{"action":"created","issue":{"url":"https://api.github.com/repos/geneontology/gaferencer/issues/1","repository_url":"https://api.github.com/repos/geneontology/gaferencer","labels_url":"https://api.github.com/repos/geneontology/gaferencer/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/geneontology/gaferencer/issues/1/comments","events_url":"https://api.github.com/repos/geneontology/gaferencer/issues/1/events","html_url":"https://github.com/geneontology/gaferencer/issues/1","id":354495075,"node_id":"MDU6SXNzdWUzNTQ0OTUwNzU=","number":1,"title":"Pre-generate a taxon-term-tuple file indicating which combos are valid","user":{"login":"cmungall","id":50745,"node_id":"MDQ6VXNlcjUwNzQ1","avatar_url":"https://avatars1.githubusercontent.com/u/50745?v=4","gravatar_id":"","url":"https://api.github.com/users/cmungall","html_url":"https://github.com/cmungall","followers_url":"https://api.github.com/users/cmungall/followers","following_url":"https://api.github.com/users/cmungall/following{/other_user}","gists_url":"https://api.github.com/users/cmungall/gists{/gist_id}","starred_url":"https://api.github.com/users/cmungall/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/cmungall/subscriptions","organizations_url":"https://api.github.com/users/cmungall/orgs","repos_url":"https://api.github.com/users/cmungall/repos","events_url":"https://api.github.com/users/cmungall/events{/privacy}","received_events_url":"https://api.github.com/users/cmungall/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":6,"created_at":"2018-08-27T22:03:28Z","updated_at":"2018-09-19T16:38:51Z","closed_at":null,"author_association":"MEMBER","body":"[this ticket may be moved to a different repo. A lot of the functionality is the same as geferencer so putting here for now]\r\n\r\ngiven a list of taxa (species and intermediate nodes), pre-generate a table indicating valid combos. use go-plus and either ncbitaxon.owl or some subset as additional inputs.\r\n\r\nThis *could*be done right now by making a fake GAF with every term x taxon combo, seems a bit hacky?\r\n\r\nWe should either adapt gaferencer or just lift the code parts we need into a new tool.\r\n\r\n - [ ] provide a file with all tax ids used in PAINT @dustine32\r\n - [ ] write a T3M generator; will be executed as part of GOC pipeline @dustine32 + @balhoff \r\n - [ ] figure out how to take the generated file and slurp it into the PAINT infrastructure @mugitty\r\n\r\nAn additional wrinkle here is that PAINT uses it's own symbols for some intermediate nodes. We can address on future pass.\r\n\r\nPicture from USC:\r\n![image](https://user-images.githubusercontent.com/50745/44689247-af776600-aa0b-11e8-9a77-645c4ae10c9d.png)\r\n"},"comment":{"url":"https://api.github.com/repos/geneontology/gaferencer/issues/comments/422872373","html_url":"https://github.com/geneontology/gaferencer/issues/1#issuecomment-422872373","issue_url":"https://api.github.com/repos/geneontology/gaferencer/issues/1","id":422872373,"node_id":"MDEyOklzc3VlQ29tbWVudDQyMjg3MjM3Mw==","user":{"login":"balhoff","id":210210,"node_id":"MDQ6VXNlcjIxMDIxMA==","avatar_url":"https://avatars1.githubusercontent.com/u/210210?v=4","gravatar_id":"","url":"https://api.github.com/users/balhoff","html_url":"https://github.com/balhoff","followers_url":"https://api.github.com/users/balhoff/followers","following_url":"https://api.github.com/users/balhoff/following{/other_user}","gists_url":"https://api.github.com/users/balhoff/gists{/gist_id}","starred_url":"https://api.github.com/users/balhoff/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/balhoff/subscriptions","organizations_url":"https://api.github.com/users/balhoff/orgs","repos_url":"https://api.github.com/users/balhoff/repos","events_url":"https://api.github.com/users/balhoff/events{/privacy}","received_events_url":"https://api.github.com/users/balhoff/received_events","type":"User","site_admin":false},"created_at":"2018-09-19T16:38:51Z","updated_at":"2018-09-19T16:38:51Z","author_association":"MEMBER","body":"Cool—I could do JSON instead if you want."}}
{"actor":{"display_login":"balhoff"}}