{"action":"created","issue":{"url":"https://api.github.com/repos/YosefLab/scVI/issues/242","repository_url":"https://api.github.com/repos/YosefLab/scVI","labels_url":"https://api.github.com/repos/YosefLab/scVI/issues/242/labels{/name}","comments_url":"https://api.github.com/repos/YosefLab/scVI/issues/242/comments","events_url":"https://api.github.com/repos/YosefLab/scVI/issues/242/events","html_url":"https://github.com/YosefLab/scVI/issues/242","id":389605016,"node_id":"MDU6SXNzdWUzODk2MDUwMTY=","number":242,"title":"compatibility issue with torch 1.0.0 and GPU?","user":{"login":"byoo","id":1112598,"node_id":"MDQ6VXNlcjExMTI1OTg=","avatar_url":"https://avatars1.githubusercontent.com/u/1112598?v=4","gravatar_id":"","url":"https://api.github.com/users/byoo","html_url":"https://github.com/byoo","followers_url":"https://api.github.com/users/byoo/followers","following_url":"https://api.github.com/users/byoo/following{/other_user}","gists_url":"https://api.github.com/users/byoo/gists{/gist_id}","starred_url":"https://api.github.com/users/byoo/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/byoo/subscriptions","organizations_url":"https://api.github.com/users/byoo/orgs","repos_url":"https://api.github.com/users/byoo/repos","events_url":"https://api.github.com/users/byoo/events{/privacy}","received_events_url":"https://api.github.com/users/byoo/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"jules-samaran","id":42657542,"node_id":"MDQ6VXNlcjQyNjU3NTQy","avatar_url":"https://avatars2.githubusercontent.com/u/42657542?v=4","gravatar_id":"","url":"https://api.github.com/users/jules-samaran","html_url":"https://github.com/jules-samaran","followers_url":"https://api.github.com/users/jules-samaran/followers","following_url":"https://api.github.com/users/jules-samaran/following{/other_user}","gists_url":"https://api.github.com/users/jules-samaran/gists{/gist_id}","starred_url":"https://api.github.com/users/jules-samaran/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jules-samaran/subscriptions","organizations_url":"https://api.github.com/users/jules-samaran/orgs","repos_url":"https://api.github.com/users/jules-samaran/repos","events_url":"https://api.github.com/users/jules-samaran/events{/privacy}","received_events_url":"https://api.github.com/users/jules-samaran/received_events","type":"User","site_admin":false},"assignees":[{"login":"jules-samaran","id":42657542,"node_id":"MDQ6VXNlcjQyNjU3NTQy","avatar_url":"https://avatars2.githubusercontent.com/u/42657542?v=4","gravatar_id":"","url":"https://api.github.com/users/jules-samaran","html_url":"https://github.com/jules-samaran","followers_url":"https://api.github.com/users/jules-samaran/followers","following_url":"https://api.github.com/users/jules-samaran/following{/other_user}","gists_url":"https://api.github.com/users/jules-samaran/gists{/gist_id}","starred_url":"https://api.github.com/users/jules-samaran/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jules-samaran/subscriptions","organizations_url":"https://api.github.com/users/jules-samaran/orgs","repos_url":"https://api.github.com/users/jules-samaran/repos","events_url":"https://api.github.com/users/jules-samaran/events{/privacy}","received_events_url":"https://api.github.com/users/jules-samaran/received_events","type":"User","site_admin":false}],"milestone":null,"comments":6,"created_at":"2018-12-11T05:41:55Z","updated_at":"2018-12-18T01:50:19Z","closed_at":null,"author_association":"NONE","body":"I had trouble following a tutorial using scVI with torch 1.0.0 and GPU.\r\nI played with the basic tutorial and an error occurred in plotting tsne as below. FYI, training with CPU didn't cause the error and it looks to be relevant to this change of pytorch; (https://github.com/pytorch/pytorch/pull/10416).\r\n\r\n\"_can't convert CUDA tensor to numpy. Use Tensor.cpu() to copy the tensor to host memory first._\"\r\nhttps://github.com/YosefLab/scVI/blob/6937e0df9c4b37dad2bc6cef5f2d45f4a9ade656/scvi/inference/posterior.py#L151\r\n\r\nThank you."},"comment":{"url":"https://api.github.com/repos/YosefLab/scVI/issues/comments/448066569","html_url":"https://github.com/YosefLab/scVI/issues/242#issuecomment-448066569","issue_url":"https://api.github.com/repos/YosefLab/scVI/issues/242","id":448066569,"node_id":"MDEyOklzc3VlQ29tbWVudDQ0ODA2NjU2OQ==","user":{"login":"jules-samaran","id":42657542,"node_id":"MDQ6VXNlcjQyNjU3NTQy","avatar_url":"https://avatars2.githubusercontent.com/u/42657542?v=4","gravatar_id":"","url":"https://api.github.com/users/jules-samaran","html_url":"https://github.com/jules-samaran","followers_url":"https://api.github.com/users/jules-samaran/followers","following_url":"https://api.github.com/users/jules-samaran/following{/other_user}","gists_url":"https://api.github.com/users/jules-samaran/gists{/gist_id}","starred_url":"https://api.github.com/users/jules-samaran/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jules-samaran/subscriptions","organizations_url":"https://api.github.com/users/jules-samaran/orgs","repos_url":"https://api.github.com/users/jules-samaran/repos","events_url":"https://api.github.com/users/jules-samaran/events{/privacy}","received_events_url":"https://api.github.com/users/jules-samaran/received_events","type":"User","site_admin":false},"created_at":"2018-12-18T01:50:19Z","updated_at":"2018-12-18T01:50:19Z","author_association":"COLLABORATOR","body":"Thanks a lot for reporting the issue!"}}
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