{"action":"created","issue":{"url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue/issues/9","repository_url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue","labels_url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue/issues/9/labels{/name}","comments_url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue/issues/9/comments","events_url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue/issues/9/events","html_url":"https://github.com/bcuser30/ML_GalaxyQueue/issues/9","id":330100817,"node_id":"MDU6SXNzdWUzMzAxMDA4MTc=","number":9,"title":"Jobs stuck in waiting state","user":{"login":"spficklin","id":1719352,"node_id":"MDQ6VXNlcjE3MTkzNTI=","avatar_url":"https://avatars0.githubusercontent.com/u/1719352?v=4","gravatar_id":"","url":"https://api.github.com/users/spficklin","html_url":"https://github.com/spficklin","followers_url":"https://api.github.com/users/spficklin/followers","following_url":"https://api.github.com/users/spficklin/following{/other_user}","gists_url":"https://api.github.com/users/spficklin/gists{/gist_id}","starred_url":"https://api.github.com/users/spficklin/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/spficklin/subscriptions","organizations_url":"https://api.github.com/users/spficklin/orgs","repos_url":"https://api.github.com/users/spficklin/repos","events_url":"https://api.github.com/users/spficklin/events{/privacy}","received_events_url":"https://api.github.com/users/spficklin/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":17,"created_at":"2018-06-07T03:07:31Z","updated_at":"2018-06-08T20:17:22Z","closed_at":null,"author_association":"NONE","body":"It seems jobs on the test server get stuck in the waiting state. As reported by MingChen0919  here:  tripal/tripal_galaxy/issues/101.\r\n\r\nI was able to duplicate this problem by submitting a job. It sits in the queue waiting after submission through the Tripal Galaxy Module.  If I then go to the Galaxy web portal for the test server and go to my history I can manually click the icon to re-run the job and then it will start. \r\n\r\nSo, I think of two reasons why this would happen.  \r\n1.  There's an updated to the Galaxy API that requires we set a flag when invoking the workflow to get it going\r\n2.  There's some configuration setting somewhere that controls this behavior.\r\n\r\nAre you aware of anything on that second item?"},"comment":{"url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue/issues/comments/395878182","html_url":"https://github.com/bcuser30/ML_GalaxyQueue/issues/9#issuecomment-395878182","issue_url":"https://api.github.com/repos/bcuser30/ML_GalaxyQueue/issues/9","id":395878182,"node_id":"MDEyOklzc3VlQ29tbWVudDM5NTg3ODE4Mg==","user":{"login":"bcuser30","id":16924589,"node_id":"MDQ6VXNlcjE2OTI0NTg5","avatar_url":"https://avatars1.githubusercontent.com/u/16924589?v=4","gravatar_id":"","url":"https://api.github.com/users/bcuser30","html_url":"https://github.com/bcuser30","followers_url":"https://api.github.com/users/bcuser30/followers","following_url":"https://api.github.com/users/bcuser30/following{/other_user}","gists_url":"https://api.github.com/users/bcuser30/gists{/gist_id}","starred_url":"https://api.github.com/users/bcuser30/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bcuser30/subscriptions","organizations_url":"https://api.github.com/users/bcuser30/orgs","repos_url":"https://api.github.com/users/bcuser30/repos","events_url":"https://api.github.com/users/bcuser30/events{/privacy}","received_events_url":"https://api.github.com/users/bcuser30/received_events","type":"User","site_admin":false},"created_at":"2018-06-08T20:17:22Z","updated_at":"2018-06-08T20:17:22Z","author_association":"OWNER","body":"The qacct output indicates the job failed '26 : opening input/output file' \r\n\r\nThat's still pretty cryptic, but tells me the cluster had problems accessing the file.  Why....I'm not sure."}}
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