{"action":"created","issue":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/686","repository_url":"https://api.github.com/repos/galaxyproject/tools-iuc","labels_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/686/labels{/name}","comments_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/686/comments","events_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/686/events","html_url":"https://github.com/galaxyproject/tools-iuc/pull/686","id":141867814,"number":686,"title":"Add tag_pileup_frequency tool","user":{"login":"gregvonkuster","id":6947053,"avatar_url":"https://avatars.githubusercontent.com/u/6947053?v=3","gravatar_id":"","url":"https://api.github.com/users/gregvonkuster","html_url":"https://github.com/gregvonkuster","followers_url":"https://api.github.com/users/gregvonkuster/followers","following_url":"https://api.github.com/users/gregvonkuster/following{/other_user}","gists_url":"https://api.github.com/users/gregvonkuster/gists{/gist_id}","starred_url":"https://api.github.com/users/gregvonkuster/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gregvonkuster/subscriptions","organizations_url":"https://api.github.com/users/gregvonkuster/orgs","repos_url":"https://api.github.com/users/gregvonkuster/repos","events_url":"https://api.github.com/users/gregvonkuster/events{/privacy}","received_events_url":"https://api.github.com/users/gregvonkuster/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":1,"created_at":"2016-03-18T13:36:30Z","updated_at":"2016-03-18T13:50:28Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/pulls/686","html_url":"https://github.com/galaxyproject/tools-iuc/pull/686","diff_url":"https://github.com/galaxyproject/tools-iuc/pull/686.diff","patch_url":"https://github.com/galaxyproject/tools-iuc/pull/686.patch"},"body":"I've taken the liberty of including Java source code in a \"src\" directory within this tool.  I'm hoping this can be an approach we can adopt for non-pythonic tools.  If so, I will upload Java source to other tools I've submitted in the past.  This approach will enable easier maintenance of the tools since the source is available along with the compiled jar.  Please provide feedback on this and I'll make any necessary changes.  Thanks everyone!"},"comment":{"url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/comments/198369567","html_url":"https://github.com/galaxyproject/tools-iuc/pull/686#issuecomment-198369567","issue_url":"https://api.github.com/repos/galaxyproject/tools-iuc/issues/686","id":198369567,"user":{"login":"bgruening","id":469983,"avatar_url":"https://avatars.githubusercontent.com/u/469983?v=3","gravatar_id":"","url":"https://api.github.com/users/bgruening","html_url":"https://github.com/bgruening","followers_url":"https://api.github.com/users/bgruening/followers","following_url":"https://api.github.com/users/bgruening/following{/other_user}","gists_url":"https://api.github.com/users/bgruening/gists{/gist_id}","starred_url":"https://api.github.com/users/bgruening/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bgruening/subscriptions","organizations_url":"https://api.github.com/users/bgruening/orgs","repos_url":"https://api.github.com/users/bgruening/repos","events_url":"https://api.github.com/users/bgruening/events{/privacy}","received_events_url":"https://api.github.com/users/bgruening/received_events","type":"User","site_admin":false},"created_at":"2016-03-18T13:50:28Z","updated_at":"2016-03-18T13:50:28Z","body":"@gregvonkuster is this code just for this tool or is this an upstream tool?\r\nI'm only concerned about the size of the TS repo and this github repo at some point. And conda packages are easy to create. So this will get very easy as a dependency."}}