{"action":"created","comment":{"url":"https://api.github.com/repos/sxs-collaboration/spectre/pulls/comments/218816356","pull_request_review_id":156837150,"id":218816356,"node_id":"MDI0OlB1bGxSZXF1ZXN0UmV2aWV3Q29tbWVudDIxODgxNjM1Ng==","diff_hunk":"@@ -0,0 +1,168 @@\n+// Distributed under the MIT License.\n+// See LICENSE.txt for details.\n+\n+#pragma once\n+\n+#include <cstddef>\n+\n+#include \"DataStructures/DataBox/DataBoxTag.hpp\"\n+#include \"DataStructures/DataBox/Prefixes.hpp\"\n+#include \"DataStructures/Tensor/TypeAliases.hpp\"\n+#include \"DataStructures/Variables.hpp\"\n+#include \"Domain/FaceNormal.hpp\"\n+#include \"Domain/Tags.hpp\"\n+#include \"NumericalAlgorithms/LinearOperators/PartialDerivatives.hpp\"\n+#include \"Options/Options.hpp\"\n+#include \"Utilities/ContainerHelpers.hpp\"\n+#include \"Utilities/TMPL.hpp\"\n+\n+class DataVector;\n+template <size_t>\n+class Mesh;\n+\n+namespace Tags {\n+template <typename>\n+struct Normalized;\n+}  // namespace Tags\n+\n+namespace LinearSolver {\n+namespace Tags {\n+template <typename>\n+struct Operand;\n+}  // namespace Tags\n+}  // namespace LinearSolver\n+\n+namespace Poisson {\n+struct Field;\n+template <size_t>\n+struct AuxiliaryField;\n+}  // namespace Poisson\n+\n+namespace Poisson {\n+\n+template <size_t Dim>\n+struct ComputeMixedVolume {\n+  using argument_tags =\n+      tmpl::list<Tags::deriv<LinearSolver::Tags::Operand<Field>,\n+                             tmpl::size_t<Dim>, Frame::Inertial>,\n+                 LinearSolver::Tags::Operand<AuxiliaryField<Dim>>,\n+                 Tags::Mesh<Dim>,\n+                 Tags::InverseJacobian<Tags::ElementMap<Dim>,\n+                                       Tags::Coordinates<Dim, Frame::Logical>>>;\n+  static void apply(\n+      const gsl::not_null<Scalar<DataVector>*> volume_for_field_source,\n+      const gsl::not_null<tnsr::I<DataVector, Dim, Frame::Inertial>*>\n+          volume_for_auxiliary_field_source,\n+      const tnsr::i<DataVector, Dim, Frame::Inertial>& grad_field,\n+      const tnsr::I<DataVector, Dim, Frame::Inertial>& auxiliary_field,\n+      const Mesh<Dim>& mesh,\n+      const InverseJacobian<DataVector, Dim, Frame::Logical, Frame::Inertial>&\n+          inverse_jacobian) noexcept;\n+};\n+\n+template <size_t Dim>\n+struct ComputeMixedNormalDotFluxes {\n+  using argument_tags =\n+      tmpl::list<LinearSolver::Tags::Operand<Field>,\n+                 LinearSolver::Tags::Operand<AuxiliaryField<Dim>>,\n+                 Tags::Normalized<Tags::UnnormalizedFaceNormal<Dim>>>;\n+  static void apply(\n+      gsl::not_null<Scalar<DataVector>*> normal_dot_flux_for_field,\n+      gsl::not_null<tnsr::I<DataVector, Dim, Frame::Inertial>*>\n+          normal_dot_flux_for_auxiliary_field,\n+      const Scalar<DataVector>& field,\n+      const tnsr::I<DataVector, Dim, Frame::Inertial>& auxiliary_field,\n+      const tnsr::i<DataVector, Dim, Frame::Inertial>&\n+          interface_unit_normal) noexcept;\n+};\n+\n+template <size_t Dim>\n+struct InternalPenaltyFlux {\n+ public:\n+  struct PenaltyParameter {\n+    using type = double;\n+    // Currently this is used as the full prefactor to the penalty term. When it\n+    // becomes possible to compute a measure of the size $h$ of an element and\n+    // the polynomial degree $p$ on both sides of the mortar, this should be\n+    // changed to be just the parameter multiplying $\\frac{p^2}{h}$.\n+    static constexpr OptionString help = {\n+        \"The prefactor to the penalty term of the flux.\"};\n+  };\n+  using options = tmpl::list<PenaltyParameter>;\n+  static constexpr OptionString help = {\n+      \"Computes the internal penalty flux for a poisson system.