{"action":"created","comment":{"url":"https://api.github.com/repos/nf-core/mhcquant/pulls/comments/241047745","pull_request_review_id":184220387,"id":241047745,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDI0MTA0Nzc0NQ==","diff_hunk":"@@ -597,7 +597,7 @@ process predict_peptides {\n \n     script:\n      \"\"\"\n-     python mhcflurry_predict_mztab.py ${allotypes} ${mztab_file} 'predicted_peptides.csv'\n+     /opt/conda/envs/nf-core-mhcquant-1.1.0/bin/python mhcflurry_predict_mztab.py ${allotypes} ${mztab_file} 'predicted_peptides.csv'","path":"main.nf","position":113,"original_position":5,"commit_id":"1b1935dd9d5a25f729d0d8fc4202b325a98f5709","original_commit_id":"1b1935dd9d5a25f729d0d8fc4202b325a98f5709","user":{"login":"Leon-Bichmann","id":25149151,"node_id":"MDQ6VXNlcjI1MTQ5MTUx","avatar_url":"https://avatars3.githubusercontent.com/u/25149151?v=4","gravatar_id":"","url":"https://api.github.com/users/Leon-Bichmann","html_url":"https://github.com/Leon-Bichmann","followers_url":"https://api.github.com/users/Leon-Bichmann/followers","following_url":"https://api.github.com/users/Leon-Bichmann/following{/other_user}","gists_url":"https://api.github.com/users/Leon-Bichmann/gists{/gist_id}","starred_url":"https://api.github.com/users/Leon-Bichmann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Leon-Bichmann/subscriptions","organizations_url":"https://api.github.com/users/Leon-Bichmann/orgs","repos_url":"https://api.github.com/users/Leon-Bichmann/repos","events_url":"https://api.github.com/users/Leon-Bichmann/events{/privacy}","received_events_url":"https://api.github.com/users/Leon-Bichmann/received_events","type":"User","site_admin":false},"body":"also it doesnt find mhcflurry_predict_mztab.py in the mhcquant/bin folder\r\n","created_at":"2018-12-12T14:59:24Z","updated_at":"2018-12-12T14:59:25Z","html_url":"https://github.com/nf-core/mhcquant/pull/14#discussion_r241047745","pull_request_url":"https://api.github.com/repos/nf-core/mhcquant/pulls/14","author_association":"COLLABORATOR","_links":{"self":{"href":"https://api.github.com/repos/nf-core/mhcquant/pulls/comments/241047745"},"html":{"href":"https://github.com/nf-core/mhcquant/pull/14#discussion_r241047745"},"pull_request":{"href":"https://api.github.com/repos/nf-core/mhcquant/pulls/14"}},"in_reply_to_id":240996748},"pull_request":{"url":"https://api.github.com/repos/nf-core/mhcquant/pulls/14","id":237975544,"node_id":"MDExOlB1bGxSZXF1ZXN0MjM3OTc1NTQ0","html_url":"https://github.com/nf-core/mhcquant/pull/14","diff_url":"https://github.com/nf-core/mhcquant/pull/14.diff","patch_url":"https://github.com/nf-core/mhcquant/pull/14.patch","issue_url":"https://api.github.com/repos/nf-core/mhcquant/issues/14","number":14,"state":"open","locked":false,"title":"Next release comming including mhcflurry dependency","user":{"login":"Leon-Bichmann","id":25149151,"node_id":"MDQ6VXNlcjI1MTQ5MTUx","avatar_url":"https://avatars3.githubusercontent.com/u/25149151?v=4","gravatar_id":"","url":"https://api.github.com/users/Leon-Bichmann","html_url":"https://github.com/Leon-Bichmann","followers_url":"https://api.github.com/users/Leon-Bichmann/followers","following_url":"https://api.github.com/users/Leon-Bichmann/following{/other_user}","gists_url":"https://api.github.com/users/Leon-Bichmann/gists{/gist_id}","starred_url":"https://api.github.com/users/Leon-Bichmann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Leon-Bichmann/subscriptions","organizations_url":"https://api.github.com/users/Leon-Bichmann/orgs","repos_url":"https://api.github.com/users/Leon-Bichmann/repos","events_url":"https://api.github.com/users/Leon-Bichmann/events{/privacy}","received_events_url":"https://api.github.com/users/Leon-Bichmann/received_events","type":"User","site_admin":false},"body":"Many thanks to contributing to nf-core/mhcquant!\r\n\r\nPlease fill in the appropriate checklist below (delete whatever is not relevant). These are the most common things requested on pull requests (PRs).\r\n\r\n## PR checklist\r\n - [x] This comment contains a description of changes (with reason)\r\n - [x] If you've fixed a bug or added code that should be tested, add tests!\r\n - [x] If necessary, also make a PR on the [nf-core/mhcquant branch on the nf-core/test-datasets repo]( https://github.com/nf-core/test-datasets/pull/new/nf-core/mhcquant)\r\n - [ ] Ensure the test suite passes (`nextflow run . -profile test,docker`).