{"action":"created","issue":{"url":"https://api.github.com/repos/tripal/tripal/issues/617","repository_url":"https://api.github.com/repos/tripal/tripal","labels_url":"https://api.github.com/repos/tripal/tripal/issues/617/labels{/name}","comments_url":"https://api.github.com/repos/tripal/tripal/issues/617/comments","events_url":"https://api.github.com/repos/tripal/tripal/issues/617/events","html_url":"https://github.com/tripal/tripal/pull/617","id":355595834,"node_id":"MDExOlB1bGxSZXF1ZXN0MjEyMDg3MzYy","number":617,"title":"added spliced mRNA output if sequence is of type mRNA","user":{"login":"mdondrup","id":893151,"node_id":"MDQ6VXNlcjg5MzE1MQ==","avatar_url":"https://avatars0.githubusercontent.com/u/893151?v=4","gravatar_id":"","url":"https://api.github.com/users/mdondrup","html_url":"https://github.com/mdondrup","followers_url":"https://api.github.com/users/mdondrup/followers","following_url":"https://api.github.com/users/mdondrup/following{/other_user}","gists_url":"https://api.github.com/users/mdondrup/gists{/gist_id}","starred_url":"https://api.github.com/users/mdondrup/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mdondrup/subscriptions","organizations_url":"https://api.github.com/users/mdondrup/orgs","repos_url":"https://api.github.com/users/mdondrup/repos","events_url":"https://api.github.com/users/mdondrup/events{/privacy}","received_events_url":"https://api.github.com/users/mdondrup/received_events","type":"User","site_admin":false},"labels":[{"id":962014932,"node_id":"MDU6TGFiZWw5NjIwMTQ5MzI=","url":"https://api.github.com/repos/tripal/tripal/labels/Ready%20for%20Review","name":"Ready for Review","color":"19a867","default":false},{"id":574384933,"node_id":"MDU6TGFiZWw1NzQzODQ5MzM=","url":"https://api.github.com/repos/tripal/tripal/labels/tripal-7.x-2.x","name":"tripal-7.x-2.x","color":"ffffff","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":8,"created_at":"2018-08-30T13:52:38Z","updated_at":"2018-10-05T16:43:15Z","closed_at":null,"author_association":"NONE","pull_request":{"url":"https://api.github.com/repos/tripal/tripal/pulls/617","html_url":"https://github.com/tripal/tripal/pull/617","diff_url":"https://github.com/tripal/tripal/pull/617.diff","patch_url":"https://github.com/tripal/tripal/pull/617.patch"},"body":"<!--- Provide a general summary of your changes in the Title above -->\r\nI have added a section to the sequence template that outputs aggregated (spliced)\r\nexon sequence for sequences of type mRNA.\r\n\r\n<!--- See our Contribution Guidelines here:\r\n          https://github.com/tripal/tripal/blob/7.x-3.x/CONTRIBUTING.md -->\r\n          \r\n<!--- If it fixes an open issue, please add the issue link below. -->\r\nIssue #\r\n\r\n## Type(s) of Change(s)\r\n<!--- What types of changes does your code introduce? \r\n         Put an `x` in all the boxes that apply: -->\r\n- [ ] Bug fix (non-breaking change which fixes an issue)\r\n- [x] New feature (non-breaking change which adds functionality)\r\n- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)\r\n- [ ] API-specific change (fix or addition to an API function)\r\n- [ ] Updates documentation (inline or markdown files)\r\n\r\n## Description\r\n<!--- Describe your changes in detail -->\r\n<!--- Why is this change required? What problem does it solve? -->\r\nThere was no straight forward way to access the spliced mRNA sequence for a transcript. \r\nUsers wish for a way to retrieve the transcript sequence without introns via copy-paste.\r\nThe \"from alignment\" section shows exon locations highlighted, but to get the actual sequence \r\nwas a bit cumbersome.\r\n\r\n\r\n## Testing?\r\n<!--- Please describe in detail how you tested your changes. -->\r\n\r\nTested on our test site, then moved into the production site.\r\n\r\n<!--- Include details of your testing environment, tests ran to see how -->\r\nPHP 7.1\r\n<!--- your change affects other areas of the code, etc. -->\r\nIt only affects sequences of type mRNA, should not affect other code.\r\n\r\n<!--- Reviewers will use this section to test the submission! -->\r\n\r\n## Screenshots (if appropriate):\r\n\r\n## Additional Notes (if any):\r\n<!--- Go over all the following points, and put an `x` in all the boxes that apply. -->\r\n<!--- If you're unsure about any of these, don't hesitate to ask. We're here to help! -->\r\n- [?] My code follows the code style of this project.\r\n- [ ] My change requires a change to the documentation.\r\n- [ ] I have updated the documentation accordingly.\r\n"},"comment":{"url":"https://api.github.com/repos/tripal/tripal/issues/comments/427427750","html_url":"https://github.com/tripal/tripal/pull/617#issuecomment-427427750","issue_url":"https://api.github.com/repos/tripal/tripal/issues/617","id":427427750,"node_id":"MDEyOklzc3VlQ29tbWVudDQyNzQyNzc1MA==","user":{"login":"bradfordcondon","id":7063154,"node_id":"MDQ6VXNlcjcwNjMxNTQ=","avatar_url":"https://avatars2.githubusercontent.com/u/7063154?v=4","gravatar_id":"","url":"https://api.github.com/users/bradfordcondon","html_url":"https://github.com/bradfordcondon","followers_url":"https://api.github.com/users/bradfordcondon/followers","following_url":"https://api.github.com/users/bradfordcondon/following{/other_user}","gists_url":"https://api.github.com/users/bradfordcondon/gists{/gist_id}","starred_url":"https://api.github.com/users/bradfordcondon/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bradfordcondon/subscriptions","organizations_url":"https://api.github.com/users/bradfordcondon/orgs","repos_url":"https://api.github.com/users/bradfordcondon/repos","events_url":"https://api.github.com/users/bradfordcondon/events{/privacy}","received_events_url":"https://api.github.com/users/bradfordcondon/received_events","type":"User","site_admin":false},"created_at":"2018-10-05T16:43:15Z","updated_at":"2018-10-05T16:43:15Z","author_association":"MEMBER","body":"hi @mdondrup yes please! if you could push the change to your mdondrup fork and 7.x-2.1-licebase branch ( the source of this PR)  then it will auto-update this PR and I can retest.  PLus that way you keep credit for the work :)  "}}
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