{"action":"created","issue":{"url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2671","repository_url":"https://api.github.com/repos/Homebrew/homebrew-science","labels_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2671/labels{/name}","comments_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2671/comments","events_url":"https://api.github.com/repos/Homebrew/homebrew-science/issues/2671/events","html_url":"https://github.com/Homebrew/homebrew-science/pull/2671","id":101859180,"number":2671,"title":"kat 2.1.0","user":{"login":"maplesond","id":3940628,"avatar_url":"https://avatars.githubusercontent.com/u/3940628?v=3","gravatar_id":"","url":"https://api.github.com/users/maplesond","html_url":"https://github.com/maplesond","followers_url":"https://api.github.com/users/maplesond/followers","following_url":"https://api.github.com/users/maplesond/following{/other_user}","gists_url":"https://api.github.com/users/maplesond/gists{/gist_id}","starred_url":"https://api.github.com/users/maplesond/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maplesond/subscriptions","organizations_url":"https://api.github.com/users/maplesond/orgs","repos_url":"https://api.github.com/users/maplesond/repos","events_url":"https://api.github.com/users/maplesond/events{/privacy}","received_events_url":"https://api.github.com/users/maplesond/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/Bioinformatics","name":"Bioinformatics","color":"207de5"},{"url":"https://api.github.com/repos/Homebrew/homebrew-science/labels/New%20version","name":"New 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regards to the command line error on my system, maybe this is just a linuxbrew thing?  Or maybe there is something misconfigured on my system.  If it works well in your build environments and on macs then I'm happy.  When I manually build and install on my system, or on a travis build environment I don't run into this issue.\r\n\r\nWith regards to boost availability I'm not sure exactly what the issue is here.  Again, this is something that  For my own travis builds, and installing with linuxbrew, I don't have any problem linking with boost (although I do have the command line issue discussed previously).  I have configured KAT to statically link against boost to reduce runtime dependencies but it looks like this shouldn't be a problem as you clearly have the *.a boost libs on your system.   \r\n\r\nWhat you should be seeing is something like this (taken from my travis build):\r\n\r\n~~~~\r\nchecking for sphinx-build... no\r\nconfigure: WARNING: Sphinx not detected, wont create documentation.  You can still find the documentation online at: https://kat.readthedocs.org/en/latest/\r\nchecking for boostlib >= 1.52... yes\r\nchecking whether the Boost::Filesystem library is available... yes\r\nchecking for exit in -lboost_filesystem... yes\r\nchecking for /usr/local/lib/libboost_filesystem.a... yes\r\nchecking whether the Boost::System library is available... yes\r\nchecking for exit in -lboost_system... yes\r\nchecking for /usr/local/lib/libboost_system.a... yes\r\nchecking whether the Boost::Program_Options library is available... yes\r\nchecking for exit in -lboost_program_options... yes\r\nchecking for /usr/local/lib/libboost_program_options.a... yes\r\nchecking whether the Boost::Chrono library is available... yes\r\nchecking for exit in -lboost_chrono... yes\r\nchecking for /usr/local/lib/libboost_chrono.a... yes\r\nchecking whether the Boost::Timer library is available... yes\r\nchecking for exit in -lboost_timer... yes\r\nchecking for /usr/local/lib/libboost_timer.a... yes\r\nconfigure: creating ./config.status\r\n~~~~\r\n\r\nSo there should be no warning of missing dynamic libraries, because you have those.  Is the boost library directory `/gsc/btl/linuxbrew/Cellar/boost/1.60.0_2/lib/` mentioned in LDFLAGS? (Along with the boost include directory on CPPFLAGS?) If not KAT won't be able to find it.  The alternative approach is to use the `--with-boost` option in the KAT configure script.  Using this you can point directly to  `/gsc/btl/linuxbrew/Cellar/boost/1.60.0_2/lib/`.  Hope this helps.\r\n"}}
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