{"action":"created","issue":{"url":"https://api.github.com/repos/dozmorovlab/HiCcompare/issues/5","repository_url":"https://api.github.com/repos/dozmorovlab/HiCcompare","labels_url":"https://api.github.com/repos/dozmorovlab/HiCcompare/issues/5/labels{/name}","comments_url":"https://api.github.com/repos/dozmorovlab/HiCcompare/issues/5/comments","events_url":"https://api.github.com/repos/dozmorovlab/HiCcompare/issues/5/events","html_url":"https://github.com/dozmorovlab/HiCcompare/issues/5","id":351427636,"node_id":"MDU6SXNzdWUzNTE0Mjc2MzY=","number":5,"title":"the data is mismatch?","user":{"login":"RuiqinZheng","id":20592197,"node_id":"MDQ6VXNlcjIwNTkyMTk3","avatar_url":"https://avatars1.githubusercontent.com/u/20592197?v=4","gravatar_id":"","url":"https://api.github.com/users/RuiqinZheng","html_url":"https://github.com/RuiqinZheng","followers_url":"https://api.github.com/users/RuiqinZheng/followers","following_url":"https://api.github.com/users/RuiqinZheng/following{/other_user}","gists_url":"https://api.github.com/users/RuiqinZheng/gists{/gist_id}","starred_url":"https://api.github.com/users/RuiqinZheng/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/RuiqinZheng/subscriptions","organizations_url":"https://api.github.com/users/RuiqinZheng/orgs","repos_url":"https://api.github.com/users/RuiqinZheng/repos","events_url":"https://api.github.com/users/RuiqinZheng/events{/privacy}","received_events_url":"https://api.github.com/users/RuiqinZheng/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":5,"created_at":"2018-08-17T01:40:23Z","updated_at":"2018-08-17T01:59:58Z","closed_at":null,"author_association":"NONE","body":"> head(HMEC.chr22)\r\n   region1  region2   IF\r\n1 16000000 16000000    5\r\n2 16000000 16500000    2\r\n3 16500000 16500000  297\r\n4 16000000 17000000    5\r\n5 16500000 17000000   92\r\n6 17000000 17000000 5690\r\n\r\n> head(NHEK.chr22)\r\n   region1  region2    IF\r\n1 16000000 16000000     6\r\n2 16000000 16500000    10\r\n3 16500000 16500000   554\r\n4 16000000 17000000    17\r\n5 16500000 17000000   320\r\n6 17000000 17000000 10880\r\n> head(chr22.table)\r\n    chr1   start1     end1  chr2   start2     end2  IF1         IF2 D\r\n1: chr22 16000000 16500000 chr22 16000000 16500000    5    5.203323 0\r\n2: chr22 16000000 16500000 chr22 16500000 17000000    2    8.672206 1\r\n3: chr22 16500000 17000000 chr22 16500000 17000000  297  480.440193 0\r\n4: chr22 16000000 16500000 chr22 17000000 17500000    5   14.742750 2\r\n5: chr22 16500000 17000000 chr22 17000000 17500000   92  277.510581 1\r\n6: chr22 17000000 17500000 chr22 17000000 17500000 5690 9435.359752 0\r\n            M\r\n1: 0.05750528\r\n2: 2.11639897\r\n3: 0.69389392\r\n4: 1.56000562\r\n5: 1.59283701\r\n6: 0.72964887\r\n\r\nyou see ,1) the original IF2 should be 6,but why the IF2 is 5.203323 in hic.table?\r\n2) in my own data \r\nthe first row of first data is:\r\n1\t1\t624.0\r\nthe first row of second data is:\r\n1\t1\t821.0\r\nbut why in the hic.table like this?\r\n   chr1 start1 end1 chr2 start2 end2  IF1       IF2 D            M   \r\n1: chr1      1    2 chr1      1    2  **624  572.9156 0** -0.123223336 \r\nDoes the software have do something when I use create.hic.table?\r\nanother question is  can I use this package to caculate inter-chromosme different interacion?\r\nBest Wishes~\r\nThanks a lot! "},"comment":{"url":"https://api.github.com/repos/dozmorovlab/HiCcompare/issues/comments/413735425","html_url":"https://github.com/dozmorovlab/HiCcompare/issues/5#issuecomment-413735425","issue_url":"https://api.github.com/repos/dozmorovlab/HiCcompare/issues/5","id":413735425,"node_id":"MDEyOklzc3VlQ29tbWVudDQxMzczNTQyNQ==","user":{"login":"RuiqinZheng","id":20592197,"node_id":"MDQ6VXNlcjIwNTkyMTk3","avatar_url":"https://avatars1.githubusercontent.com/u/20592197?v=4","gravatar_id":"","url":"https://api.github.com/users/RuiqinZheng","html_url":"https://github.com/RuiqinZheng","followers_url":"https://api.github.com/users/RuiqinZheng/followers","following_url":"https://api.github.com/users/RuiqinZheng/following{/other_user}","gists_url":"https://api.github.com/users/RuiqinZheng/gists{/gist_id}","starred_url":"https://api.github.com/users/RuiqinZheng/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/RuiqinZheng/subscriptions","organizations_url":"https://api.github.com/users/RuiqinZheng/orgs","repos_url":"https://api.github.com/users/RuiqinZheng/repos","events_url":"https://api.github.com/users/RuiqinZheng/events{/privacy}","received_events_url":"https://api.github.com/users/RuiqinZheng/received_events","type":"User","site_admin":false},"created_at":"2018-08-17T01:59:58Z","updated_at":"2018-08-17T01:59:58Z","author_association":"NONE","body":"OK! Thanks a lot !"}}
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