/u/5562107?v=4","gravatar_id":"","url":"https://api.github.com/users/saramsey","html_url":"https://github.com/saramsey","followers_url":"https://api.github.com/users/saramsey/followers","following_url":"https://api.github.com/users/saramsey/following{/other_user}","gists_url":"https://api.github.com/users/saramsey/gists{/gist_id}","starred_url":"https://api.github.com/users/saramsey/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/saramsey/subscriptions","organizations_url":"https://api.github.com/users/saramsey/orgs","repos_url":"https://api.github.com/users/saramsey/repos","events_url":"https://api.github.com/users/saramsey/events{/privacy}","received_events_url":"https://api.github.com/users/saramsey/received_events","type":"User","site_admin":false},"created_at":"2018-11-05T20:55:32Z","updated_at":"2018-11-05T20:55:32Z","author_association":"MEMBER","body":"what's the status of this?  can we close the issue?"}}
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