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,"closed_at":null},"comments":17,"created_at":"2016-08-16T09:10:51Z","updated_at":"2016-08-16T16:07:21Z","closed_at":null,"body":"I tried to process a relatively small evaluation file (twice) on Jenny and 6 hours later it had not finished (by comparison the first 99 evaluation files finished in 30 minutes). There is something odd about this file that we need to investigate and figure out what's going on with our system. I was using 64G of memory and 24 threads on Jenny.\r\n\r\nThe file is PMC4674766.nxml located on Jenny at:\r\n/net/kate/storage/work/hickst/Documents/reach/nxml.last1\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/clulab/reach/issues/comments/240151023","html_url":"https://github.com/clulab/reach/issues/317#issuecomment-240151023","issue_url":"https://api.github.com/repos/clulab/reach/issues/317","id":240151023,"user":{"login":"myedibleenso","id":1137472,"avatar_url":"https://avatars.githubusercontent.com/u/1137472?v=3","gravatar_id":"","url":"https://api.github.com/users/myedibleenso","html_url":"https://github.com/myedibleenso","followers_url":"https://api.github.com/users/myedibleenso/followers","following_url":"https://api.github.com/users/myedibleenso/following{/other_user}","gists_url":"https://api.github.com/users/myedibleenso/gists{/gist_id}","starred_url":"https://api.github.com/users/myedibleenso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/myedibleenso/subscriptions","organizations_url":"https://api.github.com/users/myedibleenso/orgs","repos_url":"https://api.github.com/users/myedibleenso/repos","events_url":"https://api.github.com/users/myedibleenso/events{/privacy}","received_events_url":"https://api.github.com/users/myedibleenso/received_events","type":"User","site_admin":false},"created_at":"2016-08-16T16:07:21Z","updated_at":"2016-08-16T16:07:21Z","body":"> Even that crude logging is showing that calls to getInputFeaturesByParticipants are taking as long as 4 minutes per call on the problem file.\r\n\r\nAlright, that's helpful.  Will look into it.\r\n\r\nRegarding the logger, you can log whatever message you want.  I'm not sure the granularity of the log message timing, but you could always send your custom message to the logger."}}
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