{"action":"created","comment":{"url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/comments/81499058","pull_request_review_id":2474605,"id":81499058,"diff_hunk":"@@ -2,28 +2,30 @@\n cisCton is a copy number variation caller, which detects the CNAs by comparing target samples and normal samples.\n \n Note:\n-\tcisCton requites bam files generated by running cisMuton. So please run cisMuton beforehand. See \"[cisCton Arguments](#arguments)\" for details.\n+cisCton requires bam files generated by running cisMuton. So please run cisMuton beforehand. \n+- See \"[cisCton Arguments](#arguments)\" for details.\n+- See [cisMuton (point mutation caller)](./muton.md) for further information about cisMuton.\n \n Running cisCton is performed like this:\n \n ```\n-python3 <path to ciscall.py> \\\n-    -a <analysis type> \\\n-    -d <data directory> \\\n-    -w <working directory> \\\n-    -m <path to samtools> \\\n-    -b <path to bigWigToBedGraph> \\\n-    <sample data> \\\n-    <normal sample data> \\\n-    -p <group> \\\n+python3 ${path_to_ciscall.py} \\","path":"doc/cton.md","position":21,"original_position":21,"commit_id":"bfe72c25ce93e9976725b24596d0ee2e67683e8d","original_commit_id":"bfe72c25ce93e9976725b24596d0ee2e67683e8d","user":{"login":"joemphilips","id":10084960,"avatar_url":"https://avatars.githubusercontent.com/u/10084960?v=3","gravatar_id":"","url":"https://api.github.com/users/joemphilips","html_url":"https://github.com/joemphilips","followers_url":"https://api.github.com/users/joemphilips/followers","following_url":"https://api.github.com/users/joemphilips/following{/other_user}","gists_url":"https://api.github.com/users/joemphilips/gists{/gist_id}","starred_url":"https://api.github.com/users/joemphilips/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/joemphilips/subscriptions","organizations_url":"https://api.github.com/users/joemphilips/orgs","repos_url":"https://api.github.com/users/joemphilips/repos","events_url":"https://api.github.com/users/joemphilips/events{/privacy}","received_events_url":"https://api.github.com/users/joemphilips/received_events","type":"User","site_admin":false},"body":"よく見るやり方なので問題ないと思います。\r\n(というか正直に申し上げますと`${path_to_ciscall.py}`でも`/path/to/ciscall.py`でも、ユーザーには確実に伝わるのでどちらでもよいと思います。)","created_at":"2016-10-03T07:07:32Z","updated_at":"2016-10-03T07:07:32Z","html_url":"https://github.com/NCCJapan/cisCall5_doc/pull/12#discussion_r81499058","pull_request_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/12","_links":{"self":{"href":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/comments/81499058"},"html":{"href":"https://github.com/NCCJapan/cisCall5_doc/pull/12#discussion_r81499058"},"pull_request":{"href":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/12"}}},"pull_request":{"url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/12","id":87467034,"html_url":"https://github.com/NCCJapan/cisCall5_doc/pull/12","diff_url":"https://github.com/NCCJapan/cisCall5_doc/pull/12.diff","patch_url":"https://github.com/NCCJapan/cisCall5_doc/pull/12.patch","issue_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/issues/12","number":12,"state":"open","locked":false,"title":"Minor Change for cisCton 1","user":{"login":"monagai","id":13533333,"avatar_url":"https://avatars.githubusercontent.com/u/13533333?v=3","gravatar_id":"","url":"https://api.github.com/users/monagai","html_url":"https://github.com/monagai","followers_url":"https://api.github.com/users/monagai/followers","following_url":"https://api.github.com/users/monagai/following{/other_user}","gists_url":"https://api.github.com/users/monagai/gists{/gist_id}","starred_url":"https://api.github.com/users/monagai/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/monagai/subscriptions","organizations_url":"https://api.github.com/users/monagai/orgs","repos_url":"https://api.github.com/users/monagai/repos","events_url":"https://api.github.com/users/monagai/events{/privacy}","received_events_url":"https://api.github.com/users/monagai/received_events","type":"User","site_admin":false},"body":"cton.mdのminor changeを入れました。\r\nslackに\"致命的エラが1箇所\"と書きましたが、それは私の見間違いで、致命的エラーはありませんでした。\r\n一応ご確認お願いします","created_at":"2016-09-30T10:06:35Z","updated_at":"2016-10-03T07:07:32Z","closed_at":null,"merged_at":null,"merge_commit_sha":"f6984a1d8b72a743ea1c670df14f9c2e3e7f1eba","assignee":null,"assignees":[],"milestone":null,"commits_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/12/commits","review_comments_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/12/comments","review_comment_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/pulls/comments{/number}","comments_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/issues/12/comments","statuses_url":"https://api.github.com/repos/NCCJapan/cisCall5_doc/statuses/bfe72c25ce93e9976725b24596d0ee2e67683e8d","head":{"label":"NCCJapan:minor-change_Cton","ref":"minor-change_Cton","sha":"bfe72c25ce93e9976725b24596d0ee2e67683e8d","user":{"login":"NCCJapan","id":13513984,"avatar_url":"https://avatars.githubusercontent.com/u/13513984?v=3","gravatar_id":"","url":"https://api.github.com/users/NCCJapan","html_url":"https://github.com/NCCJapan","followers_url":"https://api.github.com/users/NCCJapan/followers","following_url":"https://api.github.com/users/NCCJapan/following{/other_user}","gists_url":"https://api.github.com/users/NCCJapan/gists{/gist_id}","starred_url":"https://api.github.com/users/NCCJapan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NCCJapan/subscriptions","organizations_url":"https://api.github.com/users/NCCJapan/orgs","repos_url":"https://api.github.com/users/NCCJapan/repos","events_url":"https://api.github.com/users/NCCJapan/events{/privacy}","received_events_url":"https://api.github.com/users/NCCJapan/received_events","type":"Organization","site_admin":false},"repo":{"id":66815704,"name":"cisCall5_doc","full_name":"NCCJapan/cisCall5_doc","owner":{"login":"NCCJapan","id":13513984,"avatar_url":"https://avatars.githubusercontent.com/u/13513984?v=3","gravatar_id":"","url":"https://api.github.com/users/NCCJapan","html_url":"https://github.com/NCCJapan","followers_url":"https://api.github.com/users/NCCJapan/followers","following_url":"https://api.github.com/users/NCCJapan/following{/other_user}","gists_url":"https://api.github.com/users/NCCJapan/gists{/gist_id}","starred_url":"https://api.github.com/users/NCCJapan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/NCCJapan/subscriptions","organizations_url":"https://api.github.com/users/NCCJapan/orgs","repos_url":"https://api.github.com/users/NCCJapan/repos","events_url":"https://api.github.com/users/NCCJapan/events{/privacy}","received_events_url":"https://api.github.com/users/NCCJapan/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/NCCJapan/cisCall5_doc","description":"repository 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