\"};\n+\n+  InternalPenaltyFlux() = default;\n+  InternalPenaltyFlux(double penalty_parameter)\n+      : penalty_parameter_(std::move(penalty_parameter)) {}\n+\n+  // clang-tidy: non-const reference\n+  void pup(PUP::er& p) noexcept { p | penalty_parameter_; }  // NOLINT\n+\n+  struct NormalTimesFieldFlux : db::SimpleTag {\n+    using type = tnsr::i<DataVector, Dim, Frame::Inertial>;\n+    static std::string name() noexcept { return \"NormalDotGradFieldFlux\"; }\n+    static constexpr bool should_be_sliced_to_boundary = true;\n+  };\n+\n+  struct NormalDotGradFieldFlux : db::SimpleTag {\n+    using type = Scalar<DataVector>;\n+    static std::string name() noexcept { return \"NormalDotGradFieldFlux\"; }\n+    static constexpr bool should_be_sliced_to_boundary = true;\n+  };\n+\n+  // These tags are sliced to the interface of the element and passed to\n+  // `package_data` to provide the data needed to compute the numerical fluxes.\n+  using argument_tags =\n+      tmpl::list<LinearSolver::Tags::Operand<Field>,\n+                 Tags::deriv<LinearSolver::Tags::Operand<Field>,\n+                             tmpl::size_t<Dim>, Frame::Inertial>,\n+                 Tags::Normalized<Tags::UnnormalizedFaceNormal<Dim>>>;\n+\n+  // This is the data needed to compute the numerical flux.\n+  // `SendBoundaryFluxes` calls `package_data` to store these tags in a\n+  // Variables. Local and remote values of this data are then combined in the\n+  // `()` operator.\n+  using package_tags = tmpl::list<LinearSolver::Tags::Operand<Field>,\n+                                  NormalTimesFieldFlux, NormalDotGradFieldFlux>;\n+\n+  // Following the packaged_data pointer, this function expects as arguments the\n+  // types in `argument_tags`.\n+  void package_data(gsl::not_null<Variables<package_tags>*> packaged_data,\n+                    const Scalar<DataVector>& field,\n+                    const tnsr::i<DataVector, Dim, Frame::Inertial>& grad_field,\n+                    const tnsr::i<DataVector, Dim, Frame::Inertial>&\n+                        interface_unit_normal) const noexcept;\n+\n+  // This function provides an opportunity to transform what is used as remote\n+  // data on external boundaries. An empty implementation means that the local\n+  // data is copied and used as remote data as-is. However, sign flips must be\n+  // performed here for quantities that involve the face normal. Furthermore, to\n+  // impose vanishing Dirichlet boundary conditions we can invert the remote\n+  // field value here.\n+  void transform_boundary_data(","path":"src/Elliptic/Systems/Poisson/Equations.hpp","position":143,"original_position":143,"commit_id":"badcaaeabd70640447c996decd0fe60c2a72c457","original_commit_id":"badcaaeabd70640447c996decd0fe60c2a72c457","user":{"login":"nilsleiffischer","id":746230,"node_id":"MDQ6VXNlcjc0NjIzMA==","avatar_url":"https://avatars2.githubusercontent.com/u/746230?v=4","gravatar_id":"","url":"https://api.github.com/users/nilsleiffischer","html_url":"https://github.com/nilsleiffischer","followers_url":"https://api.github.com/users/nilsleiffischer/followers","following_url":"https://api.github.com/users/nilsleiffischer/following{/other_user}","gists_url":"https://api.github.com/users/nilsleiffischer/gists{/gist_id}","starred_url":"https://api.github.com/users/nilsleiffischer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nilsleiffischer/subscriptions","organizations_url":"https://api.github.com/users/nilsleiffischer/orgs","repos_url":"https://api.github.com/users/nilsleiffischer/repos","events_url":"https://api