\r\n - [ ] Make sure your code lints (`nf-core lint .`).\r\n - [x] Documentation in `docs` is updated\r\n - [ ] `CHANGELOG.md` is updated\r\n - [x] `README.md` is updated\r\n\r\n**Learn more about contributing:** https://github.com/nf-core/mhcquant/tree/master/.github/CONTRIBUTING.md\r\n","created_at":"2018-12-12T09:59:14Z","updated_at":"2018-12-12T14:59:25Z","closed_at":null,"merged_at":null,"merge_commit_sha":"40b62baece6abd1ab5a7d968085ce814b397b952","assignee":null,"assignees":[],"requested_reviewers":[{"login":"apeltzer","id":2359510,"node_id":"MDQ6VXNlcjIzNTk1MTA=","avatar_url":"https://avatars3.githubusercontent.com/u/2359510?v=4","gravatar_id":"","url":"https://api.github.com/users/apeltzer","html_url":"https://github.com/apeltzer","followers_url":"https://api.github.com/users/apeltzer/followers","following_url":"https://api.github.com/users/apeltzer/following{/other_user}","gists_url":"https://api.github.com/users/apeltzer/gists{/gist_id}","starred_url":"https://api.github.com/users/apeltzer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/apeltzer/subscriptions","organizations_url":"https://api.github.com/users/apeltzer/orgs","repos_url":"https://api.github.com/users/apeltzer/repos","events_url":"https://api.github.com/users/apeltzer/events{/privacy}","received_events_url":"https://api.github.com/users/apeltzer/received_events","type":"User","site_admin":false}],"requested_teams":[],"labels":[],"milestone":null,"commits_url":"https://api.github.com/repos/nf-core/mhcquant/pulls/14/commits","review_comments_url":"https://api.github.com/repos/nf-core/mhcquant/pulls/14/comments","review_comment_url":"https://api.github.com/repos/nf-core/mhcquant/pulls/comments{/number}","comments_url":"https://api.github.com/repos/nf-core/mhcquant/issues/14/comments","statuses_url":"https://api.github.com/repos/nf-core/mhcquant/statuses/1b1935dd9d5a25f729d0d8fc4202b325a98f5709","head":{"label":"Leon-Bichmann:master","ref":"master","sha":"1b1935dd9d5a25f729d0d8fc4202b325a98f5709","user":{"login":"Leon-Bichmann","id":25149151,"node_id":"MDQ6VXNlcjI1MTQ5MTUx","avatar_url":"https://avatars3.githubusercontent.com/u/25149151?v=4","gravatar_id":"","url":"https://api.github.com/users/Leon-Bichmann","html_url":"https://github.com/Leon-Bichmann","followers_url":"https://api.github.com/users/Leon-Bichmann/followers","following_url":"https://api.github.com/users/Leon-Bichmann/following{/other_user}","gists_url":"https://api.github.com/users/Leon-Bichmann/gists{/gist_id}","starred_url":"https://api.github.com/users/Leon-Bichmann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Leon-Bichmann/subscriptions","organizations_url":"https://api.github.com/users/Leon-Bichmann/orgs","repos_url":"https://api.github.com/users/Leon-Bichmann/repos","events_url":"https://api.github.com/users/Leon-Bichmann/events{/privacy}","received_events_url":"https://api.github.com/users/Leon-Bichmann/received_events","type":"User","site_admin":false},"repo":{"id":154515558,"node_id":"MDEwOlJlcG9zaXRvcnkxNTQ1MTU1NTg=","name":"MHCquant","full_name":"Leon-Bichmann/MHCquant","private":false,"owner":{"login":"Leon-Bichmann","id":25149151,"node_id":"MDQ6VXNlcjI1MTQ5MTUx","avatar_url":"https://avatars3.githubusercontent.com/u/25149151?v=4","gravatar_id":"","url":"https://api.github.com/users/Leon-Bichmann","html_url":"https://github.com/Leon-Bichmann","followers_url":"https://api.github.com/users/Leon-Bichmann/followers","following_url":"https://api.github.com/users/Leon-Bichmann/following{/other_user}","gists_url":"https://api.github.com/users/Leon-Bichmann/gists{/gist_id}","starred_url":"https://api.github.com/users/Leon-Bichmann/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Leon-Bichmann/subscriptions","organizations_url":"https://api.github.com/users/Leon-Bichmann/orgs","repos_url":"https://api.github.com/users/Leon-Bichmann/repos","events_url":"https://api.github.com/users/Leon-Bichmann/events{/privacy}","received_events_url":"https://api.github.com/users/Leon-Bichmann/received_events","type":"User","site_admin":false},"html_url":"https://github.com/Leon-Bichmann/MHCquant","description":"Identify 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