{"action":"opened","issue":{"url":"https://api.github.com/repos/sorgerlab/bioentities/issues/19","repository_url":"https://api.github.com/repos/sorgerlab/bioentities","labels_url":"https://api.github.com/repos/sorgerlab/bioentities/issues/19/labels{/name}","comments_url":"https://api.github.com/repos/sorgerlab/bioentities/issues/19/comments","events_url":"https://api.github.com/repos/sorgerlab/bioentities/issues/19/events","html_url":"https://github.com/sorgerlab/bioentities/issues/19","id":189882169,"number":19,"title":"Advice on Override and BE entry clashes","user":{"login":"hickst","id":22797,"avatar_url":"https://avatars.githubusercontent.com/u/22797?v=3","gravatar_id":"","url":"https://api.github.com/users/hickst","html_url":"https://github.com/hickst","followers_url":"https://api.github.com/users/hickst/followers","following_url":"https://api.github.com/users/hickst/following{/other_user}","gists_url":"https://api.github.com/users/hickst/gists{/gist_id}","starred_url":"https://api.github.com/users/hickst/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hickst/subscriptions","organizations_url":"https://api.github.com/users/hickst/orgs","repos_url":"https://api.github.com/users/hickst/repos","events_url":"https://api.github.com/users/hickst/events{/privacy}","received_events_url":"https://api.github.com/users/hickst/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-11-16T23:24:48Z","updated_at":"2016-11-16T23:24:48Z","closed_at":null,"body":"Hi Guys,\r\n\r\nThis is not really an issue but...\r\nI've created two KBs for Reach from the Bioentities files: a protein complexes KB and a protein families KB. I'm currently in the process of updating our Override KB, which has the highest priority. My first step is to remove any entries which can now be found in the two new BE KBs, as the existing override entries will \"block\" resolution to the BE KB entries.\r\n\r\nBut, I'm somewhat reluctant to remove Override family entries which _already_ map to PFAM IDs, **unless** you (in your superior Biological wisdom) think they are incorrectly mapped, so I'd greatly appreciate your advice on the \"clashing\" entries below:\r\n\r\nACOX\tPF01756\thttp://pfam.xfam.org/family/ACOX\r\nBMP\tPF02608\thttp://pfam.xfam.org/family/BMP\r\nCadherin\tPF00028\thttp://pfam.xfam.org/family/Cadherin\r\nCOX4\tPF02936\thttp://pfam.xfam.org/family/COX4\r\nCOX6A\tPF02046\thttp://pfam.xfam.org/family/COX6a\r\nCOX6B\tPF02297\thttp://pfam.xfam.org/family/COX6b\r\nCOX7A\tPF02238\thttp://pfam.xfam.org/family/COX7a\r\nCOX7B\tPF05392\thttp://pfam.xfam.org/family/COX7b\r\nCOX8\tPF02285\thttp://pfam.xfam.org/family/COX8\r\nCRISP\tPF08562\thttp://pfam.xfam.org/family/CRISP\r\nDDR\tPF08841\thttp://pfam.xfam.org/family/DDR\r\nDVL\tPF08137\thttp://pfam.xfam.org/family/DVL\r\nETS\tPF00178\thttp://pfam.xfam.org/family/ETS\r\nFGF\tPF00167\thttp://pfam.xfam.org/family/FGF\r\nFLOT\tPF15975\thttp://pfam.xfam.org/family/FLOT\r\nGATA\tPF00320\thttp://pfam.xfam.org/family/GATA\r\nHSP90\tPF00183\thttp://pfam.xfam.org/family/HSP90\r\nIGFBP\tPF00219\thttp://pfam.xfam.org/family/IGFBP\r\nIL1\tPF00340\thttp://pfam.xfam.org/family/IL1\r\nIRS\tPF02174\thttp://pfam.xfam.org/family/IRS\r\nMAF\tPF02545\thttp://pfam.xfam.org/family/MAF\r\nNOTCH\tPF00066\thttp://pfam.xfam.org/family/NOTCH\r\nPKI\tPF02827\thttp://pfam.xfam.org/family/PKI\r\nRAS\tPF00071\thttp://pfam.xfam.org/family/RAS\r\nSAA\tPF00277\thttp://pfam.xfam.org/family/SAA\r\nTGFB\tIPR015615\thttp://www.ebi.ac.uk/interpro/entry/IPR015615\r\n"}}
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