{"action":"created","issue":{"url":"https://api.github.com/repos/GATB/bcalm/issues/17","repository_url":"https://api.github.com/repos/GATB/bcalm","labels_url":"https://api.github.com/repos/GATB/bcalm/issues/17/labels{/name}","comments_url":"https://api.github.com/repos/GATB/bcalm/issues/17/comments","events_url":"https://api.github.com/repos/GATB/bcalm/issues/17/events","html_url":"https://github.com/GATB/bcalm/issues/17","id":190096092,"number":17,"title":"Very large k problem","user":{"login":"Malfoy","id":5199358,"avatar_url":"https://avatars.githubusercontent.com/u/5199358?v=3","gravatar_id":"","url":"https://api.github.com/users/Malfoy","html_url":"https://github.com/Malfoy","followers_url":"https://api.github.com/users/Malfoy/followers","following_url":"https://api.github.com/users/Malfoy/following{/other_user}","gists_url":"https://api.github.com/users/Malfoy/gists{/gist_id}","starred_url":"https://api.github.com/users/Malfoy/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Malfoy/subscriptions","organizations_url":"https://api.github.com/users/Malfoy/orgs","repos_url":"https://api.github.com/users/Malfoy/repos","events_url":"https://api.github.com/users/Malfoy/events{/privacy}","received_events_url":"https://api.github.com/users/Malfoy/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-11-17T16:30:48Z","updated_at":"2016-11-18T15:52:06Z","closed_at":null,"body":"When using very large k value like 1000 or 10,000.\r\nA segfault occur during the DSK pass\r\n...\r\n[DSK: Pass 1/1, Step 1: partitioning     ]  49.5 %   elapsed:   3 min 53 sec   remaining:   3 min 57 sec   cpu: 100.7 %   mem: [DSK: Pass 1/1, Step 1: partitioning     ]  49.5 %   elapsed:   3 min 53 sec   remaining:   3 min 57 sec   cpu: 100.7 %   mem: [DSK: Pass 1/1, Step 1: partitioning     ]  49.5 %   elapsed:   3 min 53 sec   remaining:   3 min 57 sec   cpu: 100.7 %   mem: [DSK: Pass 1/1, Step 2: counting kmers   ]  49.5 %   elapsed:   3 min 57 sec   remaining:   4 min 2  sec   cpu: 100.7 %   mem: [58640, 66692, 66726] MB zsh: segmentation fault  bcalm -in contigs1.fa -kmer-size 1000 -abundance-min 1\r\n"},"comment":{"url":"https://api.github.com/repos/GATB/bcalm/issues/comments/261565439","html_url":"https://github.com/GATB/bcalm/issues/17#issuecomment-261565439","issue_url":"https://api.github.com/repos/GATB/bcalm/issues/17","id":261565439,"user":{"login":"rchikhi","id":1218301,"avatar_url":"https://avatars.githubusercontent.com/u/1218301?v=3","gravatar_id":"","url":"https://api.github.com/users/rchikhi","html_url":"https://github.com/rchikhi","followers_url":"https://api.github.com/users/rchikhi/followers","following_url":"https://api.github.com/users/rchikhi/following{/other_user}","gists_url":"https://api.github.com/users/rchikhi/gists{/gist_id}","starred_url":"https://api.github.com/users/rchikhi/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/rchikhi/subscriptions","organizations_url":"https://api.github.com/users/rchikhi/orgs","repos_url":"https://api.github.com/users/rchikhi/repos","events_url":"https://api.github.com/users/rchikhi/events{/privacy}","received_events_url":"https://api.github.com/users/rchikhi/received_events","type":"User","site_admin":false},"created_at":"2016-11-18T15:52:06Z","updated_at":"2016-11-18T15:52:06Z","body":"DSK problem, huh? paging @grizk"}}
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