{"action":"created","issue":{"url":"https://api.github.com/repos/ga4gh/dockstore/issues/1137","repository_url":"https://api.github.com/repos/ga4gh/dockstore","labels_url":"https://api.github.com/repos/ga4gh/dockstore/issues/1137/labels{/name}","comments_url":"https://api.github.com/repos/ga4gh/dockstore/issues/1137/comments","events_url":"https://api.github.com/repos/ga4gh/dockstore/issues/1137/events","html_url":"https://github.com/ga4gh/dockstore/issues/1137","id":293350136,"number":1137,"title":"Dockstore CLI Should Let User Specify Cromwell Version","user":{"login":"coverbeck","id":1049340,"avatar_url":"https://avatars3.githubusercontent.com/u/1049340?v=4","gravatar_id":"","url":"https://api.github.com/users/coverbeck","html_url":"https://github.com/coverbeck","followers_url":"https://api.github.com/users/coverbeck/followers","following_url":"https://api.github.com/users/coverbeck/following{/other_user}","gists_url":"https://api.github.com/users/coverbeck/gists{/gist_id}","starred_url":"https://api.github.com/users/coverbeck/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/coverbeck/subscriptions","organizations_url":"https://api.github.com/users/coverbeck/orgs","repos_url":"https://api.github.com/users/coverbeck/repos","events_url":"https://api.github.com/users/coverbeck/events{/privacy}","received_events_url":"https://api.github.com/users/coverbeck/received_events","type":"User","site_admin":false},"labels":[{"id":290685292,"url":"https://api.github.com/repos/ga4gh/dockstore/labels/cli","name":"cli","color":"bfd4f2","default":false},{"id":195581988,"url":"https://api.github.com/repos/ga4gh/dockstore/labels/enhancement","name":"enhancement","color":"84b6eb","default":true}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/ga4gh/dockstore/milestones/15","html_url":"https://github.com/ga4gh/dockstore/milestone/15","labels_url":"https://api.github.com/repos/ga4gh/dockstore/milestones/15/labels","id":2912603,"number":15,"title":"1.4.0","description":"Long term release","creator":{"login":"denis-yuen","id":1730679,"avatar_url":"https://avatars0.githubusercontent.com/u/1730679?v=4","gravatar_id":"","url":"https://api.github.com/users/denis-yuen","html_url":"https://github.com/denis-yuen","followers_url":"https://api.github.com/users/denis-yuen/followers","following_url":"https://api.github.com/users/denis-yuen/following{/other_user}","gists_url":"https://api.github.com/users/denis-yuen/gists{/gist_id}","starred_url":"https://api.github.com/users/denis-yuen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/denis-yuen/subscriptions","organizations_url":"https://api.github.com/users/denis-yuen/orgs","repos_url":"https://api.github.com/users/denis-yuen/repos","events_url":"https://api.github.com/users/denis-yuen/events{/privacy}","received_events_url":"https://api.github.com/users/denis-yuen/received_events","type":"User","site_admin":false},"open_issues":22,"closed_issues":25,"state":"open","created_at":"2017-11-14T19:58:27Z","updated_at":"2018-03-14T16:13:39Z","due_on":"2018-03-26T07:00:00Z","closed_at":null},"comments":1,"created_at":"2018-01-31T23:29:27Z","updated_at":"2018-03-14T16:14:33Z","closed_at":null,"author_association":"CONTRIBUTOR","body":"## Feature Request \r\n\r\nDockstore CLI always runs the version of Cromwell specified at `io.dockstore.client.cli.nested.AbstractEntryClient#CROMWELL_LOCATION`\r\n\r\nDockstore should use that value as the default, but should optionally allow the user to specify a different version. Using the latest or an earlier version of Cromwell would then no longer require a new Dockstore CLI build.\r\n\r\nWhile Dockstore CLI has no compile time dependencies on Cromwell, there is still the risk a different version of Cromwell may not work from Dockstore, as, for example, the command-line arguments might change between versions. However, the users could use this feature at their own risk."},"comment":{"url":"https://api.github.com/repos/ga4gh/dockstore/issues/comments/373080740","html_url":"https://github.com/ga4gh/dockstore/issues/1137#issuecomment-373080740","issue_url":"https://api.github.com/repos/ga4gh/dockstore/issues/1137","id":373080740,"user":{"login":"denis-yuen","id":1730679,"avatar_url":"https://avatars0.githubusercontent.com/u/1730679?v=4","gravatar_id":"","url":"https://api.github.com/users/denis-yuen","html_url":"https://github.com/denis-yuen","followers_url":"https://api.github.com/users/denis-yuen/followers","following_url":"https://api.github.com/users/denis-yuen/following{/other_user}","gists_url":"https://api.github.com/users/denis-yuen/gists{/gist_id}","starred_url":"https://api.github.com/users/denis-yuen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/denis-yuen/subscriptions","organizations_url":"https://api.github.com/users/denis-yuen/orgs","repos_url":"https://api.github.com/users/denis-yuen/repos","events_url":"https://api.github.com/users/denis-yuen/events{/privacy}","received_events_url":"https://api.github.com/users/denis-yuen/received_events","type":"User","site_admin":false},"created_at":"2018-03-14T16:14:33Z","updated_at":"2018-03-14T16:14:33Z","author_association":"MEMBER","body":"Configurable in config\r\n```\r\n$ cat ~/.dockstore/config\r\ntoken: <censored>\r\n#server-url: http://10.11.8.80:8080\r\nserver-url: https://dockstore.org:8443\r\nuse-cache = true\r\ncwlrunner = cwl-runner\r\nbunny-version = 1.0.4-4\r\ncromwell-version = 30.2\r\n$ dockstore tool launch --local-entry Dockstore.wdl --json test.wdl.json\r\nRunning with Cromwell 30.2 , Dockstore tests with 29\r\nCreating directories for run of Dockstore launcher in current working directory: /home/dyuen/dockstore_tools/dockstore-tool-md5sum\r\nProvisioning your input files to your local machine\r\nDownloading: ga4ghMd5.inputFile from md5sum.input to: /home/dyuen/dockstore_tools/dockstore-tool-md5sum/cromwell-input/2ffde7e9-98e6-4a17-b19c-0878e6b45025/md5sum.input\r\nCaching file /home/dyuen/dockstore_tools/dockstore-tool-md5sum/cromwell-input/2ffde7e9-98e6-4a17-b19c-0878e6b45025/md5sum.input in cache, hard-linking\r\nCalling out to Cromwell to run your workflow\r\njava -jar /home/dyuen/.dockstore/libraries/cromwell-30.2.jar run /home/dyuen/dockstore_tools/dockstore-tool-md5sum/Dockstore.wdl --inputs /tmp/foo8514513664046447635json\r\n```\r\n"}}
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