{"action":"created","comment":{"url":"https://api.github.com/repos/trilinos/Trilinos/pulls/comments/228561840","pull_request_review_id":168822421,"id":228561840,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIyODU2MTg0MA==","diff_hunk":"@@ -0,0 +1,210 @@\n+\n+//@HEADER\n+// ************************************************************************\n+// \n+//               ShyLU: Hybrid preconditioner package\n+//                 Copyright 2012 Sandia Corporation\n+// \n+// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,\n+// the U.S. Government retains certain rights in this software.\n+//\n+// Redistribution and use in source and binary forms, with or without\n+// modification, are permitted provided that the following conditions are\n+// met:\n+//\n+// 1. Redistributions of source code must retain the above copyright\n+// notice, this list of conditions and the following disclaimer.\n+//\n+// 2. Redistributions in binary form must reproduce the above copyright\n+// notice, this list of conditions and the following disclaimer in the\n+// documentation and/or other materials provided with the distribution.\n+//\n+// 3. Neither the name of the Corporation nor the names of the\n+// contributors may be used to endorse or promote products derived from\n+// this software without specific prior written permission.\n+//\n+// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION \"AS IS\" AND ANY\n+// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\n+// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR\n+// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE\n+// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,\n+// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,\n+// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR\n+// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF\n+// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING\n+// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS\n+// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n+//\n+// Questions? Contact Michael A. Heroux (maherou@sandia.gov) \n+// \n+// ************************************************************************\n+//@HEADER\n+\n+#include <mpi.h>\n+#include \"ShyLU_DDBDDC_config.h\"\n+#if defined(HAVE_SHYLU_DDBDDC_SHYLU_NODETACHO)\n+#include \"Kokkos_Core.hpp\"\n+#endif\n+#include \"shylu_PreconditionerBDDC.h\"\n+#include \"shylu_KrylovSolver.h\"\n+#include \"setupTest.h\"\n+#include <Teuchos_XMLParameterListHelpers.hpp>\n+\n+using Teuchos::RCP;\n+\n+typedef int LO; // Local Ordinal\n+typedef long GO; // Global Ordinal\n+typedef double SX; // floating point data type\n+typedef double SM; // real (magnitude) for SX\n+\n+void readInputFiles(MPI_Comm Comm,\n+\t\t    const std::string fileNamePM, \n+\t\t    const std::string fileNameBDDC, \n+\t\t    const std::string fileNameMueLu, \n+\t\t    const std::string fileNameNodalAMG, \n+\t\t    RCP<Teuchos::ParameterList> & parametersPM,\n+\t\t    RCP<Teuchos::ParameterList> & parametersBDDC,\n+\t\t    RCP<Teuchos::ParameterList> & parametersMueLu,\n+\t\t    RCP<Teuchos::ParameterList> & parametersNodalAMG)\n+{\n+  RCP<const Teuchos::Comm<int> > TComm = \n+    Teuchos::rcp( new Teuchos::MpiComm<int>(Comm) );\n+  Teuchos::ParameterList paramsPM, paramsBDDC, paramsMueLu, paramsNodalAMG;\n+\n+  Teuchos::updateParametersFromXmlFileAndBroadcast\n+    (fileNamePM, Teuchos::Ptr<Teuchos::ParameterList>(&paramsPM), *TComm);\n+  parametersPM = Teuchos::rcp( new Teuchos::ParameterList(paramsPM) );\n+  \n+  Teuchos::updateParametersFromXmlFileAndBroadcast\n+    (fileNameBDDC, Teuchos::Ptr<Teuchos::ParameterList>(&paramsBDDC), *TComm);\n+  parametersBDDC = Teuchos::rcp( new Teuchos::ParameterList(paramsBDDC) );\n+\n+  if (fileNameMueLu != \"\") {\n+    Teuchos::updateParametersFromXmlFileAndBroadcast\n+      (fileNameMueLu, Teuchos::Ptr<Teuchos::ParameterList>(&paramsMueLu), \n+       *TComm);\n+    parametersMueLu = Teuchos::rcp( new Teuchos::ParameterList(paramsMueLu) );\n+  }\n+\n+  if (fileNameNodalAMG != \"\") {\n+    Teuchos::updateParametersFromXmlFileAndBroadcast\n+      (fileNameNodalAMG, Teuchos::Ptr<Teuchos::ParameterList>(&paramsNodalAMG),\n+       *TComm);\n+    parametersNodalAMG = \n+      Teuchos::rcp( new Teuchos::ParameterList(paramsNodalAMG) );\n+  }\n+}\n+\n+void runTest(RCP<Teuchos::ParameterList> & parametersPM,\n+\t     RCP<Teuchos::ParameterList> & parametersBDDC,\n+\t     RCP<Teuchos::ParameterList> & parametersMueLu,\n+\t     RCP<Teuchos::ParameterList> & parametersNodalAMG,\n+\t     const std::string meshDataFile,\n+\t     const int myPID,\n+\t     MPI_Comm Comm,\n+\t     const bool resetFile,\n+\t     int & numIterations)\n+{\n+  // setup test data\n+  bddc::setupTest<LO,GO,SX,SM> \n+    test(parametersPM, parametersBDDC, parametersMueLu,\n+\t parametersNodalAMG, meshDataFile, Comm);\n+  LO numNode, *nodeBegin(nullptr), *localDofs(nullptr);\n+  const GO *nodeGlobalIDs(nullptr);\n+  const SM *xCoord(nullptr), *yCoord(nullptr), *zCoord(nullptr);\n+  std::vector<LO*> subRowBeginPtr, subColumnsPtr;","path":"packages/shylu/shylu_dd/bddc/example/example1.C","position":115,"original_position":115,"commit_id":"c33cc56b8dda285cb817c9a2ef5efea9bdace050","original_commit_id":"c33cc56b8dda285cb817c9a2ef5efea9bdace050","user":{"login":"mhoemmen","id":926747,"node_id":"MDQ6VXNlcjkyNjc0Nw==","avatar_url":"https://avatars0.githubusercontent.com/u/926747?v=4","gravatar_id":"","url":"https://api.github.com/users/mhoemmen","html_url":"https://github.com/mhoemmen","followers_url":"https://api.github.com/users/mhoemmen/followers","following_url":"https://api.github.com/users/mhoemmen/following{/other_user}","gists_url":"https://api.github.com/users/mhoemmen/gists{/gist_id}","starred_url":"https://api.github.com/users/mhoemmen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mhoemmen/subscriptions","organizations_url":"https://api.github.com/users/mhoemmen/orgs","repos_url":"https://api.github.com/users/mhoemmen/repos","events_url":"https://api.github.com/users/mhoemmen/events{/privacy}","received_events_url":"https://api.github.com/users/mhoemmen/received_events","type":"User","site_admin":false},"body":"`std::vector` of raw pointer suggests a memory leak to me.  Do those inner pointers get freed / cleaned up at some point?","created_at":"2018-10-26T15:04:42Z","updated_at":"2018-10-26T15:42:23Z","html_url":"https://github.com/trilinos/Trilinos/pull/3738#discussion_r228561840","pull_request_url":"https://api.github.com/repos/trilinos/Trilinos/pulls/3738","author_association":"CONTRIBUTOR","_links":{"self":{"href":"https://api.github.com/repos/trilinos/Trilinos/pulls/comments/228561840"},"html":{"href":"https://github.com/trilinos/Trilinos/pull/3738#discussion_r228561840"},"pull_request":{"href":"https://api.github.com/repos/trilinos/Trilinos/pulls/3738"}}},"pull_request":{"url":"https://api.github.com/repos/trilinos/Trilinos/pulls/3738","id":225951888,"node_id":"MDExOlB1bGxSZXF1ZXN0MjI1OTUxODg4","html_url":"https://github.com/trilinos/Trilinos/pull/3738","diff_url":"https://github.com/trilinos/Trilinos/pull/3738.diff","patch_url":"https://github.com/trilinos/Trilinos/pull/3738.patch","issue_url":"https://api.github.com/repos/trilinos/Trilinos/issues/3738","number":3738,"state":"open","locked":false,"title":"Bddc","user":{"login":"crdohrm","id":15929640,"node_id":"MDQ6VXNlcjE1OTI5NjQw","avatar_url":"https://avatars2.githubusercontent.com/u/15929640?v=4","gravatar_id":"","url":"https://api.github.com/users/crdohrm","html_url":"https://github.com/crdohrm","followers_url":"https://api.github.com/users/crdohrm/followers","following_url":"https://api.github.com/users/crdohrm/following{/other_user}","gists_url":"https://api.github.com/users/crdohrm/gists{/gist_id}","starred_url":"https://api.github.com/users/crdohrm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/crdohrm/subscriptions","organizations_url":"https://api.github.com/users/crdohrm/orgs","repos_url":"https://api.github.com/users/crdohrm/repos","events_url":"https://api.github.com/users/crdohrm/events{/privacy}","received_events_url":"https://api.github.com/users/crdohrm/received_events","type":"User","site_admin":false},"body":"<!