{"action":"closed","issue":{"url":"https://api.github.com/repos/ozagordi/MinVar/issues/25","repository_url":"https://api.github.com/repos/ozagordi/MinVar","labels_url":"https://api.github.com/repos/ozagordi/MinVar/issues/25/labels{/name}","comments_url":"https://api.github.com/repos/ozagordi/MinVar/issues/25/comments","events_url":"https://api.github.com/repos/ozagordi/MinVar/issues/25/events","html_url":"https://github.com/ozagordi/MinVar/issues/25","id":342267324,"node_id":"MDU6SXNzdWUzNDIyNjczMjQ=","number":25,"title":"Error in reporting unannotated mutations","user":{"login":"ozagordi","id":2485331,"node_id":"MDQ6VXNlcjI0ODUzMzE=","avatar_url":"https://avatars3.githubusercontent.com/u/2485331?v=4","gravatar_id":"","url":"https://api.github.com/users/ozagordi","html_url":"https://github.com/ozagordi","followers_url":"https://api.github.com/users/ozagordi/followers","following_url":"https://api.github.com/users/ozagordi/following{/other_user}","gists_url":"https://api.github.com/users/ozagordi/gists{/gist_id}","starred_url":"https://api.github.com/users/ozagordi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ozagordi/subscriptions","organizations_url":"https://api.github.com/users/ozagordi/orgs","repos_url":"https://api.github.com/users/ozagordi/repos","events_url":"https://api.github.com/users/ozagordi/events{/privacy}","received_events_url":"https://api.github.com/users/ozagordi/received_events","type":"User","site_admin":false},"labels":[{"id":133666055,"node_id":"MDU6TGFiZWwxMzM2NjYwNTU=","url":"https://api.github.com/repos/ozagordi/MinVar/labels/bug","name":"bug","color":"fc2929","default":true}],"state":"closed","locked":false,"assignee":{"login":"ozagordi","id":2485331,"node_id":"MDQ6VXNlcjI0ODUzMzE=","avatar_url":"https://avatars3.githubusercontent.com/u/2485331?v=4","gravatar_id":"","url":"https://api.github.com/users/ozagordi","html_url":"https://github.com/ozagordi","followers_url":"https://api.github.com/users/ozagordi/followers","following_url":"https://api.github.com/users/ozagordi/following{/other_user}","gists_url":"https://api.github.com/users/ozagordi/gists{/gist_id}","starred_url":"https://api.github.com/users/ozagordi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ozagordi/subscriptions","organizations_url":"https://api.github.com/users/ozagordi/orgs","repos_url":"https://api.github.com/users/ozagordi/repos","events_url":"https://api.github.com/users/ozagordi/events{/privacy}","received_events_url":"https://api.github.com/users/ozagordi/received_events","type":"User","site_admin":false},"assignees":[{"login":"ozagordi","id":2485331,"node_id":"MDQ6VXNlcjI0ODUzMzE=","avatar_url":"https://avatars3.githubusercontent.com/u/2485331?v=4","gravatar_id":"","url":"https://api.github.com/users/ozagordi","html_url":"https://github.com/ozagordi","followers_url":"https://api.github.com/users/ozagordi/followers","following_url":"https://api.github.com/users/ozagordi/following{/other_user}","gists_url":"https://api.github.com/users/ozagordi/gists{/gist_id}","starred_url":"https://api.github.com/users/ozagordi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ozagordi/subscriptions","organizations_url":"https://api.github.com/users/ozagordi/orgs","repos_url":"https://api.github.com/users/ozagordi/repos","events_url":"https://api.github.com/users/ozagordi/events{/privacy}","received_events_url":"https://api.github.com/users/ozagordi/received_events","type":"User","site_admin":false}],"milestone":null,"comments":0,"created_at":"2018-07-18T10:21:51Z","updated_at":"2018-07-18T12:10:46Z","closed_at":"2018-07-18T12:10:46Z","author_association":"OWNER","body":"The function `parse_merged` in `reportdrm.py` is outdated. It doesn't adapt well to the new format of \r\n[comment files](https://github.com/ozagordi/MinVar/blob/master/src/minvar/db/HIV/masterComments_PI.txt)\r\nfrom HIVdb. In HIVdb version 8.4, the mutations are not listed like `NOT LVMT` anymore.\r\n\r\nThis results in not reporting some mutations like L89M on protease, or other unannotated mutations."}}
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