{"action":"created","issue":{"url":"https://api.github.com/repos/BlueBrain/NeuroM/issues/438","repository_url":"https://api.github.com/repos/BlueBrain/NeuroM","labels_url":"https://api.github.com/repos/BlueBrain/NeuroM/issues/438/labels{/name}","comments_url":"https://api.github.com/repos/BlueBrain/NeuroM/issues/438/comments","events_url":"https://api.github.com/repos/BlueBrain/NeuroM/issues/438/events","html_url":"https://github.com/BlueBrain/NeuroM/issues/438","id":165552629,"number":438,"title":"section_path_distances gives an error for the hippocampus cell","user":{"login":"chalimou","id":16538003,"avatar_url":"https://avatars.githubusercontent.com/u/16538003?v=3","gravatar_id":"","url":"https://api.github.com/users/chalimou","html_url":"https://github.com/chalimou","followers_url":"https://api.github.com/users/chalimou/followers","following_url":"https://api.github.com/users/chalimou/following{/other_user}","gists_url":"https://api.github.com/users/chalimou/gists{/gist_id}","starred_url":"https://api.github.com/users/chalimou/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chalimou/subscriptions","organizations_url":"https://api.github.com/users/chalimou/orgs","repos_url":"https://api.github.com/users/chalimou/repos","events_url":"https://api.github.com/users/chalimou/events{/privacy}","received_events_url":"https://api.github.com/users/chalimou/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":{"login":"juanchopanza","id":675013,"avatar_url":"https://avatars.githubusercontent.com/u/675013?v=3","gravatar_id":"","url":"https://api.github.com/users/juanchopanza","html_url":"https://github.com/juanchopanza","followers_url":"https://api.github.com/users/juanchopanza/followers","following_url":"https://api.github.com/users/juanchopanza/following{/other_user}","gists_url":"https://api.github.com/users/juanchopanza/gists{/gist_id}","starred_url":"https://api.github.com/users/juanchopanza/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/juanchopanza/subscriptions","organizations_url":"https://api.github.com/users/juanchopanza/orgs","repos_url":"https://api.github.com/users/juanchopanza/repos","events_url":"https://api.github.com/users/juanchopanza/events{/privacy}","received_events_url":"https://api.github.com/users/juanchopanza/received_events","type":"User","site_admin":false},"assignees":[{"login":"juanchopanza","id":675013,"avatar_url":"https://avatars.githubusercontent.com/u/675013?v=3","gravatar_id":"","url":"https://api.github.com/users/juanchopanza","html_url":"https://github.com/juanchopanza","followers_url":"https://api.github.com/users/juanchopanza/followers","following_url":"https://api.github.com/users/juanchopanza/following{/other_user}","gists_url":"https://api.github.com/users/juanchopanza/gists{/gist_id}","starred_url":"https://api.github.com/users/juanchopanza/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/juanchopanza/subscriptions","organizations_url":"https://api.github.com/users/juanchopanza/orgs","repos_url":"https://api.github.com/users/juanchopanza/repos","events_url":"https://api.github.com/users/juanchopanza/events{/privacy}","received_events_url":"https://api.github.com/users/juanchopanza/received_events","type":"User","site_admin":false}],"milestone":null,"comments":5,"created_at":"2016-07-14T12:42:05Z","updated_at":"2016-07-14T14:24:27Z","closed_at":null,"body":"The extraction of the feature section_path_distances for the hippocampus cell (included below) crashes with an error when computed with the following script: (this was not the case with ezy)\r\n\r\n```\r\nfrom neurom import fst\r\nfrom neurom import get\r\nfrom neurom.core.types import NeuriteType\r\n\r\nif __name__ == '__main__':\r\n    ref_population = fst.load_neurons('./hippo')\r\n    ref_data = get( 'section_path_distances', ref_population, neurite_type=NeuriteType.axon)\r\n```\r\n[hippo.zip](https://github.com/BlueBrain/NeuroM/files/363706/hippo.zip)\r\n\r\n "},"comment":{"url":"https://api.github.com/repos/BlueBrain/NeuroM/issues/comments/232680602","html_url":"https://github.com/BlueBrain/NeuroM/issues/438#issuecomment-232680602","issue_url":"https://api.github.com/repos/BlueBrain/NeuroM/issues/438","id":232680602,"user":{"login":"chalimou","id":16538003,"avatar_url":"https://avatars.githubusercontent.com/u/16538003?v=3","gravatar_id":"","url":"https://api.github.com/users/chalimou","html_url":"https://github.com/chalimou","followers_url":"https://api.github.com/users/chalimou/followers","following_url":"https://api.github.com/users/chalimou/following{/other_user}","gists_url":"https://api.github.com/users/chalimou/gists{/gist_id}","starred_url":"https://api.github.com/users/chalimou/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/chalimou/subscriptions","organizations_url":"https://api.github.com/users/chalimou/orgs","repos_url":"https://api.github.com/users/chalimou/repos","events_url":"https://api.github.com/users/chalimou/events{/privacy}","received_events_url":"https://api.github.com/users/chalimou/received_events","type":"User","site_admin":false},"created_at":"2016-07-14T14:24:27Z","updated_at":"2016-07-14T14:24:27Z","body":"Thanks very much for the analysis Juan. I’ll check with Armando tomorrow and if we cannot find a solution, we’ll wait until Lida is back from vacation in three weeks time.\nnancy\n\n> On 14 Jul 2016, at 16:07, Juan Palacios <notifications@github.com> wrote:\n> \n> @chalimou <https://github.com/chalimou> Maybe you can consult with whoever created this file, but changing the type of points 597 and 598 to apical dendrite might be a solution.\n> \n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub <https://github.com/BlueBrain/NeuroM/issues/438#issuecomment-232675761>, or mute the thread <https://github.com/notifications/unsubscribe/APxZkwFueDUZFACRsTha7i4AYMnN9dfyks5qVkKlgaJpZM4JMZKC>.\n> \n\n"}}
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