.github.com/users/nilsleiffischer/events{/privacy}","received_events_url":"https://api.github.com/users/nilsleiffischer/received_events","type":"User","site_admin":false},"body":"yes","created_at":"2018-09-19T14:03:44Z","updated_at":"2018-09-19T14:03:45Z","html_url":"https://github.com/sxs-collaboration/spectre/pull/866#discussion_r218816356","pull_request_url":"https://api.github.com/repos/sxs-collaboration/spectre/pulls/866","author_association":"MEMBER","_links":{"self":{"href":"https://api.github.com/repos/sxs-collaboration/spectre/pulls/comments/218816356"},"html":{"href":"https://github.com/sxs-collaboration/spectre/pull/866#discussion_r218816356"},"pull_request":{"href":"https://api.github.com/repos/sxs-collaboration/spectre/pulls/866"}},"in_reply_to_id":217502741},"pull_request":{"url":"https://api.github.com/repos/sxs-collaboration/spectre/pulls/866","id":208097646,"node_id":"MDExOlB1bGxSZXF1ZXN0MjA4MDk3NjQ2","html_url":"https://github.com/sxs-collaboration/spectre/pull/866","diff_url":"https://github.com/sxs-collaboration/spectre/pull/866.diff","patch_url":"https://github.com/sxs-collaboration/spectre/pull/866.patch","issue_url":"https://api.github.com/repos/sxs-collaboration/spectre/issues/866","number":866,"state":"open","locked":false,"title":"Add Poisson system","user":{"login":"nilsleiffischer","id":746230,"node_id":"MDQ6VXNlcjc0NjIzMA==","avatar_url":"https://avatars2.githubusercontent.com/u/746230?v=4","gravatar_id":"","url":"https://api.github.com/users/nilsleiffischer","html_url":"https://github.com/nilsleiffischer","followers_url":"https://api.github.com/users/nilsleiffischer/followers","following_url":"https://api.github.com/users/nilsleiffischer/following{/other_user}","gists_url":"https://api.github.com/users/nilsleiffischer/gists{/gist_id}","starred_url":"https://api.github.com/users/nilsleiffischer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/nilsleiffischer/subscriptions","organizations_url":"https://api.github.com/users/nilsleiffischer/orgs","repos_url":"https://api.github.com/users/nilsleiffischer/repos","events_url":"https://api.github.com/users/nilsleiffischer/events{/privacy}","received_events_url":"https://api.github.com/users/nilsleiffischer/received_events","type":"User","site_admin":false},"body":"## Proposed changes\r\n\r\nThis PR adds the volume terms and fluxes to prepare for the first elliptic executable.\r\n\r\n- [x] TODO: Improve documentation\r\n- [x] Depends on #854\r\n\r\n### Types of changes:\r\n\r\n- [x] New feature\r\n\r\n### Component:\r\n\r\n- [x] Code\r\n\r\n### Code review checklist\r\n\r\n- [ ] The PR passes all checks, including unit tests, `clang-tidy` and `IWYU`. For\r\n  instructions on how to perform the CI checks locally refer to the [Dev guide\r\n  on the Travis CI](https://spectre-code.org/travis_guide.html).\r\n- [ ] The code is documented and the documentation renders correctly. Run `make doc`\r\n  to generate the documentation locally into `BUILD_DIR/docs/html`. Then open\r\n  `index.html`.\r\n- [ ] The code follows the stylistic and code quality guidelines listed in the\r\n  [code review guide](https://spectre-code.org/code_review_guide.html).\r\n","created_at":"2018-08-13T20:41:24Z","updated_at":"2018-09-19T14:03:45Z","closed_at":null,"merged_at":null,"merge_commit_sha":"b9c89553fe1e860b9ea14a00580aa43f9f9aa81e","assignee":null,"assignees":[],"requested_reviewers":[],"requested_teams":[],"labels":[{"id":1037645770,"node_id":"MDU6TGFiZWwxMDM3NjQ1Nzcw","url":"https://api.github.com/repos/sxs-collaboration/spectre/labels/new%20design","name":"new 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