{"action":"created","issue":{"url":"https://api.github.com/repos/bbuchfink/diamond/issues/96","repository_url":"https://api.github.com/repos/bbuchfink/diamond","labels_url":"https://api.github.com/repos/bbuchfink/diamond/issues/96/labels{/name}","comments_url":"https://api.github.com/repos/bbuchfink/diamond/issues/96/comments","events_url":"https://api.github.com/repos/bbuchfink/diamond/issues/96/events","html_url":"https://github.com/bbuchfink/diamond/issues/96","id":191505041,"number":96,"title":"Adding an option for identity filtering?","user":{"login":"wdingx","id":19961652,"avatar_url":"https://avatars.githubusercontent.com/u/19961652?v=3","gravatar_id":"","url":"https://api.github.com/users/wdingx","html_url":"https://github.com/wdingx","followers_url":"https://api.github.com/users/wdingx/followers","following_url":"https://api.github.com/users/wdingx/following{/other_user}","gists_url":"https://api.github.com/users/wdingx/gists{/gist_id}","starred_url":"https://api.github.com/users/wdingx/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/wdingx/subscriptions","organizations_url":"https://api.github.com/users/wdingx/orgs","repos_url":"https://api.github.com/users/wdingx/repos","events_url":"https://api.github.com/users/wdingx/events{/privacy}","received_events_url":"https://api.github.com/users/wdingx/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-11-24T12:10:33Z","updated_at":"2016-11-24T12:34:46Z","closed_at":null,"body":"The percentage of sequence identity and the alignment coverage have been widely used in pan-genome studies to identify orthologous relationship.\r\nIn diamond, the alignment coverage can be adjusted via --query-cover, whereas something like --identity has not yet been included in the parameter options.\r\nIt would be very useful to add an option like --identity to report only matches above the given percentage of identity.\r\nThank you for your consideration.\r\n"},"comment":{"url":"https://api.github.com/repos/bbuchfink/diamond/issues/comments/262766539","html_url":"https://github.com/bbuchfink/diamond/issues/96#issuecomment-262766539","issue_url":"https://api.github.com/repos/bbuchfink/diamond/issues/96","id":262766539,"user":{"login":"bbuchfink","id":10001338,"avatar_url":"https://avatars.githubusercontent.com/u/10001338?v=3","gravatar_id":"","url":"https://api.github.com/users/bbuchfink","html_url":"https://github.com/bbuchfink","followers_url":"https://api.github.com/users/bbuchfink/followers","following_url":"https://api.github.com/users/bbuchfink/following{/other_user}","gists_url":"https://api.github.com/users/bbuchfink/gists{/gist_id}","starred_url":"https://api.github.com/users/bbuchfink/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bbuchfink/subscriptions","organizations_url":"https://api.github.com/users/bbuchfink/orgs","repos_url":"https://api.github.com/users/bbuchfink/repos","events_url":"https://api.github.com/users/bbuchfink/events{/privacy}","received_events_url":"https://api.github.com/users/bbuchfink/received_events","type":"User","site_admin":false},"created_at":"2016-11-24T12:34:46Z","updated_at":"2016-11-24T12:34:46Z","body":"There is an option --id to filter alignments below a certain identity%. For some reason it is not contained in the manual, sorry I need to fix that."}}
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