{"action":"created","issue":{"url":"https://api.github.com/repos/Microsoft/BashOnWindows/issues/785","repository_url":"https://api.github.com/repos/Microsoft/BashOnWindows","labels_url":"https://api.github.com/repos/Microsoft/BashOnWindows/issues/785/labels{/name}","comments_url":"https://api.github.com/repos/Microsoft/BashOnWindows/issues/785/comments","events_url":"https://api.github.com/repos/Microsoft/BashOnWindows/issues/785/events","html_url":"https://github.com/Microsoft/BashOnWindows/issues/785","id":169660546,"number":785,"title":"Anaconda's scipy.test() fails with \"OMP: Error #100: Fatal system error detected","user":{"login":"Evfro","id":5283394,"avatar_url":"https://avatars.githubusercontent.com/u/5283394?v=3","gravatar_id":"","url":"https://api.github.com/users/Evfro","html_url":"https://github.com/Evfro","followers_url":"https://api.github.com/users/Evfro/followers","following_url":"https://api.github.com/users/Evfro/following{/other_user}","gists_url":"https://api.github.com/users/Evfro/gists{/gist_id}","starred_url":"https://api.github.com/users/Evfro/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Evfro/subscriptions","organizations_url":"https://api.github.com/users/Evfro/orgs","repos_url":"https://api.github.com/users/Evfro/repos","events_url":"https://api.github.com/users/Evfro/events{/privacy}","received_events_url":"https://api.github.com/users/Evfro/received_events","type":"User","site_admin":false},"labels":[{"id":468076750,"url":"https://api.github.com/repos/Microsoft/BashOnWindows/labels/python","name":"python","color":"1d76db","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":14,"created_at":"2016-08-05T17:48:37Z","updated_at":"2016-11-19T23:33:22Z","closed_at":null,"body":"- A brief description\n\nSciPy is a python package for scientific computing. Normally it's installed with Anaconda distribution, that also ships Intel's MKL library (with LAPACK and BLAS routines).\n- Expected results\n\nExecuting `scipy.test()` from within python completes with the report on all errors and failures discovered.\n- Actual results (with terminal output if applicable)\n\n`scipy.test()` doesn't complete and terminates python with the following error:\n\n```\nOMP: Error #100: Fatal system error detected.\nOMP: System error #22: Invalid argument\nAborted (core dumped)\n```\n- Your Windows build number\n\nMicrosoft Windows [Version 10.0.14393]\n- Steps / commands required to reproduce the error\n\nRun from terminal:\n\n``` bash\npython -c 'import scipy; scipy.test()'\n```\n- Strace of the failing command\n\nhttps://gist.github.com/Evfro/2d0d83745a92d3f6e2f52ce3675a273d\n\nThe last thing before error there is the following line:\n`sched_getaffinity(0, 4, 0x7fc7757a7e00) = -1 EINVAL (Invalid argument)`\n- Required packages and commands to install\n\nInstall latest miniconda (Python 2.7):\n\n``` bash\nwget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh\nbash Miniconda*.sh\n```\n\nUpdate apt-get (prevents some errors):\n\n``` bash\nsudo apt-get update -qq\n```\n\nInstall scipy, numpy and nose (for running tests):\n\n``` bash\nconda install numpy scipy nose\n```\n\nThis will additionally install MKL and libgfortran-3. \n**Note**: test doesn't fail if _nomkl_ versions of numpy and scipy are installed, however, MKL (especially its LAPACK and BLAS) is required for some other packages, so it's not really an option.\n"},"comment":{"url":"https://api.github.com/repos/Microsoft/BashOnWindows/issues/comments/261747162","html_url":"https://github.com/Microsoft/BashOnWindows/issues/785#issuecomment-261747162","issue_url":"https://api.github.com/repos/Microsoft/BashOnWindows/issues/785","id":261747162,"user":{"login":"deto","id":551879,"avatar_url":"https://avatars.githubusercontent.com/u/551879?v=3","gravatar_id":"","url":"https://api.github.com/users/deto","html_url":"https://github.com/deto","followers_url":"https://api.github.com/users/deto/followers","following_url":"https://api.github.com/users/deto/following{/other_user}","gists_url":"https://api.github.com/users/deto/gists{/gist_id}","starred_url":"https://api.github.com/users/deto/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/deto/subscriptions","organizations_url":"https://api.github.com/users/deto/orgs","repos_url":"https://api.github.com/users/deto/repos","events_url":"https://api.github.com/users/deto/events{/privacy}","received_events_url":"https://api.github.com/users/deto/received_events","type":"User","site_admin":false},"created_at":"2016-11-19T23:33:22Z","updated_at":"2016-11-19T23:33:22Z","body":"Can't you also run do-release-upgrade?  So you don't lose all your files?\n\nOn Nov 19, 2016 2:42 PM, \"Michael Hirsch\" <notifications@github.com> wrote:\n\n> You need Windows 14936 or newer, and no it will not autoupgrade, even when\n> you get the latest build.\n> To upgrade WSL from Ubuntu 14.04 to Ubuntu 16.04, from *Windows Command\n> Prompt*\n>\n> lxrun /uninstall\n> lxrun /install\n>\n> That erases everything but your home directory (in the Ubuntu lxss folder)\n> so backup anything you might need.\n>\n> —\n> You are receiving this because you commented.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/Microsoft/BashOnWindows/issues/785#issuecomment-261744667>,\n> or mute the thread\n> <https://github.com/notifications/unsubscribe-auth/AAhrx8YV96Cxh8PsNLNj8_GrV5e1QiZqks5q_3tUgaJpZM4Jd6On>\n> .\n>\n"}}
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