{"action":"created","issue":{"url":"https://api.github.com/repos/openjournals/joss-reviews/issues/1077","repository_url":"https://api.github.com/repos/openjournals/joss-reviews","labels_url":"https://api.github.com/repos/openjournals/joss-reviews/issues/1077/labels{/name}","comments_url":"https://api.github.com/repos/openjournals/joss-reviews/issues/1077/comments","events_url":"https://api.github.com/repos/openjournals/joss-reviews/issues/1077/events","html_url":"https://github.com/openjournals/joss-reviews/issues/1077","id":379584792,"node_id":"MDU6SXNzdWUzNzk1ODQ3OTI=","number":1077,"title":"[REVIEW]: iRF: Extracting interactions from random forests","user":{"login":"whedon","id":18508068,"node_id":"MDQ6VXNlcjE4NTA4MDY4","avatar_url":"https://avatars3.githubusercontent.com/u/18508068?v=4","gravatar_id":"","url":"https://api.github.com/users/whedon","html_url":"https://github.com/whedon","followers_url":"https://api.github.com/users/whedon/followers","following_url":"https://api.github.com/users/whedon/following{/other_user}","gists_url":"https://api.github.com/users/whedon/gists{/gist_id}","starred_url":"https://api.github.com/users/whedon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/whedon/subscriptions","organizations_url":"https://api.github.com/users/whedon/orgs","repos_url":"https://api.github.com/users/whedon/repos","events_url":"https://api.github.com/users/whedon/events{/privacy}","received_events_url":"https://api.github.com/users/whedon/received_events","type":"User","site_admin":false},"labels":[{"id":330465313,"node_id":"MDU6TGFiZWwzMzA0NjUzMTM=","url":"https://api.github.com/repos/openjournals/joss-reviews/labels/review","name":"review","color":"fbca04","default":false}],"state":"open","locked":false,"assignee":{"login":"arokem","id":118582,"node_id":"MDQ6VXNlcjExODU4Mg==","avatar_url":"https://avatars1.githubusercontent.com/u/118582?v=4","gravatar_id":"","url":"https://api.github.com/users/arokem","html_url":"https://github.com/arokem","followers_url":"https://api.github.com/users/arokem/followers","following_url":"https://api.github.com/users/arokem/following{/other_user}","gists_url":"https://api.github.com/users/arokem/gists{/gist_id}","starred_url":"https://api.github.com/users/arokem/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arokem/subscriptions","organizations_url":"https://api.github.com/users/arokem/orgs","repos_url":"https://api.github.com/users/arokem/repos","events_url":"https://api.github.com/users/arokem/events{/privacy}","received_events_url":"https://api.github.com/users/arokem/received_events","type":"User","site_admin":false},"assignees":[{"login":"arokem","id":118582,"node_id":"MDQ6VXNlcjExODU4Mg==","avatar_url":"https://avatars1.githubusercontent.com/u/118582?v=4","gravatar_id":"","url":"https://api.github.com/users/arokem","html_url":"https://github.com/arokem","followers_url":"https://api.github.com/users/arokem/followers","following_url":"https://api.github.com/users/arokem/following{/other_user}","gists_url":"https://api.github.com/users/arokem/gists{/gist_id}","starred_url":"https://api.github.com/users/arokem/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arokem/subscriptions","organizations_url":"https://api.github.com/users/arokem/orgs","repos_url":"https://api.github.com/users/arokem/repos","events_url":"https://api.github.com/users/arokem/events{/privacy}","received_events_url":"https://api.github.com/users/arokem/received_events","type":"User","site_admin":false}],"milestone":null,"comments":20,"created_at":"2018-11-12T00:56:07Z","updated_at":"2018-11-13T23:41:05Z","closed_at":null,"author_association":"COLLABORATOR","body":"**Submitting author:** @karlkumbier (<a href=\"http://orcid.org/0000-0001-6521-1173\">Karl Kumbier</a>)\n**Repository:** <a href=\"https://github.com/sumbose/iRF\" target =\"_blank\">https://github.com/sumbose/iRF</a>\n**Version:** v2.0.0\n**Editor:** @arokem\n**Reviewer:** @road2stat\n**Archive:** Pending\n\n## Status\n\n[![status](http://joss.theoj.org/papers/738f76b688795eb6014caae8ef19ca4a/status.svg)](http://joss.theoj.org/papers/738f76b688795eb6014caae8ef19ca4a)\n\nStatus badge code:\n\n```\nHTML: <a href=\"http://joss.theoj.org/papers/738f76b688795eb6014caae8ef19ca4a\"><img src=\"http://joss.theoj.org/papers/738f76b688795eb6014caae8ef19ca4a/status.svg\"></a>\nMarkdown: [![status](http://joss.theoj.org/papers/738f76b688795eb6014caae8ef19ca4a/status.svg)](http://joss.theoj.org/papers/738f76b688795eb6014caae8ef19ca4a)\n```\n**Reviewers and authors**:\n\nPlease avoid lengthy details of difficulties in the review thread. Instead, please create a new issue in the <a href=\"https://github.com/sumbose/iRF\" target=\"_blank\">target repository</a> and link to those issues (especially acceptance-blockers) in the review thread below. (For completists: if the target issue tracker is also on GitHub, linking the review thread in the issue or vice versa will create corresponding breadcrumb trails in the link target.)\n\n## Reviewer instructions & questions\n\n@road2stat, please carry out your review in this issue by updating the checklist below. If you cannot edit the checklist please:\n1. Make sure you're logged in to your GitHub account\n2. Be sure to accept the invite at this URL: https://github.com/openjournals/joss-reviews/invitations\n\nThe reviewer guidelines are available here: https://joss.theoj.org/about#reviewer_guidelines. Any questions/concerns please let @arokem know.\n\n✨ **Please try and complete your review in the next two weeks** ✨ \n\n## Review checklist for @road2stat\n### Conflict of interest\n\n- [x] As the reviewer I confirm that I have read the [JOSS conflict of interest policy](https://github.com/openjournals/joss/blob/master/COI.md) and that there are no conflicts of interest for me to review this work.