{"action":"created","issue":{"url":"https://api.github.com/repos/OpenMS/OpenMS/issues/1878","repository_url":"https://api.github.com/repos/OpenMS/OpenMS","labels_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/1878/labels{/name}","comments_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/1878/comments","events_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/1878/events","html_url":"https://github.com/OpenMS/OpenMS/pull/1878","id":142424030,"number":1878,"title":"[DEPRECATED] removed PILIS tools","user":{"login":"timosachsenberg","id":5803621,"avatar_url":"https://avatars.githubusercontent.com/u/5803621?v=3","gravatar_id":"","url":"https://api.github.com/users/timosachsenberg","html_url":"https://github.com/timosachsenberg","followers_url":"https://api.github.com/users/timosachsenberg/followers","following_url":"https://api.github.com/users/timosachsenberg/following{/other_user}","gists_url":"https://api.github.com/users/timosachsenberg/gists{/gist_id}","starred_url":"https://api.github.com/users/timosachsenberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/timosachsenberg/subscriptions","organizations_url":"https://api.github.com/users/timosachsenberg/orgs","repos_url":"https://api.github.com/users/timosachsenberg/repos","events_url":"https://api.github.com/users/timosachsenberg/events{/privacy}","received_events_url":"https://api.github.com/users/timosachsenberg/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":4,"created_at":"2016-03-21T17:59:31Z","updated_at":"2016-03-22T13:21:32Z","closed_at":null,"pull_request":{"url":"https://api.github.com/repos/OpenMS/OpenMS/pulls/1878","html_url":"https://github.com/OpenMS/OpenMS/pull/1878","diff_url":"https://github.com/OpenMS/OpenMS/pull/1878.diff","patch_url":"https://github.com/OpenMS/OpenMS/pull/1878.patch"},"body":"Additional include files we could most likely remove are:\r\n```\r\n#include <OpenMS/ANALYSIS/ID/HiddenMarkovModel.h>\t\t\r\n#include <OpenMS/ANALYSIS/ID/ProtonDistributionModel.h>\r\nSuffixArrayPeptideFinder\r\nSuffixArraySeqan\r\n```\r\n\r\nPotentially interesting functions of general use are:\r\nPILISScoring which contains an E-Value calculation algorithm"},"comment":{"url":"https://api.github.com/repos/OpenMS/OpenMS/issues/comments/199810980","html_url":"https://github.com/OpenMS/OpenMS/pull/1878#issuecomment-199810980","issue_url":"https://api.github.com/repos/OpenMS/OpenMS/issues/1878","id":199810980,"user":{"login":"timosachsenberg","id":5803621,"avatar_url":"https://avatars.githubusercontent.com/u/5803621?v=3","gravatar_id":"","url":"https://api.github.com/users/timosachsenberg","html_url":"https://github.com/timosachsenberg","followers_url":"https://api.github.com/users/timosachsenberg/followers","following_url":"https://api.github.com/users/timosachsenberg/following{/other_user}","gists_url":"https://api.github.com/users/timosachsenberg/gists{/gist_id}","starred_url":"https://api.github.com/users/timosachsenberg/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/timosachsenberg/subscriptions","organizations_url":"https://api.github.com/users/timosachsenberg/orgs","repos_url":"https://api.github.com/users/timosachsenberg/repos","events_url":"https://api.github.com/users/timosachsenberg/events{/privacy}","received_events_url":"https://api.github.com/users/timosachsenberg/received_events","type":"User","site_admin":false},"created_at":"2016-03-22T13:21:32Z","updated_at":"2016-03-22T13:21:32Z","body":"Those modules might be closely associated with PILIS and should be checked for general use in the future\r\n```\r\n        292 - BinnedSharedPeakCount_test (Failed)\r\n        293 - BinnedSpectralContrastAngle_test (Failed)\r\n        295 - BinnedSpectrum_test (Failed)\r\n        296 - BinnedSumAgreeingIntensities_test (Failed)\r\n        299 - ClusterHierarchical_test (Failed)\r\n        302 - PeakAlignment_test (Failed)\r\n        311 - ZhangSimilarityScore_test (Failed)\r\n```"}}