{"push_id":2871699308,"size":140,"distinct_size":140,"ref":"refs/heads/master","head":"903374f36428aaab94af1ec8590634c1c8a75efd","before":"08f314c902d0c7570129cc62407ad78838ea9d81","commits":[{"sha":"aed8bbd244f384848dd3385836bc4c3e288ef84f","author":{"name":"Christian Brueffer","email":"2314b2e3a4a1f7db165be2aafbf1efd78f28cc97@brueffer.io"},"message":"Update Picard to 2.18.12. (#10749)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/aed8bbd244f384848dd3385836bc4c3e288ef84f"},{"sha":"c1a7153629f0a0ff036b115184ea39a9e191d89f","author":{"name":"Rob Patro","email":"ba5b01010eb740c24a404fb3b124d01c240dfeb9@users.noreply.github.com"},"message":"Salmon gcc7 (#10344)\n\nThis was a *very* long time coming, but salmon now builds under the new (cb3) compilers.  There *is* an issue with c++11/14 compatibility of the default (conda-forge) boost libraries, so we pull in `libboost` here for now to address this.  Hopefully, in the future, we can revert back to the plain `boost` deps.\r\n\r\n* try new compiler\r\n\r\n* commit build_config.yaml\r\n\r\n* Update meta.yaml\r\n\r\nTry building on OSX\r\n\r\n* Update build_config.yaml\r\n\r\ntrying GCC/GXX even on Mac\r\n\r\n* Rename build_config.yaml to conda_build_config.yaml\r\n\r\n* pinning\r\n\r\n* pinning\r\n\r\n* boost => boost-cpp\r\n\r\n* boost => boost-cpp\r\n\r\n* boost => boost-cpp\r\n\r\n* boost => boost-cpp\r\n\r\n* boost => boost-cpp\r\n\r\n* boost => boost-cpp\r\n\r\n* Update conda_build_config.yaml\r\n\r\nrevert to clang on OSX.\r\n\r\n* osx build\r\n\r\n* osx build\r\n\r\n* Update meta.yaml\r\n\r\nbump llvm_version\r\n\r\n* Update meta.yaml\r\n\r\nversion\r\n\r\n* Update meta.yaml\r\n\r\nversion again\r\n\r\n* Update meta.yaml\r\n\r\nTry @bgruening's trick\r\n\r\n* Delete conda_build_config.yaml\r\n\r\nremove since we're not using this.\r\n\r\n* Update meta.yaml\r\n\r\ngo back to other boost to be compatible with gcc 4.8.5\r\n\r\n* Update build.sh\r\n\r\ncausing a problem with osx build?\r\n\r\n* Update build.sh\r\n\r\nhuh?\r\n\r\n* try and remove librt on OSX build\r\n\r\n* skip linux until we have OSX\r\n\r\n* Update meta.yaml\r\n\r\n* Update meta.yaml\r\n\r\n* Update build.sh\r\n\r\nchange deployment target (10.9)\r\n\r\n* Create conda_build_config.yaml\r\n\r\n* Update meta.yaml\r\n\r\nok, let's go all in on the new stuff and try to fix it from that direction\r\n\r\n* Update meta.yaml\r\n\r\n* Update meta.yaml\r\n\r\ntry different boost on osx?\r\n\r\n* Update meta.yaml\r\n\r\nthis is a frustrated commit message ...\r\n\r\n* Update meta.yaml\r\n\r\n* Update meta.yaml\r\n\r\nTry boost instead of libboost --- do we get the same error on OSX?\r\n\r\n* Update meta.yaml\r\n\r\nSee if we can use boost instead of libboost on linux\r\n\r\n* revert `boost` to `libboost` under linux.\r\n\r\nnope ... `boost` instead of `libboost` fails under linux.\r\n\r\n* Update meta.yaml\r\n\r\nhorrible, horrible, horrible ...\r\n\r\n* Update meta.yaml\r\n\r\nnope.  nope, nope, nope --- we *need* `libboost` on linux for now.  Why doesn't it work on OSX?\r\n\r\n* Update meta.yaml\r\n\r\ntry this\r\n\r\n* Update meta.yaml\r\n\r\nupdate md5sum\r\n\r\n* Update meta.yaml\r\n\r\n50th time's a charm?\r\n\r\n* Update meta.yaml\r\n\r\n51st time's a charm ... I'm gonna guess not.\r\n\r\n* Update meta.yaml\r\n\r\nOk --- last attempt *worked*!  Now, try to make everything C++14, and re-enable linux build.