---\r\nLot's of changes/additions to the BDDC preconditioner in shylu/shylu_dd since last time.\r\n\r\nBe sure to select `develop` as the `base` branch against which to create this\r\npull request.  Only pull requests against `develop` will undergo Trilinos'\r\nautomated testing.  Pull requests against `master` will be ignored.\r\n\r\nProvide a general summary of your changes in the Title above.  If this pull\r\nrequest pertains to a particular package in Trilinos, it's worthwhile to start\r\nthe title with \"PackageName:  \".\r\n\r\nNote that anything between these delimiters is a comment that will not appear\r\nin the pull request description once created. Most areas in this message are\r\ncommented out and can be easily added by removing the comment delimiters.\r\n\r\nPlease make sure to mark:\r\n* Reviewers Siva Rajamanickam\r\n* Assignees\r\n* Labels\r\n\r\nReplace <teamName> below with the appropriate Trilinos package/team name.\r\n-->\r\n@trilinos/<ShyLu>\r\n\r\n## Description\r\n<!--- Please describe your changes in detail. -->\r\n\r\n## Motivation and Context\r\n<!--- Why is this change required?  What problem does it solve? -->\r\n\r\n<!---\r\nIf applicable, let us know how this merge request is related to any other open\r\nissues or pull requests:\r\n\r\n## Related Issues\r\n\r\n* Closes \r\n* Blocks \r\n* Is blocked by \r\n* Follows \r\n* Precedes \r\n* Related to \r\n* Part of \r\n* Composed of \r\n-->\r\n\r\n## How Has This Been Tested?\r\n<!---\r\nPlease describe in detail how you tested your changes.  Include details of your\r\ntesting environment and the tests you ran to see how your change affects other\r\nareas of the code.  Consider including configure, build, and test log files.\r\n-->\r\n\r\n<!--- \r\n## Screenshots\r\nNot obligatory, but is there anything pertinent that we should see?\r\n -->\r\n\r\n<!---\r\nGo over all the following points, and put an `x` in all the boxes that apply.\r\nIf you are unsure about any of these, please ask&mdash;we are here to help.\r\n-->\r\n\r\n## Checklist\r\n\r\n- [ ] My commit messages mention the appropriate GitHub issue numbers.\r\n- [ ] My code follows the code style of the affected package(s).\r\n- [ ] My change requires a change to the documentation.\r\n- [ ] I have updated the documentation accordingly.\r\n- [ ] I have read the [code contribution guidelines](../blob/master/CONTRIBUTING.md) for this project.\r\n- [ ] I have added tests to cover my changes.\r\n- [ ] All new and existing tests passed.\r\n- [ ] No new compiler warnings were introduced.\r\n- [ ] These changes break backwards compatibility.\r\n\r\n<!--- \r\n## Additional Information\r\nAnything else we need to know in evaluating this merge request?\r\n -->\r\n","created_at":"2018-10-26T01:36:25Z","updated_at":"2018-10-26T15:42:23Z","closed_at":null,"merged_at":null,"merge_commit_sha":"93217a894e5f70afd80335da86707891a2b864cb","assignee":null,"assignees":[],"requested_reviewers":[],"requested_teams":[],"labels":[{"id":333835892,"node_id":"MDU6TGFiZWwzMzM4MzU4OTI=","url":"https://api.github.com/repos/trilinos/Trilinos/labels/ShyLU","name":"ShyLU","color":"207de5","default":false},{"id":318642986,"node_id":"MDU6TGFiZWwzMTg2NDI5ODY=","url":"https://api.github.com/repos/trilinos/Trilinos/labels/in%20progress","name":"in 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