{"action":"created","issue":{"url":"https://api.github.com/repos/idaholab/moose/issues/7506","repository_url":"https://api.github.com/repos/idaholab/moose","labels_url":"https://api.github.com/repos/idaholab/moose/issues/7506/labels{/name}","comments_url":"https://api.github.com/repos/idaholab/moose/issues/7506/comments","events_url":"https://api.github.com/repos/idaholab/moose/issues/7506/events","html_url":"https://github.com/idaholab/moose/issues/7506","id":169674959,"number":7506,"title":"update update_and_rebuild_libmesh.sh to include new HDF5 method name","user":{"login":"mangerij","id":7597716,"avatar_url":"https://avatars.githubusercontent.com/u/7597716?v=3","gravatar_id":"","url":"https://api.github.com/users/mangerij","html_url":"https://github.com/mangerij","followers_url":"https://api.github.com/users/mangerij/followers","following_url":"https://api.github.com/users/mangerij/following{/other_user}","gists_url":"https://api.github.com/users/mangerij/gists{/gist_id}","starred_url":"https://api.github.com/users/mangerij/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mangerij/subscriptions","organizations_url":"https://api.github.com/users/mangerij/orgs","repos_url":"https://api.github.com/users/mangerij/repos","events_url":"https://api.github.com/users/mangerij/events{/privacy}","received_events_url":"https://api.github.com/users/mangerij/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":4,"created_at":"2016-08-05T19:03:57Z","updated_at":"2016-08-11T17:10:02Z","closed_at":null,"body":"### Description of the enhancement or error report\r\n\r\nThis is a bit of a second-hand bug report but I figure I should let someone know.\r\n\r\nApparently, according to our HPC, somewhere in the version history of HDF5 a method name was changed. The newest NetCDF releases accounted for this change, but the MOOSE framework distributes an older version which requres\r\n\r\n`sed -i -e 's/H5Pset_fapl_mpiposix/H5Pset_fapl_mpio/g' contrib/netcdf/4.3.1/libsrc4/nc4file.c `\r\n\r\nafter line 72 in the `update_and_rebuild_libmesh.sh` script to compile. Related:\r\n\r\nhttp://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2014/msg00188.html\r\n\r\n### Rationale for the enhancement or information for reproducing the error\r\n\r\nWe're compiling with `hdf5/1.8.17-gcc-mpi` and if you don't include this, the libMesh compile fails.\r\n\r\n### Identified impact\r\n(i.e. Internal object changes, limited interface changes, public API change, or a list of specific applications impacted)\r\n\r\nReduce need to hack the build libMesh script for newer netCDF"},"comment":{"url":"https://api.github.com/repos/idaholab/moose/issues/comments/239226136","html_url":"https://github.com/idaholab/moose/issues/7506#issuecomment-239226136","issue_url":"https://api.github.com/repos/idaholab/moose/issues/7506","id":239226136,"user":{"login":"dschwen","id":202302,"avatar_url":"https://avatars.githubusercontent.com/u/202302?v=3","gravatar_id":"","url":"https://api.github.com/users/dschwen","html_url":"https://github.com/dschwen","followers_url":"https://api.github.com/users/dschwen/followers","following_url":"https://api.github.com/users/dschwen/following{/other_user}","gists_url":"https://api.github.com/users/dschwen/gists{/gist_id}","starred_url":"https://api.github.com/users/dschwen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dschwen/subscriptions","organizations_url":"https://api.github.com/users/dschwen/orgs","repos_url":"https://api.github.com/users/dschwen/repos","events_url":"https://api.github.com/users/dschwen/events{/privacy}","received_events_url":"https://api.github.com/users/dschwen/received_events","type":"User","site_admin":false},"created_at":"2016-08-11T17:10:02Z","updated_at":"2016-08-11T17:10:02Z","body":"Why don't you just run `./scripts/update_and_rebuild_libmesh.sh --disable-hdf5` then?"}}
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