{"action":"closed","issue":{"url":"https://api.github.com/repos/robinandeer/puzzle/issues/188","repository_url":"https://api.github.com/repos/robinandeer/puzzle","labels_url":"https://api.github.com/repos/robinandeer/puzzle/issues/188/labels{/name}","comments_url":"https://api.github.com/repos/robinandeer/puzzle/issues/188/comments","events_url":"https://api.github.com/repos/robinandeer/puzzle/issues/188/events","html_url":"https://github.com/robinandeer/puzzle/issues/188","id":140141431,"number":188,"title":"KeyError raised when cyvcf2 loads FindSV vcfs","user":{"login":"dnil","id":758570,"avatar_url":"https://avatars.githubusercontent.com/u/758570?v=3","gravatar_id":"","url":"https://api.github.com/users/dnil","html_url":"https://github.com/dnil","followers_url":"https://api.github.com/users/dnil/followers","following_url":"https://api.github.com/users/dnil/following{/other_user}","gists_url":"https://api.github.com/users/dnil/gists{/gist_id}","starred_url":"https://api.github.com/users/dnil/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/dnil/subscriptions","organizations_url":"https://api.github.com/users/dnil/orgs","repos_url":"https://api.github.com/users/dnil/repos","events_url":"https://api.github.com/users/dnil/events{/privacy}","received_events_url":"https://api.github.com/users/dnil/received_events","type":"User","site_admin":false},"labels":[],"state":"closed","locked":false,"assignee":null,"milestone":null,"comments":3,"created_at":"2016-03-11T09:52:25Z","updated_at":"2016-03-11T10:20:32Z","closed_at":"2016-03-11T10:20:32Z","body":"I'm getting a \"KeyError\" when cyvcf2 tries to fetch INFO-fields from a FindSV VCF. Known issue? Any additional refactor in progress around there or can I safely debug? ;-)\r\n\r\n```\r\n[2016-03-11 10:43:24,499] puzzle.server.factory     ERROR    Exception on /variants/P2760_102_head_5.vcf [GET]\r\nTraceback (most recent call last):\r\n...\r\n File \"/Users/daniel/sandbox/puzzle/puzzle/server/blueprints/variants/templates/sv_variants.html\", line 3, in top-level template code\r\n    {% from \"macros/filters.html\" import filters_form %}\r\n...\r\n File \"/Users/daniel/sandbox/puzzle/puzzle/server/blueprints/variants/templates/sv_variants.html\", line 38, in block \"container\"\r\n    {% for variant in variants %}\r\n File \"/Users/daniel/sandbox/puzzle/puzzle/plugins/vcf/mixins/variant_mixin.py\", line 119, in variants\r\n    case_obj=case_obj,\r\n  File \"/Users/daniel/sandbox/puzzle/puzzle/plugins/vcf/mixins/variant_mixin.py\", line 232, in _format_variants\r\n    info_dict = dict(variant.INFO)\r\n  File \"cyvcf2/cyvcf2.pyx\", line 1271, in cyvcf2.cyvcf2.INFO.__next__ (cyvcf2/cyvcf2.c:26404)\r\n    return name, self._getval(info) \r\nFile \"cyvcf2/cyvcf2.pyx\", line 1218, in cyvcf2.cyvcf2.INFO._getval (cyvcf2/cyvcf2.c:25476)\r\n    raise KeyError\r\nKeyError\r\n[2016-03-11 10:43:24,503] werkzeug                  INFO     127.0.0.1 - - [11/Mar/2016 10:43:24] \"GET /variants/P2760_102_head_5.vcf HTTP/1.1\" 500 -\r\n```"}}