{"action":"opened","issue":{"url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/114","repository_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment","labels_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/114/labels{/name}","comments_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/114/comments","events_url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/issues/114/events","html_url":"https://github.com/vjcitn/MultiAssayExperiment/issues/114","id":140148553,"number":114,"title":"assay() methods","user":{"login":"lwaldron","id":639942,"avatar_url":"https://avatars.githubusercontent.com/u/639942?v=3","gravatar_id":"","url":"https://api.github.com/users/lwaldron","html_url":"https://github.com/lwaldron","followers_url":"https://api.github.com/users/lwaldron/followers","following_url":"https://api.github.com/users/lwaldron/following{/other_user}","gists_url":"https://api.github.com/users/lwaldron/gists{/gist_id}","starred_url":"https://api.github.com/users/lwaldron/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/lwaldron/subscriptions","organizations_url":"https://api.github.com/users/lwaldron/orgs","repos_url":"https://api.github.com/users/lwaldron/repos","events_url":"https://api.github.com/users/lwaldron/events{/privacy}","received_events_url":"https://api.github.com/users/lwaldron/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/vjcitn/MultiAssayExperiment/labels/question","name":"question","color":"cc317c"}],"state":"open","locked":false,"assignee":{"login":"mtmorgan","id":118552,"avatar_url":"https://avatars.githubusercontent.com/u/118552?v=3","gravatar_id":"","url":"https://api.github.com/users/mtmorgan","html_url":"https://github.com/mtmorgan","followers_url":"https://api.github.com/users/mtmorgan/followers","following_url":"https://api.github.com/users/mtmorgan/following{/other_user}","gists_url":"https://api.github.com/users/mtmorgan/gists{/gist_id}","starred_url":"https://api.github.com/users/mtmorgan/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/mtmorgan/subscriptions","organizations_url":"https://api.github.com/users/mtmorgan/orgs","repos_url":"https://api.github.com/users/mtmorgan/repos","events_url":"https://api.github.com/users/mtmorgan/events{/privacy}","received_events_url":"https://api.github.com/users/mtmorgan/received_events","type":"User","site_admin":false},"milestone":null,"comments":0,"created_at":"2016-03-11T10:27:55Z","updated_at":"2016-03-11T10:27:55Z","closed_at":null,"body":"Proposal for Martin to discuss with Herve:\r\n\r\n- add `assay` method for `ExpressionSet`, that is just an alias for `exprs`\r\n- should we make `I` the default `assay` method for any `Elist` element that does not have an `assay` method of its own? This would negate our needing for us to define it for `matrix`.\r\n\r\nThe typical use I have in mind for `assay()` is to consistently return a numeric matrix from the different data classes, for data analysis such as calculating correlations between columns or rows."}}