{"action":"created","issue":{"url":"https://api.github.com/repos/magicDGS/ReadTools/issues/424","repository_url":"https://api.github.com/repos/magicDGS/ReadTools","labels_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/424/labels{/name}","comments_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/424/comments","events_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/424/events","html_url":"https://github.com/magicDGS/ReadTools/issues/424","id":309675308,"number":424,"title":"Port TagByWindow from private repository (or only statistic)","user":{"login":"magicDGS","id":7352559,"avatar_url":"https://avatars0.githubusercontent.com/u/7352559?v=4","gravatar_id":"","url":"https://api.github.com/users/magicDGS","html_url":"https://github.com/magicDGS","followers_url":"https://api.github.com/users/magicDGS/followers","following_url":"https://api.github.com/users/magicDGS/following{/other_user}","gists_url":"https://api.github.com/users/magicDGS/gists{/gist_id}","starred_url":"https://api.github.com/users/magicDGS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/magicDGS/subscriptions","organizations_url":"https://api.github.com/users/magicDGS/orgs","repos_url":"https://api.github.com/users/magicDGS/repos","events_url":"https://api.github.com/users/magicDGS/events{/privacy}","received_events_url":"https://api.github.com/users/magicDGS/received_events","type":"User","site_admin":false},"labels":[{"id":908347502,"url":"https://api.github.com/repos/magicDGS/ReadTools/labels/Priority:%20Low","name":"Priority: Low","color":"0e8a16","default":false},{"id":908350272,"url":"https://api.github.com/repos/magicDGS/ReadTools/labels/Status:%20Blocked","name":"Status: Blocked","color":"d93f0b","default":false},{"id":911363859,"url":"https://api.github.com/repos/magicDGS/ReadTools/labels/Type:%20Epic","name":"Type: Epic","color":"5319e0","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/magicDGS/ReadTools/milestones/9","html_url":"https://github.com/magicDGS/ReadTools/milestone/9","labels_url":"https://api.github.com/repos/magicDGS/ReadTools/milestones/9/labels","id":3071745,"number":9,"title":"Release candidate","description":"","creator":{"login":"magicDGS","id":7352559,"avatar_url":"https://avatars0.githubusercontent.com/u/7352559?v=4","gravatar_id":"","url":"https://api.github.com/users/magicDGS","html_url":"https://github.com/magicDGS","followers_url":"https://api.github.com/users/magicDGS/followers","following_url":"https://api.github.com/users/magicDGS/following{/other_user}","gists_url":"https://api.github.com/users/magicDGS/gists{/gist_id}","starred_url":"https://api.github.com/users/magicDGS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/magicDGS/subscriptions","organizations_url":"https://api.github.com/users/magicDGS/orgs","repos_url":"https://api.github.com/users/magicDGS/repos","events_url":"https://api.github.com/users/magicDGS/events{/privacy}","received_events_url":"https://api.github.com/users/magicDGS/received_events","type":"User","site_admin":false},"open_issues":51,"closed_issues":3,"state":"open","created_at":"2018-01-29T14:53:55Z","updated_at":"2018-04-23T17:13:16Z","due_on":null,"closed_at":null},"comments":0,"created_at":"2018-03-29T09:05:35Z","updated_at":"2018-04-23T17:24:49Z","closed_at":null,"author_association":"OWNER","body":"In two of my private repositories (in BitBucket, concretely `TagByWindowHash` and `JavaTools`, which only contains the `TagByWindow` tool and some random utilities) I have several implementations of a computation of a mapping statistic by window for reads where a tag is larger/lower than a threshold. This is useful for computing a custom statistic for a manuscript in preparation (_PD<sub>NM&ge;x</sub>_), but it is more flexible and allows to compute it for every numeric tag and threshold.\r\n\r\nUsing the GATK framework (read or sliding-window walker), this can be ported to have a reference implementation for the manuscript and allow to compute the statistic. See also #207, which is related, because it was supposed to be where the port would be added instead. "},"comment":{"url":"https://api.github.com/repos/magicDGS/ReadTools/issues/comments/383655328","html_url":"https://github.com/magicDGS/ReadTools/issues/424#issuecomment-383655328","issue_url":"https://api.github.com/repos/magicDGS/ReadTools/issues/424","id":383655328,"user":{"login":"magicDGS","id":7352559,"avatar_url":"https://avatars0.githubusercontent.com/u/7352559?v=4","gravatar_id":"","url":"https://api.github.com/users/magicDGS","html_url":"https://github.com/magicDGS","followers_url":"https://api.github.com/users/magicDGS/followers","following_url":"https://api.github.com/users/magicDGS/following{/other_user}","gists_url":"https://api.github.com/users/magicDGS/gists{/gist_id}","starred_url":"https://api.github.com/users/magicDGS/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/magicDGS/subscriptions","organizations_url":"https://api.github.com/users/magicDGS/orgs","repos_url":"https://api.github.com/users/magicDGS/repos","events_url":"https://api.github.com/users/magicDGS/events{/privacy}","received_events_url":"https://api.github.com/users/magicDGS/received_events","type":"User","site_admin":false},"created_at":"2018-04-23T17:24:49Z","updated_at":"2018-04-23T17:24:49Z","author_association":"OWNER","body":"Blocked: requires GATK4 with sliding-window walker."}}
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