{"action":"created","issue":{"url":"https://api.github.com/repos/RGLab/flowCore/issues/47","repository_url":"https://api.github.com/repos/RGLab/flowCore","labels_url":"https://api.github.com/repos/RGLab/flowCore/issues/47/labels{/name}","comments_url":"https://api.github.com/repos/RGLab/flowCore/issues/47/comments","events_url":"https://api.github.com/repos/RGLab/flowCore/issues/47/events","html_url":"https://github.com/RGLab/flowCore/issues/47","id":119795927,"number":47,"title":"Don't know how to deal with $BYTEORD 3,4,1,2","user":{"login":"jspidlen","id":431322,"avatar_url":"https://avatars.githubusercontent.com/u/431322?v=3","gravatar_id":"","url":"https://api.github.com/users/jspidlen","html_url":"https://github.com/jspidlen","followers_url":"https://api.github.com/users/jspidlen/followers","following_url":"https://api.github.com/users/jspidlen/following{/other_user}","gists_url":"https://api.github.com/users/jspidlen/gists{/gist_id}","starred_url":"https://api.github.com/users/jspidlen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jspidlen/subscriptions","organizations_url":"https://api.github.com/users/jspidlen/orgs","repos_url":"https://api.github.com/users/jspidlen/repos","events_url":"https://api.github.com/users/jspidlen/events{/privacy}","received_events_url":"https://api.github.com/users/jspidlen/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2015-12-01T20:02:52Z","updated_at":"2016-06-01T17:01:38Z","closed_at":"2016-06-01T17:01:38Z","body":"Hi guys,\r\nthis issue came up as I was processing ~30,000 FCS files in ~300 FlowRepository datasets:\r\nError in readFCSdata(con, offsets, txt, transformation, which.lines, scale, : Don't know how to deal with $BYTEORD 3,4,1,2. \r\nAny of the 60 files in dataset FR-FCM-ZZY9 (http://flowrepository.org/id/FR-FCM-ZZY9) give this error. All these files can be downloaded from \r\nhttp://flowrepository.org/experiments/41/download_ziped_files or, if you just want a single file to test on, you can grab this one: http://flowrepository.org/experiments/41/fcs_files/1873/download\r\n\r\nThis is essentially a mixed endian encoding. I am not sure how prevalent these types of files are, but I was thinking that it may be possible to support this since you have the splitInt option where you combine 2 16bit uint anyway... \r\n\r\nThanks,\r\nJosef\r\n\r\n--\r\nJosef Spidlen, Ph.D. \r\nStaff Scientist, Terry Fox Laboratory, BC Cancer Agency \r\n675 West 10th Avenue, Vancouver, BC, V5Z1L3, Canada \r\nTel. +1 604-675-8000, ex. 7755\r\n"},"comment":{"url":"https://api.github.com/repos/RGLab/flowCore/issues/comments/223058216","html_url":"https://github.com/RGLab/flowCore/issues/47#issuecomment-223058216","issue_url":"https://api.github.com/repos/RGLab/flowCore/issues/47","id":223058216,"user":{"login":"jspidlen","id":431322,"avatar_url":"https://avatars.githubusercontent.com/u/431322?v=3","gravatar_id":"","url":"https://api.github.com/users/jspidlen","html_url":"https://github.com/jspidlen","followers_url":"https://api.github.com/users/jspidlen/followers","following_url":"https://api.github.com/users/jspidlen/following{/other_user}","gists_url":"https://api.github.com/users/jspidlen/gists{/gist_id}","starred_url":"https://api.github.com/users/jspidlen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/jspidlen/subscriptions","organizations_url":"https://api.github.com/users/jspidlen/orgs","repos_url":"https://api.github.com/users/jspidlen/repos","events_url":"https://api.github.com/users/jspidlen/events{/privacy}","received_events_url":"https://api.github.com/users/jspidlen/received_events","type":"User","site_admin":false},"created_at":"2016-06-01T17:01:38Z","updated_at":"2016-06-01T17:01:38Z","body":"Thanks Mike,\r\nthe data looks fine to me."}}
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