{"action":"created","issue":{"url":"https://api.github.com/repos/knime-ip/knip/issues/397","repository_url":"https://api.github.com/repos/knime-ip/knip","labels_url":"https://api.github.com/repos/knime-ip/knip/issues/397/labels{/name}","comments_url":"https://api.github.com/repos/knime-ip/knip/issues/397/comments","events_url":"https://api.github.com/repos/knime-ip/knip/issues/397/events","html_url":"https://github.com/knime-ip/knip/issues/397","id":176844146,"number":397,"title":"Img Writer: ICS metadata errors + missing dimensions","user":{"login":"maierl","id":8655419,"avatar_url":"https://avatars.githubusercontent.com/u/8655419?v=3","gravatar_id":"","url":"https://api.github.com/users/maierl","html_url":"https://github.com/maierl","followers_url":"https://api.github.com/users/maierl/followers","following_url":"https://api.github.com/users/maierl/following{/other_user}","gists_url":"https://api.github.com/users/maierl/gists{/gist_id}","starred_url":"https://api.github.com/users/maierl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maierl/subscriptions","organizations_url":"https://api.github.com/users/maierl/orgs","repos_url":"https://api.github.com/users/maierl/repos","events_url":"https://api.github.com/users/maierl/events{/privacy}","received_events_url":"https://api.github.com/users/maierl/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"beschu","id":13538781,"avatar_url":"https://avatars.githubusercontent.com/u/13538781?v=3","gravatar_id":"","url":"https://api.github.com/users/beschu","html_url":"https://github.com/beschu","followers_url":"https://api.github.com/users/beschu/followers","following_url":"https://api.github.com/users/beschu/following{/other_user}","gists_url":"https://api.github.com/users/beschu/gists{/gist_id}","starred_url":"https://api.github.com/users/beschu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/beschu/subscriptions","organizations_url":"https://api.github.com/users/beschu/orgs","repos_url":"https://api.github.com/users/beschu/repos","events_url":"https://api.github.com/users/beschu/events{/privacy}","received_events_url":"https://api.github.com/users/beschu/received_events","type":"User","site_admin":false},"assignees":[{"login":"beschu","id":13538781,"avatar_url":"https://avatars.githubusercontent.com/u/13538781?v=3","gravatar_id":"","url":"https://api.github.com/users/beschu","html_url":"https://github.com/beschu","followers_url":"https://api.github.com/users/beschu/followers","following_url":"https://api.github.com/users/beschu/following{/other_user}","gists_url":"https://api.github.com/users/beschu/gists{/gist_id}","starred_url":"https://api.github.com/users/beschu/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/beschu/subscriptions","organizations_url":"https://api.github.com/users/beschu/orgs","repos_url":"https://api.github.com/users/beschu/repos","events_url":"https://api.github.com/users/beschu/events{/privacy}","received_events_url":"https://api.github.com/users/beschu/received_events","type":"User","site_admin":false}],"milestone":null,"comments":12,"created_at":"2016-09-14T08:20:41Z","updated_at":"2016-09-20T12:17:06Z","closed_at":null,"body":"The ICS metadata has various errors. I am aware that it is currently not possible to write more than one channel (https://github.com/scifio/scifio/issues/326), but there are a few more things to be corrected.\r\n\r\n- the third dimension is Z for my images, but stored as `u`\r\n- the scaling unit of the third dimension is um, but stored as `null`\r\n- the scaling values are wrong. imagej expects a height / width / length of each pixel in units, but the values stored are something like number of pixels\r\n- IMHO the .ics filename should be a relative path instead.\r\n\r\ncurrent output:\r\n```\r\n\t\r\nics_version\t1.0\r\nfilename\t/path/img.ics\r\nlayout\tparameters\t6\r\nlayout\torder\tbits\tx\ty\tu\t\r\nlayout\tsizes\t16\t512\t512\t31\t0\t0\t\r\nrepresentation\tformat\tinteger\r\nrepresentation\tsign\tunsigned\r\nrepresentation\tcompression\tuncompressed\r\nrepresentation\tbyte_order\t2\t1\t\r\nparameter\tscale\t1.000000\t512\t512\t1.0\t\r\nparameter\tunits\tbits\tum\tum\tnull\t\r\n\r\nend\r\n```\r\n\r\nmore correct:\r\n```\r\n\t\r\nics_version\t1.0\r\nfilename\t/path?!/img.ics\r\nlayout\tparameters\t6\r\nlayout\torder\tbits\tx\ty\tz\t\r\nlayout\tsizes\t16\t512\t512\t31\t0\t0\t\r\nrepresentation\tformat\tinteger\r\nrepresentation\tsign\tunsigned\r\nrepresentation\tcompression\tuncompressed\r\nrepresentation\tbyte_order\t2\t1\t\r\nparameter\tscale\t1.000000\t\t0.2000000\t0.20000000\t2.00000000\r\nparameter\tunits\tbits\tum\tum\tum\r\n\r\nend\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/knime-ip/knip/issues/comments/248284259","html_url":"https://github.com/knime-ip/knip/issues/397#issuecomment-248284259","issue_url":"https://api.github.com/repos/knime-ip/knip/issues/397","id":248284259,"user":{"login":"maierl","id":8655419,"avatar_url":"https://avatars.githubusercontent.com/u/8655419?v=3","gravatar_id":"","url":"https://api.github.com/users/maierl","html_url":"https://github.com/maierl","followers_url":"https://api.github.com/users/maierl/followers","following_url":"https://api.github.com/users/maierl/following{/other_user}","gists_url":"https://api.github.com/users/maierl/gists{/gist_id}","starred_url":"https://api.github.com/users/maierl/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/maierl/subscriptions","organizations_url":"https://api.github.com/users/maierl/orgs","repos_url":"https://api.github.com/users/maierl/repos","events_url":"https://api.github.com/users/maierl/events{/privacy}","received_events_url":"https://api.github.com/users/maierl/received_events","type":"User","site_admin":false},"created_at":"2016-09-20T12:17:06Z","updated_at":"2016-09-20T12:17:06Z","body":"the updated bioformats plugin works fine. yet that doensn't immediately help reading / writing files in knime I assume?"}}
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