{"action":"closed","issue":{"url":"https://api.github.com/repos/brentp/hts-nim/issues/25","repository_url":"https://api.github.com/repos/brentp/hts-nim","labels_url":"https://api.github.com/repos/brentp/hts-nim/issues/25/labels{/name}","comments_url":"https://api.github.com/repos/brentp/hts-nim/issues/25/comments","events_url":"https://api.github.com/repos/brentp/hts-nim/issues/25/events","html_url":"https://github.com/brentp/hts-nim/issues/25","id":357086736,"node_id":"MDU6SXNzdWUzNTcwODY3MzY=","number":25,"title":"Q: how to read BAM from internally generated stream","user":{"login":"andreas-wilm","id":1095945,"node_id":"MDQ6VXNlcjEwOTU5NDU=","avatar_url":"https://avatars1.githubusercontent.com/u/1095945?v=4","gravatar_id":"","url":"https://api.github.com/users/andreas-wilm","html_url":"https://github.com/andreas-wilm","followers_url":"https://api.github.com/users/andreas-wilm/followers","following_url":"https://api.github.com/users/andreas-wilm/following{/other_user}","gists_url":"https://api.github.com/users/andreas-wilm/gists{/gist_id}","starred_url":"https://api.github.com/users/andreas-wilm/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/andreas-wilm/subscriptions","organizations_url":"https://api.github.com/users/andreas-wilm/orgs","repos_url":"https://api.github.com/users/andreas-wilm/repos","events_url":"https://api.github.com/users/andreas-wilm/events{/privacy}","received_events_url":"https://api.github.com/users/andreas-wilm/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2018-09-05T06:44:14Z","updated_at":"2018-09-05T17:42:15Z","closed_at":"2018-09-05T17:42:15Z","author_association":"CONTRIBUTOR","body":"Hi Brent,\r\n\r\nwhat's the recommended way to parse internally generated BAM streams? The use case here is that I call BWA internally using `osproc`, returning lines on stdout as iterator. `open()` can't be used, unless I use a named pipe as intermediate. Is there a way to generate a Record from a SAM/BAM line?\r\n\r\nThanks,\r\nAndreas"}}
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