{"action":"created","issue":{"url":"https://api.github.com/repos/Kamnitsask/deepmedic/issues/16","repository_url":"https://api.github.com/repos/Kamnitsask/deepmedic","labels_url":"https://api.github.com/repos/Kamnitsask/deepmedic/issues/16/labels{/name}","comments_url":"https://api.github.com/repos/Kamnitsask/deepmedic/issues/16/comments","events_url":"https://api.github.com/repos/Kamnitsask/deepmedic/issues/16/events","html_url":"https://github.com/Kamnitsask/deepmedic/issues/16","id":174273100,"number":16,"title":"Testing on the gpu fails:","user":{"login":"josephwinston","id":226217,"avatar_url":"https://avatars.githubusercontent.com/u/226217?v=3","gravatar_id":"","url":"https://api.github.com/users/josephwinston","html_url":"https://github.com/josephwinston","followers_url":"https://api.github.com/users/josephwinston/followers","following_url":"https://api.github.com/users/josephwinston/following{/other_user}","gists_url":"https://api.github.com/users/josephwinston/gists{/gist_id}","starred_url":"https://api.github.com/users/josephwinston/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/josephwinston/subscriptions","organizations_url":"https://api.github.com/users/josephwinston/orgs","repos_url":"https://api.github.com/users/josephwinston/repos","events_url":"https://api.github.com/users/josephwinston/events{/privacy}","received_events_url":"https://api.github.com/users/josephwinston/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":0,"created_at":"2016-08-31T13:28:16Z","updated_at":"2016-08-31T15:43:14Z","closed_at":null,"body":"I'm on eba26d7 and when I test the model following the example in ```README.md```, the following error is displayed:\r\n\r\n```python\r\nTraceback (most recent call last):\r\n  File \"deepMedicRun\", line 109, in <module>\r\n    deepMedicTest.deepMedicTestMain(absPathToTestConf, absPathToCnnModelGivenInCmdLine)\r\n  File \"D:\\home\\josephwinston\\src\\Remote\\GIT\\deepmedic\\deepmedic\\frontEndModules\\deepMedicTest.py\", line 265, in deepMedicTestMain\r\n    listOfAListPerChannelWithFilepathsOfAllCases = [parseAbsFileLinesInList(getAbsPathEvenIfRelativeIsGiven(channelConfPath, testConfigFilepath)) for channelConfPath in configGet(testConfig.CHANNELS)]\r\n\r\nTypeError: 'NoneType' object is not iterable\r\n```\r\nInvocation that I am using and the output from the run is:\r\n\r\n```python\r\n(theano) $ python deepMedicRun -test examples/configFiles/tinyCnn/train/trainConfigWithValidation.cfg -model \"examples/output/cnnModels/trainSessionWithVal\r\nidTinyCnn/tinyCnn.trainSessionWithValidTinyCnn.final.2016-08-31 08.07.18.906000.save\"\r\nGiven Test-Configuration File:  D:\\home\\josephwinston\\src\\Remote\\GIT\\deepmedic\\examples\\configFiles\\tinyCnn\\train\\trainConfigWithValidation.cfg\r\n>>Creating necessary folders for testing-session...\r\nCONFIG: The configuration file for the testing session was loaded from: D:\\home\\josephwinston\\src\\Remote\\GIT\\deepmedic\\examples\\configFiles\\tinyCnn\\train\\trainConfigWithValidation.cfg\r\n=========== Loading the CNN model for testing... ===============\r\nWARN: A CNN-Model to use was specified both in the command line input and in the test-config-file! The input by the command line will be used: D:\\home\\josephwinston\\src\\Remote\\GIT\\deepmedic\\examples\\o\r\nutput\\cnnModels\\trainSessionWithValidTinyCnn\\tinyCnn.trainSessionWithValidTinyCnn.final.2016-08-31 08.07.18.906000.save\r\n...Loading the network can take a few minutes if the model is big...