\n\n### Code of Conduct\n\n- [x] I confirm that I read and will adhere to the [JOSS code of conduct](https://joss.theoj.org/about#code_of_conduct).\n\n### General checks\n\n- [x] **Repository:** Is the source code for this software available at the <a target=\"_blank\" href=\"https://github.com/sumbose/iRF\">repository url</a>?\n- [x] **License:** Does the repository contain a plain-text LICENSE file with the contents of an [OSI approved](https://opensource.org/licenses/alphabetical) software license?\n- [x] **Version:** Does the release version given match the GitHub release (v2.0.0)?\n- [x] **Authorship:** Has the submitting author (@karlkumbier) made major contributions to the software? Does the full list of paper authors seem appropriate and complete?\n\n### Functionality\n\n- [ ] **Installation:** Does installation proceed as outlined in the documentation?\n- [ ] **Functionality:** Have the functional claims of the software been confirmed?\n- [ ] **Performance:** If there are any performance claims of the software, have they been confirmed? (If there are no claims, please check off this item.)\n\n### Documentation\n\n- [x] **A statement of need:** Do the authors clearly state what problems the software is designed to solve and who the target audience is?\n- [ ] **Installation instructions:** Is there a clearly-stated list of dependencies? Ideally these should be handled with an automated package management solution.\n- [ ] **Example usage:** Do the authors include examples of how to use the software (ideally to solve real-world analysis problems).\n- [ ] **Functionality documentation:** Is the core functionality of the software documented to a satisfactory level (e.g., API method documentation)?\n- [ ] **Automated tests:** Are there automated tests or manual steps described so that the function of the software can be verified?\n- [ ] **Community guidelines:** Are there clear guidelines for third parties wishing to 1) Contribute to the software 2) Report issues or problems with the software 3) Seek support\n\n### Software paper\n\n- [ ] **Authors:** Does the `paper.md` file include a list of authors with their affiliations?\n- [x] **A statement of need:** Do the authors clearly state what problems the software is designed to solve and who the target audience is?\n- [ ] **References:** Do all archival references that should have a DOI list one (e.g., papers, datasets, software)?\n\n"},"comment":{"url":"https://api.github.com/repos/openjournals/joss-reviews/issues/comments/438480972","html_url":"https://github.com/openjournals/joss-reviews/issues/1077#issuecomment-438480972","issue_url":"https://api.github.com/repos/openjournals/joss-reviews/issues/1077","id":438480972,"node_id":"MDEyOklzc3VlQ29tbWVudDQzODQ4MDk3Mg==","user":{"login":"whedon","id":18508068,"node_id":"MDQ6VXNlcjE4NTA4MDY4","avatar_url":"https://avatars3.githubusercontent.com/u/18508068?v=4","gravatar_id":"","url":"https://api.github.com/users/whedon","html_url":"https://github.com/whedon","followers_url":"https://api.github.com/users/whedon/followers","following_url":"https://api.github.com/users/whedon/following{/other_user}","gists_url":"https://api.github.com/users/whedon/gists{/gist_id}","starred_url":"https://api.github.com/users/whedon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/whedon/subscriptions","organizations_url":"https://api.github.com/users/whedon/orgs","repos_url":"https://api.github.com/users/whedon/repos","events_url":"https://api.github.com/users/whedon/events{/privacy}","received_events_url":"https://api.github.com/users/whedon/received_events","type":"User","site_admin":false},"created_at":"2018-11-13T23:41:05Z","updated_at":"2018-11-13T23:41:05Z","author_association":"COLLABORATOR","body":"PDF failed to compile for issue #1077 with the following error: \n\n /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon/author.rb:58:in `block in build_affiliation_string': Problem with affiliations for Sumanta Basu, perhaps the affiliations index need quoting? (RuntimeError)\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon/author.rb:57:in `each'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon/author.rb:57:in `build_affiliation_string'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon/author.rb:17:in `initialize'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon.rb:109:in `new'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon.rb:109:in `block in parse_authors'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon.rb:106:in `each'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon.rb:106:in `parse_authors'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon.rb:73:in `initialize'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon/processor.rb:32:in `new'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/lib/whedon/processor.rb:32:in `set_paper'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/bin/whedon:52:in `prepare'\n\tfrom /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.0/lib/thor/command.rb:27:in `run'\n\tfrom /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.0/lib/thor/invocation.rb:126:in `invoke_command'\n\tfrom /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.0/lib/thor.rb:387:in `dispatch'\n\tfrom /app/vendor/bundle/ruby/2.4.0/gems/thor-0.20.0/lib/thor/base.rb:466:in `start'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bundler/gems/whedon-b79e4e9c8e4d/bin/whedon:113:in `<top (required)>'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in `load'\n\tfrom /app/vendor/bundle/ruby/2.4.0/bin/whedon:23:in `<main>'\n"}}
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