{"action":"created","issue":{"url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/issues/22","repository_url":"https://api.github.com/repos/MyersResearchGroup/iBioSim","labels_url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/issues/22/labels{/name}","comments_url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/issues/22/comments","events_url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/issues/22/events","html_url":"https://github.com/MyersResearchGroup/iBioSim/issues/22","id":187772043,"number":22,"title":"FEATURE: allow a model to read diffusible species in neighbor grid locations","user":{"login":"buggsley","id":22898080,"avatar_url":"https://avatars.githubusercontent.com/u/22898080?v=3","gravatar_id":"","url":"https://api.github.com/users/buggsley","html_url":"https://github.com/buggsley","followers_url":"https://api.github.com/users/buggsley/followers","following_url":"https://api.github.com/users/buggsley/following{/other_user}","gists_url":"https://api.github.com/users/buggsley/gists{/gist_id}","starred_url":"https://api.github.com/users/buggsley/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/buggsley/subscriptions","organizations_url":"https://api.github.com/users/buggsley/orgs","repos_url":"https://api.github.com/users/buggsley/repos","events_url":"https://api.github.com/users/buggsley/events{/privacy}","received_events_url":"https://api.github.com/users/buggsley/received_events","type":"User","site_admin":false},"labels":[{"id":477022002,"url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/labels/assignee_leandrohw","name":"assignee_leandrohw","color":"c84543","default":false},{"id":477022001,"url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/labels/BioSim","name":"BioSim","color":"26f9fc","default":false}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":{"url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/milestones/1","html_url":"https://github.com/MyersResearchGroup/iBioSim/milestones/3.1","labels_url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/milestones/1/labels","id":2119603,"number":1,"title":"3.1","description":null,"creator":{"login":"buggsley","id":22898080,"avatar_url":"https://avatars.githubusercontent.com/u/22898080?v=3","gravatar_id":"","url":"https://api.github.com/users/buggsley","html_url":"https://github.com/buggsley","followers_url":"https://api.github.com/users/buggsley/followers","following_url":"https://api.github.com/users/buggsley/following{/other_user}","gists_url":"https://api.github.com/users/buggsley/gists{/gist_id}","starred_url":"https://api.github.com/users/buggsley/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/buggsley/subscriptions","organizations_url":"https://api.github.com/users/buggsley/orgs","repos_url":"https://api.github.com/users/buggsley/repos","events_url":"https://api.github.com/users/buggsley/events{/privacy}","received_events_url":"https://api.github.com/users/buggsley/received_events","type":"User","site_admin":false},"open_issues":15,"closed_issues":0,"state":"open","created_at":"2016-11-07T17:14:26Z","updated_at":"2016-11-07T17:16:48Z","due_on":null,"closed_at":null},"comments":0,"created_at":"2016-11-07T17:16:48Z","updated_at":"2016-11-07T17:16:48Z","closed_at":null,"body":"Add special functions with simple default behavior which can enable a model when used in a grid to read the value of a diffusible species in a neighboring grid location.  After flattening, these functions should be replaced with the appropriate species names.\n\n\n"},"comment":{"url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/issues/comments/258899421","html_url":"https://github.com/MyersResearchGroup/iBioSim/issues/22#issuecomment-258899421","issue_url":"https://api.github.com/repos/MyersResearchGroup/iBioSim/issues/22","id":258899421,"user":{"login":"buggsley","id":22898080,"avatar_url":"https://avatars.githubusercontent.com/u/22898080?v=3","gravatar_id":"","url":"https://api.github.com/users/buggsley","html_url":"https://github.com/buggsley","followers_url":"https://api.github.com/users/buggsley/followers","following_url":"https://api.github.com/users/buggsley/following{/other_user}","gists_url":"https://api.github.com/users/buggsley/gists{/gist_id}","starred_url":"https://api.github.com/users/buggsley/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/buggsley/subscriptions","organizations_url":"https://api.github.com/users/buggsley/orgs","repos_url":"https://api.github.com/users/buggsley/repos","events_url":"https://api.github.com/users/buggsley/events{/privacy}","received_events_url":"https://api.github.com/users/buggsley/received_events","type":"User","site_admin":false},"created_at":"2016-11-07T17:16:48Z","updated_at":"2016-11-07T17:16:48Z","body":"From Jason:\n\nPretty sure they're functional--last time I checked they were.  There should be\nsomething somewhere (a \ncomment?) about what the arguments are.  One of them is used in the program and\nhas full information and one \nis shorthand (the one-argument one) that you use in GUI, I think.  There should\nbe code that looks for those \nfunction names and then parses the arguments.  If I recall correctly, the\narguments are the compartment name, \nthe x position, and the y position?  Something like that.\n\ngetCompartmentLocation returns the compartment location x or y position.  It's\nused in conjunction with the \nneighborquantity functions to get the position.  I think the one with only a\nsingle argument is just the \ncompartment name, and then the program adds the other two arguments\nautomatically because you can't specify \nthose before runtime.\n\nSo if you're using the neighborQuantity functions, you only use the ones with\none argument.  The other one is \nonly used at runtime by the simulator.\n"}}
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