\r\nDEBUG: nvcc STDOUT mod.cu\r\n   Creating library C:/Users/hb55683/AppData/Local/Theano/compiledir_Windows-7-6.1.7601-SP1-Intel64_Family_6_Model_60_Stepping_3_GenuineIntel-2.7.12-64/tmpdyp3uv/265abc51f7c376c224983485238ff1a5.lib a\r\nnd object C:/Users/hb55683/AppData/Local/Theano/compiledir_Windows-7-6.1.7601-SP1-Intel64_Family_6_Model_60_Stepping_3_GenuineIntel-2.7.12-64/tmpdyp3uv/265abc51f7c376c224983485238ff1a5.exp\r\n\r\nUsing gpu device 0: Quadro K5100M (CNMeM is enabled with initial size: 95.0% of memory, cuDNN 5005)\r\nThe CNN model was loaded successfully from: D:\\home\\josephwinston\\src\\Remote\\GIT\\deepmedic\\examples\\output\\cnnModels\\trainSessionWithValidTinyCnn\\tinyCnn.trainSessionWithValidTinyCnn.final.2016-08-31\r\n08.07.18.906000.save\r\nTraceback (most recent call last):\r\n  File \"deepMedicRun\", line 109, in <module>\r\n    deepMedicTest.deepMedicTestMain(absPathToTestConf, absPathToCnnModelGivenInCmdLine)\r\n  File \"D:\\home\\josephwinston\\src\\Remote\\GIT\\deepmedic\\deepmedic\\frontEndModules\\deepMedicTest.py\", line 265, in deepMedicTestMain\r\n    listOfAListPerChannelWithFilepathsOfAllCases = [parseAbsFileLinesInList(getAbsPathEvenIfRelativeIsGiven(channelConfPath, testConfigFilepath)) for channelConfPath in configGet(testConfig.CHANNELS)]\r\n\r\nTypeError: 'NoneType' object is not iterable\r\n```\r\n"},"comment":{"url":"https://api.github.com/repos/Kamnitsask/deepmedic/issues/comments/243806568","html_url":"https://github.com/Kamnitsask/deepmedic/issues/16#issuecomment-243806568","issue_url":"https://api.github.com/repos/Kamnitsask/deepmedic/issues/16","id":243806568,"user":{"login":"Kamnitsask","id":3279937,"avatar_url":"https://avatars.githubusercontent.com/u/3279937?v=3","gravatar_id":"","url":"https://api.github.com/users/Kamnitsask","html_url":"https://github.com/Kamnitsask","followers_url":"https://api.github.com/users/Kamnitsask/followers","following_url":"https://api.github.com/users/Kamnitsask/following{/other_user}","gists_url":"https://api.github.com/users/Kamnitsask/gists{/gist_id}","starred_url":"https://api.github.com/users/Kamnitsask/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/Kamnitsask/subscriptions","organizations_url":"https://api.github.com/users/Kamnitsask/orgs","repos_url":"https://api.github.com/users/Kamnitsask/repos","events_url":"https://api.github.com/users/Kamnitsask/events{/privacy}","received_events_url":"https://api.github.com/users/Kamnitsask/received_events","type":"User","site_admin":false},"created_at":"2016-08-31T15:43:14Z","updated_at":"2016-08-31T15:43:14Z","body":"Hello Joseph,\r\n\r\n\"python deepMedicRun -test examples/configFiles/tinyCnn/train/trainConfigWithValidation.cfg\"\r\nIt seems you pointed to the \"training config\" when trying to test. You should point to the corresponding testing one. ie, at tinyCnn/test/testConfig.cfg.\r\n\r\nLet me know if everything goes fine after that.\r\n\r\nMany many thanks for the feedback Joseph. And I am sorry for the little informative error messages. It will require some time until I improve over the checks and errors thrown...\r\n\r\nKostas "}}
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