{"action":"created","issue":{"url":"https://api.github.com/repos/COMBINE-lab/salmon/issues/45","repository_url":"https://api.github.com/repos/COMBINE-lab/salmon","labels_url":"https://api.github.com/repos/COMBINE-lab/salmon/issues/45/labels{/name}","comments_url":"https://api.github.com/repos/COMBINE-lab/salmon/issues/45/comments","events_url":"https://api.github.com/repos/COMBINE-lab/salmon/issues/45/events","html_url":"https://github.com/COMBINE-lab/salmon/issues/45","id":139336511,"number":45,"title":"Salmon depends on Staden depends on xz for lzma.h","user":{"login":"sjackman","id":291551,"avatar_url":"https://avatars.githubusercontent.com/u/291551?v=3","gravatar_id":"","url":"https://api.github.com/users/sjackman","html_url":"https://github.com/sjackman","followers_url":"https://api.github.com/users/sjackman/followers","following_url":"https://api.github.com/users/sjackman/following{/other_user}","gists_url":"https://api.github.com/users/sjackman/gists{/gist_id}","starred_url":"https://api.github.com/users/sjackman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sjackman/subscriptions","organizations_url":"https://api.github.com/users/sjackman/orgs","repos_url":"https://api.github.com/users/sjackman/repos","events_url":"https://api.github.com/users/sjackman/events{/privacy}","received_events_url":"https://api.github.com/users/sjackman/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"milestone":null,"comments":2,"created_at":"2016-03-08T17:11:05Z","updated_at":"2016-03-08T19:53:57Z","closed_at":null,"body":"https://travis-ci.org/Homebrew/homebrew-science/jobs/114404533#L1110-L1115\r\n```\r\n/bin/sh ../libtool  --tag=CC   --mode=compile /usr/local/Library/ENV/4.3/clang -DHAVE_CONFIG_H -I. -I.. -I..    -I/usr/local/include -L/usr/local/lib -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c -o libstaden_read_la-cram_io.lo `test -f 'cram_io.c' || echo './'`cram_io.c\r\nlibtool: compile:  /usr/local/Library/ENV/4.3/clang -DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include -L/usr/local/lib -MT libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c cram_io.c -o libstaden_read_la-cram_io.o\r\ncram_io.c:66:10: fatal error: 'lzma.h' file not found\r\n#include <lzma.h>\r\n         ^\r\n1 error generated.\r\nmake[5]: *** [libstaden_read_la-cram_io.lo] Error 1\r\nmake[4]: *** [all-recursive] Error 1\r\nmake[3]: *** [all] Error 2\r\nmake[2]: *** [libstadenio-prefix/src/libstadenio-stamp/libstadenio-build] Error 2\r\nmake[1]: *** [CMakeFiles/libstadenio.dir/all] Error 2\r\nmake: *** [all] Error 2\r\n```"},"comment":{"url":"https://api.github.com/repos/COMBINE-lab/salmon/issues/comments/193941254","html_url":"https://github.com/COMBINE-lab/salmon/issues/45#issuecomment-193941254","issue_url":"https://api.github.com/repos/COMBINE-lab/salmon/issues/45","id":193941254,"user":{"login":"sjackman","id":291551,"avatar_url":"https://avatars.githubusercontent.com/u/291551?v=3","gravatar_id":"","url":"https://api.github.com/users/sjackman","html_url":"https://github.com/sjackman","followers_url":"https://api.github.com/users/sjackman/followers","following_url":"https://api.github.com/users/sjackman/following{/other_user}","gists_url":"https://api.github.com/users/sjackman/gists{/gist_id}","starred_url":"https://api.github.com/users/sjackman/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/sjackman/subscriptions","organizations_url":"https://api.github.com/users/sjackman/orgs","repos_url":"https://api.github.com/users/sjackman/repos","events_url":"https://api.github.com/users/sjackman/events{/privacy}","received_events_url":"https://api.github.com/users/sjackman/received_events","type":"User","site_admin":false},"created_at":"2016-03-08T19:53:57Z","updated_at":"2016-03-08T19:53:57Z","body":"I'd rather not bundle the dependency. Troubleshooting bundled dependencies is crazy making. The `cmake` script could check that the dependency is satisfied and report an error message if it's not. Or I suppose install the dependency if it's not satisfied. Perhaps that's what you were thinking.\r\nIn any case, here's the web site: http://tukaani.org/xz/\r\nand git repository: http://git.tukaani.org/\r\nHere's a GitHub mirror. I don't know whether it's current: https://github.com/nobled/xz"}}