{"action":"created","issue":{"url":"https://api.github.com/repos/cBioPortal/cbioportal/issues/1235","repository_url":"https://api.github.com/repos/cBioPortal/cbioportal","labels_url":"https://api.github.com/repos/cBioPortal/cbioportal/issues/1235/labels{/name}","comments_url":"https://api.github.com/repos/cBioPortal/cbioportal/issues/1235/comments","events_url":"https://api.github.com/repos/cBioPortal/cbioportal/issues/1235/events","html_url":"https://github.com/cBioPortal/cbioportal/pull/1235","id":154750523,"number":1235,"title":"Fix patient mixed data; fix for MySQLbulkLoader to fix related unit test","user":{"login":"pieterlukasse","id":2900303,"avatar_url":"https://avatars.githubusercontent.com/u/2900303?v=3","gravatar_id":"","url":"https://api.github.com/users/pieterlukasse","html_url":"https://github.com/pieterlukasse","followers_url":"https://api.github.com/users/pieterlukasse/followers","following_url":"https://api.github.com/users/pieterlukasse/following{/other_user}","gists_url":"https://api.github.com/users/pieterlukasse/gists{/gist_id}","starred_url":"https://api.github.com/users/pieterlukasse/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/pieterlukasse/subscriptions","organizations_url":"https://api.github.com/users/pieterlukasse/orgs","repos_url":"https://api.github.com/users/pieterlukasse/repos","events_url":"https://api.github.com/users/pieterlukasse/events{/privacy}","received_events_url":"https://api.github.com/users/pieterlukasse/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/cBioPortal/cbioportal/labels/in%20progress","name":"in progress","color":"ededed"},{"url":"https://api.github.com/repos/cBioPortal/cbioportal/labels/ready%20to%20review","name":"ready to review","color":"00bb00"}],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-05-13T16:23:06Z","updated_at":"2016-05-13T17:53:06Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/cBioPortal/cbioportal/pulls/1235","html_url":"https://github.com/cBioPortal/cbioportal/pull/1235","diff_url":"https://github.com/cBioPortal/cbioportal/pull/1235.diff","patch_url":"https://github.com/cBioPortal/cbioportal/pull/1235.patch"},"body":"Fix to make the code more tolerant for a previously existing sample (instead of giving an error) for MIXED data type. \r\n\r\nA MySQLbulkLoader fix (discussed in #844) was also necessary to fix the related unit tests in `TestImportClinicalData` \r\n"},"comment":{"url":"https://api.github.com/repos/cBioPortal/cbioportal/issues/comments/219113940","html_url":"https://github.com/cBioPortal/cbioportal/pull/1235#issuecomment-219113940","issue_url":"https://api.github.com/repos/cBioPortal/cbioportal/issues/1235","id":219113940,"user":{"login":"zheins","id":10240498,"avatar_url":"https://avatars.githubusercontent.com/u/10240498?v=3","gravatar_id":"","url":"https://api.github.com/users/zheins","html_url":"https://github.com/zheins","followers_url":"https://api.github.com/users/zheins/followers","following_url":"https://api.github.com/users/zheins/following{/other_user}","gists_url":"https://api.github.com/users/zheins/gists{/gist_id}","starred_url":"https://api.github.com/users/zheins/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/zheins/subscriptions","organizations_url":"https://api.github.com/users/zheins/orgs","repos_url":"https://api.github.com/users/zheins/repos","events_url":"https://api.github.com/users/zheins/events{/privacy}","received_events_url":"https://api.github.com/users/zheins/received_events","type":"User","site_admin":false},"created_at":"2016-05-13T17:53:06Z","updated_at":"2016-05-13T17:53:06Z","body":"@pieterlukasse - this fixes one of the issues we talked about. I still get this error:\r\n\r\nABORTED! Error:  No data was added.  Please check your file format and try again.\r\n\r\nThe import code incorrectly counts data added by counting the number of samples added to the database. If no samples are added, it assumes no data was added."}}