{"action":"created","issue":{"url":"https://api.github.com/repos/AlexGa/Phylostratigraphy/issues/1","repository_url":"https://api.github.com/repos/AlexGa/Phylostratigraphy","labels_url":"https://api.github.com/repos/AlexGa/Phylostratigraphy/issues/1/labels{/name}","comments_url":"https://api.github.com/repos/AlexGa/Phylostratigraphy/issues/1/comments","events_url":"https://api.github.com/repos/AlexGa/Phylostratigraphy/issues/1/events","html_url":"https://github.com/AlexGa/Phylostratigraphy/issues/1","id":188744161,"number":1,"title":"Perl error in the $seqHash","user":{"login":"evolgenomology","id":2168430,"avatar_url":"https://avatars.githubusercontent.com/u/2168430?v=3","gravatar_id":"","url":"https://api.github.com/users/evolgenomology","html_url":"https://github.com/evolgenomology","followers_url":"https://api.github.com/users/evolgenomology/followers","following_url":"https://api.github.com/users/evolgenomology/following{/other_user}","gists_url":"https://api.github.com/users/evolgenomology/gists{/gist_id}","starred_url":"https://api.github.com/users/evolgenomology/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/evolgenomology/subscriptions","organizations_url":"https://api.github.com/users/evolgenomology/orgs","repos_url":"https://api.github.com/users/evolgenomology/repos","events_url":"https://api.github.com/users/evolgenomology/events{/privacy}","received_events_url":"https://api.github.com/users/evolgenomology/received_events","type":"User","site_admin":false},"labels":[],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":2,"created_at":"2016-11-11T11:52:35Z","updated_at":"2016-11-11T13:51:29Z","closed_at":null,"body":"Hi there,\r\n\r\nI am getting the following error trying to run the program:\r\n\r\n```\r\nType of arg 1 to keys must be hash (not private variable) at ../Phylostratigraphy/createPSmap.pl line 196, near \"$seqHash;\"\r\nExecution of ../Phylostratigraphy/createPSmap.pl aborted due to compilation errors.\r\n```.\r\nI thought it might be the headers of my file. I have:\r\n```>ANAN_ju_g16.t1  | [Arobeloides nanus] | [Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Cephaloboidea; Cephalobidae; Acrobeloides]\r\nSKLVEFGDTIFIALRKRPLTFLHCYHHCSVLIYTFHSGAEHLASGRWFMWMNFIAHSVMYTYFCAVSAGIKVPRKLAKCVTLIQITQMILGIGVSLSVFA\r\nIKSLTSWRCHQSYTNLYLSFFIYVSYAILFIRFFINAYSPNKKVIESDKQK\r\n```.\r\nBut I am not sure. Would be great if you could look into this.\r\n\r\nCheers\r\n\r\nPhilipp\r\n"},"comment":{"url":"https://api.github.com/repos/AlexGa/Phylostratigraphy/issues/comments/259961184","html_url":"https://github.com/AlexGa/Phylostratigraphy/issues/1#issuecomment-259961184","issue_url":"https://api.github.com/repos/AlexGa/Phylostratigraphy/issues/1","id":259961184,"user":{"login":"evolgenomology","id":2168430,"avatar_url":"https://avatars.githubusercontent.com/u/2168430?v=3","gravatar_id":"","url":"https://api.github.com/users/evolgenomology","html_url":"https://github.com/evolgenomology","followers_url":"https://api.github.com/users/evolgenomology/followers","following_url":"https://api.github.com/users/evolgenomology/following{/other_user}","gists_url":"https://api.github.com/users/evolgenomology/gists{/gist_id}","starred_url":"https://api.github.com/users/evolgenomology/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/evolgenomology/subscriptions","organizations_url":"https://api.github.com/users/evolgenomology/orgs","repos_url":"https://api.github.com/users/evolgenomology/repos","events_url":"https://api.github.com/users/evolgenomology/events{/privacy}","received_events_url":"https://api.github.com/users/evolgenomology/received_events","type":"User","site_admin":false},"created_at":"2016-11-11T13:51:29Z","updated_at":"2016-11-11T13:51:29Z","body":"Further downstream I am now getting:\r\n```\r\nException in thread \"main\" java.lang.NoClassDefFoundError: org/apache/commons/cli/ParseException\r\n        at java.lang.Class.forName0(java.base@9-ea/Native Method)\r\n        at java.lang.Class.forName(java.base@9-ea/Class.java:374)\r\n        at org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader.main(JarRsrcLoader.java:56)\r\nCaused by: java.lang.ClassNotFoundException: org.apache.commons.cli.ParseException\r\n        at java.net.URLClassLoader.findClass(java.base@9-ea/URLClassLoader.java:388)\r\n        at java.lang.ClassLoader.loadClass(java.base@9-ea/ClassLoader.java:486)\r\n        at java.lang.ClassLoader.loadClass(java.base@9-ea/ClassLoader.java:419)\r\n        ... 3 more\r\nException in thread \"main\" java.lang.NoClassDefFoundError: org/apache/commons/cli/ParseException\r\n        at java.lang.Class.forName0(java.base@9-ea/Native Method)\r\n        at java.lang.Class.forName(java.base@9-ea/Class.java:374)\r\n        at org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader.main(JarRsrcLoader.java:56)\r\nCaused by: java.lang.ClassNotFoundException: org.apache.commons.cli.ParseException\r\n        at java.net.URLClassLoader.findClass(java.base@9-ea/URLClassLoader.java:388)\r\n        at java.lang.ClassLoader.loadClass(java.base@9-ea/ClassLoader.java:486)\r\n        at java.lang.ClassLoader.loadClass(java.base@9-ea/ClassLoader.java:419)\r\n        ... 3 more\r\n```.\r\n\r\n"}}
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