\r\n\r\n* Update meta.yaml\r\n\r\nhave to update md5sum\r\n\r\n* Update meta.yaml\r\n\r\ntry and build tagged v0.11.3","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/c1a7153629f0a0ff036b115184ea39a9e191d89f"},{"sha":"360087a7495a8bd2fded5eea830b190216a36bc4","author":{"name":"Torsten Seemann","email":"fd8337a2e5ffd14c8f1b51d3b928e03d358a6a77@users.noreply.github.com"},"message":"Update mlst to 2.15 (#10752)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/360087a7495a8bd2fded5eea830b190216a36bc4"},{"sha":"6eb89dbc10a42600a32b9c1a5d6fab449d4bd82c","author":{"name":"MONJEAUD Cyril","email":"65e4c884f1c6063cd541c43c7480df3627576216@irisa.fr"},"message":"Rebuild feelnc (#10725)\n\n* force perl=5.22 for running feelnc\r\n\r\n* remove changes and remove feelnc from blacklist\r\n\r\n* remove perl dep, will use the perl-bioperl one\r\n\r\n* add back perl\r\n\r\n* fix path to perl modules\r\n\r\n* copy to correct perl lib dir","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/6eb89dbc10a42600a32b9c1a5d6fab449d4bd82c"},{"sha":"14bdfb5808734e94f28e76924b2fa4f537028bfb","author":{"name":"Rens Holmer","email":"c46fef0c8a53327598c443492e973fcfe7c61164@wur.nl"},"message":"Genenotebook v0.1.2 (#10756)\n\n* genenotebook recipe\r\n\r\n* About\r\n\r\n* Package name\r\n\r\n* License\r\n\r\n* sha256sum\r\n\r\n* Update build.sh\r\n\r\n* Make bin dir\r\n\r\n* Change ln to cp\r\n\r\n* New symlink strategy\r\n\r\n* Build from prebundled tarball\r\n\r\n* genenotebook v0.1.2","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/14bdfb5808734e94f28e76924b2fa4f537028bfb"},{"sha":"8ef7bf150131ba722cccf46c3f92112363696f9a","author":{"name":"Josh Moore","email":"c028c213ed5efcf30c3f4fc7361dbde0c893c5b7@glencoesoftware.com"},"message":"Bump slicedimage to 0.0.4 (#10757)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/8ef7bf150131ba722cccf46c3f92112363696f9a"},{"sha":"4896fa757ded66aaf3e393ae9a69e0e458759aa5","author":{"name":"Josh Moore","email":"c028c213ed5efcf30c3f4fc7361dbde0c893c5b7@glencoesoftware.com"},"message":"Bump starfish's slicedimage dep to 0.0.4 (#10758)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/4896fa757ded66aaf3e393ae9a69e0e458759aa5"},{"sha":"a47466573ac5cd416778f85f570879be08157f6f","author":{"name":"Geni Silva","email":"74680f1f8636365f88ab7fc23cd2b6b259a1e99a@helix.com"},"message":"bump r2r version (#10740)\n\n* bump r2r version\r\n\r\n* Update meta.yaml","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/a47466573ac5cd416778f85f570879be08157f6f"},{"sha":"678cef462e79154ea40514ec1552fbcc1da039c1","author":{"name":"Shaun Jackman","email":"b580dab3251a9622aba3803114310c23fdb42900@gmail.com"},"message":"tigmint 1.1.2 (new recipe) (#10754)\n\n* tigmint 1.1.2 (new recipe)\r\n\r\n* tigmint: Fix meta.yaml\r\n\r\nThe documentation is unfortunately out of date so you should use noarch.\r\n\r\nThe host section could shortened to python and pip.\r\n\r\npypi doesn't package the LICENSE file in the tarball. You could swap to use the github release if you would like to use it.\r\n\r\nTrying to add make\r\n\r\n* tigmint: Fix the mulled test\r\n\r\nMake is a runtime dependency.\r\n\r\nFix the error:\r\n/usr/local/bin/tigmint: exec: line 13: /usr/local/bin/tigmint-make: not found","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/678cef462e79154ea40514ec1552fbcc1da039c1"},{"sha":"84d2c2bdb2e81676a7ce55ad5b1f44b30bd3a765","author":{"name":"Michael Shaffer","email":"7fd09ff7612bb33399a4eb5c8e8b2cc59371ba24@ucdenver.edu"},"message":"Update SCNIC to 0.5.3 (#10763)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/84d2c2bdb2e81676a7ce55ad5b1f44b30bd3a765"},{"sha":"33313ca6af68666c08ae58953a34064e5ed04842","author":{"name":"Elmar Pruesse","email":"384d5d559858bbae848654f52b728b20948741d0@users.noreply.github.com"},"message":"Remove bats package (see #10761) (#10762)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/33313ca6af68666c08ae58953a34064e5ed04842"},{"sha":"e2451adfaf12caa88805bc4361ad1d260672a17a","author":{"name":"Fabio Cumbo","email":"1922e43412203cefa6d8b603faa4019749aedc5d@gmail.com"},"message":"RNAcentral data retrieval tool (#10661)\n\n* RNAcentral data retrieval tool\r\n\r\n* build number, sha256, and license\r\n\r\n* license fix","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/e2451adfaf12caa88805bc4361ad1d260672a17a"},{"sha":"ad668ab91e09bed08688740d12e58be3f33941be","author":{"name":"Andreas Sjödin","email":"ba0288f3a9933c689145f4b51b0e1bdfcd8f6fe3@gmail.com"},"message":"Add krakenuniq (#10753)\n\n* Add krakenuniq\r\n\r\n* typo\r\n\r\n* Clean up blacklist\r\n\r\n* Update meta.yaml\r\n\r\n* Bump version","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/ad668ab91e09bed08688740d12e58be3f33941be"},{"sha":"b8be69c3e129cf52ccf20ad774ef2bce80bd5390","author":{"name":"Brad Chapman","email":"29c47cac31e9e186ed59ffc1ed60aa4cb23634cc@fastmail.com"},"message":"Update: vcfanno v0.3.0, dx-cwl (#10765)\n\n- vcfanno: fixes for gVCF dbSNP matching brentp/vcfanno#92\r\n- dx-cwl: support file names with spaces dnanexus/dx-cwl#27","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/b8be69c3e129cf52ccf20ad774ef2bce80bd5390"},{"sha":"1bfddd167bb40b13982e8179387e7770e007a9c1","author":{"name":"Rens Holmer","email":"c46fef0c8a53327598c443492e973fcfe7c61164@wur.nl"},"message":"Genenotebook version fix (#10760)\n\n* genenotebook recipe\r\n\r\n* About\r\n\r\n* Package name\r\n\r\n* License\r\n\r\n* sha256sum\r\n\r\n* Update build.sh\r\n\r\n* Make bin dir\r\n\r\n* Change ln to cp\r\n\r\n* New symlink strategy\r\n\r\n* Build from prebundled tarball\r\n\r\n* genenotebook v0.1.2\r\n\r\n* version fix\r\n\r\n* retry\r\n\r\n* fix\r\n\r\n* build number","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/1bfddd167bb40b13982e8179387e7770e007a9c1"},{"sha":"845a2b5b0016773cee9417cbd86fa5959454ac51","author":{"name":"Will Rowe","email":"514fdbab166eebf487fbe6f777356d7132e4a72a@stfc.ac.uk"},"message":"bumping to 0.2 (#10767)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/845a2b5b0016773cee9417cbd86fa5959454ac51"},{"sha":"d2eafc7422af287c965d197cef4a43635f4b7e3c","author":{"name":"Will Rowe","email":"514fdbab166eebf487fbe6f777356d7132e4a72a@stfc.ac.uk"},"message":"bumping hulk to 0.0.2 (#10768)\n\n* bumping hulk to 0.0.2\r\n\r\n* Update meta.yaml","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/d2eafc7422af287c965d197cef4a43635f4b7e3c"},{"sha":"e52a45f55fe10f9ed9ace51447bce5ce4f1b4291","author":{"name":"AlexanderVi","email":"6716f56dfaf13663bfab3ee15329e39a0094a784@ebi.ac.uk"},"message":"Add pyega3 (#10742)\n\n* Add pyega3\r\n\r\n* minor fixes for pyega3 recipee\r\n\r\n* removed build:noarch from pyega3 recipee","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/e52a45f55fe10f9ed9ace51447bce5ce4f1b4291"},{"sha":"1e793a6bc955da45d748cfe9cfcd16c445e59858","author":{"name":"Michael Kluge","email":"21f0f72531b740ee1f5a57476e7b828bdebf770c@users.noreply.github.com"},"message":"updated watchdog-wms version to 1.2.7 (#10770)","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/1e793a6bc955da45d748cfe9cfcd16c445e59858"},{"sha":"c1fb16c44e07e763c5b9453806bac56456d5ec7a","author":{"name":"reneechou123","email":"3dc8ac6882e2b21c8d2d6c8ac33bd1e79a355862@users.noreply.github.com"},"message":"Genclust (#10704)\n\n* Added genclust\r\n\r\n* Update build.sh\r\n\r\n* Update build.sh","distinct":true,"url":"https://api.github.com/repos/acaprez/recipes/commits/c1fb16c44e07e763c5b9453806bac56456d5ec7a"}]}
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