{"action":"created","issue":{"url":"https://api.github.com/repos/adomingues/NGSpipe2go/issues/1","repository_url":"https://api.github.com/repos/adomingues/NGSpipe2go","labels_url":"https://api.github.com/repos/adomingues/NGSpipe2go/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/adomingues/NGSpipe2go/issues/1/comments","events_url":"https://api.github.com/repos/adomingues/NGSpipe2go/issues/1/events","html_url":"https://github.com/adomingues/NGSpipe2go/pull/1","id":157875560,"number":1,"title":"Update from original NGSpipe2Go","user":{"login":"adomingues","id":2607577,"avatar_url":"https://avatars.githubusercontent.com/u/2607577?v=3","gravatar_id":"","url":"https://api.github.com/users/adomingues","html_url":"https://github.com/adomingues","followers_url":"https://api.github.com/users/adomingues/followers","following_url":"https://api.github.com/users/adomingues/following{/other_user}","gists_url":"https://api.github.com/users/adomingues/gists{/gist_id}","starred_url":"https://api.github.com/users/adomingues/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adomingues/subscriptions","organizations_url":"https://api.github.com/users/adomingues/orgs","repos_url":"https://api.github.com/users/adomingues/repos","events_url":"https://api.github.com/users/adomingues/events{/privacy}","received_events_url":"https://api.github.com/users/adomingues/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-06-01T10:38:24Z","updated_at":"2016-06-01T10:45:57Z","closed_at":"2016-06-01T10:38:47Z","pull_request":{"url":"https://api.github.com/repos/adomingues/NGSpipe2go/pulls/1","html_url":"https://github.com/adomingues/NGSpipe2go/pull/1","diff_url":"https://github.com/adomingues/NGSpipe2go/pull/1.diff","patch_url":"https://github.com/adomingues/NGSpipe2go/pull/1.patch"},"body":"The goal is to update my branch with the CF branch. I expect that some files (ignored in my branch) will be added from NGSpipe."},"comment":{"url":"https://api.github.com/repos/adomingues/NGSpipe2go/issues/comments/222957398","html_url":"https://github.com/adomingues/NGSpipe2go/pull/1#issuecomment-222957398","issue_url":"https://api.github.com/repos/adomingues/NGSpipe2go/issues/1","id":222957398,"user":{"login":"adomingues","id":2607577,"avatar_url":"https://avatars.githubusercontent.com/u/2607577?v=3","gravatar_id":"","url":"https://api.github.com/users/adomingues","html_url":"https://github.com/adomingues","followers_url":"https://api.github.com/users/adomingues/followers","following_url":"https://api.github.com/users/adomingues/following{/other_user}","gists_url":"https://api.github.com/users/adomingues/gists{/gist_id}","starred_url":"https://api.github.com/users/adomingues/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/adomingues/subscriptions","organizations_url":"https://api.github.com/users/adomingues/orgs","repos_url":"https://api.github.com/users/adomingues/repos","events_url":"https://api.github.com/users/adomingues/events{/privacy}","received_events_url":"https://api.github.com/users/adomingues/received_events","type":"User","site_admin":false},"created_at":"2016-06-01T10:45:57Z","updated_at":"2016-06-01T10:45:57Z","body":"update of my branch was done in github following these [instructions](http://stackoverflow.com/a/23853061/1274242). There are some minor interface differences (old answer), but it is very straightforward. \r\n\r\nAs expected there was an error due to ignored files in my branch. [Solution](http://stackoverflow.com/a/26639255/1274242):\r\n\r\n```bash\r\ngit add modules/NGS/fastqc.module.groovy modules/RNAseq/star.module.groovy modules/RNAseq/tool.locations.groovy pipelines/ChIPseq/bpipe.config pipelines/DNAseq/bpipe.config\r\ngit stash\r\ngit pull\r\n```\r\n\r\nOf course I keep a local copy of these files :)"}}
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