{"action":"created","issue":{"url":"https://api.github.com/repos/magicDGS/ReadTools/issues/491","repository_url":"https://api.github.com/repos/magicDGS/ReadTools","labels_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/491/labels{/name}","comments_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/491/comments","events_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/491/events","html_url":"https://github.com/magicDGS/ReadTools/pull/491","id":344972180,"node_id":"MDExOlB1bGxSZXF1ZXN0MjA0MjQwNzY1","number":491,"title":"Implement experimental GemMappabilityToBed tool","user":{"login":"magicDGS","id":7352559,"node_id":"MDQ6VXNlcjczNTI1NTk=","avatar_url":"https://avatars0.githubusercontent.com/u/7352559?v=4","gravatar_id":"","url":"https://api.github.com/users/magicDGS","html_url":"https://github.com/magicDGS","followers_url":"https://api.github.com/users/magicDGS/followers","following_url":"https://api.github.com/users/magicDGS/following{/other_user}","gists_url":"https://api.github.com/users/magicDGS/gists{/gist_id}","starred_url":"https://api.github.com/users/magicDGS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/magicDGS/subscriptions","organizations_url":"https://api.github.com/users/magicDGS/orgs","repos_url":"https://api.github.com/users/magicDGS/repos","events_url":"https://api.github.com/users/magicDGS/events{/privacy}","received_events_url":"https://api.github.com/users/magicDGS/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2018-07-26T19:17:45Z","updated_at":"2018-07-27T16:39:50Z","closed_at":null,"author_association":"OWNER","pull_request":{"url":"https://api.github.com/repos/magicDGS/ReadTools/pulls/491","html_url":"https://github.com/magicDGS/ReadTools/pull/491","diff_url":"https://github.com/magicDGS/ReadTools/pull/491.diff","patch_url":"https://github.com/magicDGS/ReadTools/pull/491.patch"},"body":"New experimental tool to perform conversion between GEM-mappability and BED-graph format. This tool includes also an scoring method switch, to convert the range of number of mappings (n) to an unique value. Current scoring methods are minimum/maximum/middle. In the future, this will be extended to score also the \"mappability\" sensu stricto (1/n).\r\n\r\nThis commit also adds a new program group for mappability-related tools.\r\n\r\nPart of #207"},"comment":{"url":"https://api.github.com/repos/magicDGS/ReadTools/issues/comments/408473726","html_url":"https://github.com/magicDGS/ReadTools/pull/491#issuecomment-408473726","issue_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/491","id":408473726,"node_id":"MDEyOklzc3VlQ29tbWVudDQwODQ3MzcyNg==","user":{"login":"codecov[bot]","id":22429695,"node_id":"MDM6Qm90MjI0Mjk2OTU=","avatar_url":"https://avatars2.githubusercontent.com/in/254?v=4","gravatar_id":"","url":"https://api.github.com/users/codecov%5Bbot%5D","html_url":"https://github.com/apps/codecov","followers_url":"https://api.github.com/users/codecov%5Bbot%5D/followers","following_url":"https://api.github.com/users/codecov%5Bbot%5D/following{/other_user}","gists_url":"https://api.github.com/users/codecov%5Bbot%5D/gists{/gist_id}","starred_url":"https://api.github.com/users/codecov%5Bbot%5D/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/codecov%5Bbot%5D/subscriptions","organizations_url":"https://api.github.com/users/codecov%5Bbot%5D/orgs","repos_url":"https://api.github.com/users/codecov%5Bbot%5D/repos","events_url":"https://api.github.com/users/codecov%5Bbot%5D/events{/privacy}","received_events_url":"https://api.github.com/users/codecov%5Bbot%5D/received_events","type":"Bot","site_admin":false},"created_at":"2018-07-27T16:39:50Z","updated_at":"2018-07-27T16:39:50Z","author_association":"NONE","body":"# [Codecov](https://codecov.io/gh/magicDGS/ReadTools/pull/491?src=pr&el=h1) Report\n> Merging [#491](https://codecov.io/gh/magicDGS/ReadTools/pull/491?src=pr&el=desc) into [master](https://codecov.io/gh/magicDGS/ReadTools/commit/19f7812d0c5741b8a044b8c9868f516f97f13b85?src=pr&el=desc) will **decrease** coverage by `0.12%`.\n> The diff coverage is `84.615%`.\n\n[![Impacted file tree graph](https://codecov.io/gh/magicDGS/ReadTools/pull/491/graphs/tree.svg?width=650&token=ijrOk8gNhi&height=150&src=pr)](https://codecov.io/gh/magicDGS/ReadTools/pull/491?src=pr&el=tree)\n\n```diff\n@@              Coverage Diff               @@\n##              master      #491      +/-   ##\n==============================================\n- Coverage     93.076%   92.956%   -0.12%     \n- Complexity      1040      1056      +16     \n==============================================\n  Files             99       102       +3     \n  Lines           2773      2825      +52     \n  Branches         299       301       +2     \n==============================================\n+ Hits            2581      2626      +45     \n- Misses           146       153       +7     \n  Partials          46        46\n```\n\n\n| [Impacted Files](https://codecov.io/gh/magicDGS/ReadTools/pull/491?src=pr&el=tree) | Coverage Δ | Complexity Δ | |\n|---|---|---|---|\n| [...ls/cmd/programgroups/MappabiltityProgramGroup.java](https://codecov.io/gh/magicDGS/ReadTools/pull/491/diff?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvbWFnaWNkZ3MvcmVhZHRvb2xzL2NtZC9wcm9ncmFtZ3JvdXBzL01hcHBhYmlsdGl0eVByb2dyYW1Hcm91cC5qYXZh) | `0% <0%> (ø)` | `0 <0> (?)` | |\n| [...n/java/org/magicdgs/readtools/RTHelpConstants.java](https://codecov.io/gh/magicDGS/ReadTools/pull/491/diff?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvbWFnaWNkZ3MvcmVhZHRvb2xzL1JUSGVscENvbnN0YW50cy5qYXZh) | `88.372% <100%> (+0.277%)` | `13 <0> (ø)` | :arrow_down: |\n| [...ols/tools/mappability/gem/GemMappabilityToBed.java](https://codecov.io/gh/magicDGS/ReadTools/pull/491/diff?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvbWFnaWNkZ3MvcmVhZHRvb2xzL3Rvb2xzL21hcHBhYmlsaXR5L2dlbS9HZW1NYXBwYWJpbGl0eVRvQmVkLmphdmE=) | `88.571% <88.571%> (ø)` | `9 <9> (?)` | |\n| [...eadtools/tools/mappability/gem/GemScoreMethod.java](https://codecov.io/gh/magicDGS/ReadTools/pull/491/diff?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvbWFnaWNkZ3MvcmVhZHRvb2xzL3Rvb2xzL21hcHBhYmlsaXR5L2dlbS9HZW1TY29yZU1ldGhvZC5qYXZh) | `92.308% <92.308%> (ø)` | `6 <6> (?)` | |\n| [...ls/utils/mappability/gem/GemMappabilityRecord.java](https://codecov.io/gh/magicDGS/ReadTools/pull/491/diff?src=pr&el=tree#diff-c3JjL21haW4vamF2YS9vcmcvbWFnaWNkZ3MvcmVhZHRvb2xzL3V0aWxzL21hcHBhYmlsaXR5L2dlbS9HZW1NYXBwYWJpbGl0eVJlY29yZC5qYXZh) | `100% <0%> (+10%)` | `7% <0%> (+1%)` | :arrow_up: |\n"}}
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