{"action":"created","issue":{"url":"https://api.github.com/repos/Bioconductor/Contributions/issues/122","repository_url":"https://api.github.com/repos/Bioconductor/Contributions","labels_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/122/labels{/name}","comments_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/122/comments","events_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/122/events","html_url":"https://github.com/Bioconductor/Contributions/issues/122","id":178109574,"number":122,"title":"MutationalPatterns","user":{"login":"roelj","id":1129198,"avatar_url":"https://avatars.githubusercontent.com/u/1129198?v=3","gravatar_id":"","url":"https://api.github.com/users/roelj","html_url":"https://github.com/roelj","followers_url":"https://api.github.com/users/roelj/followers","following_url":"https://api.github.com/users/roelj/following{/other_user}","gists_url":"https://api.github.com/users/roelj/gists{/gist_id}","starred_url":"https://api.github.com/users/roelj/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/roelj/subscriptions","organizations_url":"https://api.github.com/users/roelj/orgs","repos_url":"https://api.github.com/users/roelj/repos","events_url":"https://api.github.com/users/roelj/events{/privacy}","received_events_url":"https://api.github.com/users/roelj/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/Bioconductor/Contributions/labels/2.%20review%20in%20progress","name":"2. review in progress","color":"1881c2"},{"url":"https://api.github.com/repos/Bioconductor/Contributions/labels/ERROR","name":"ERROR","color":"bb3333"}],"state":"open","locked":false,"assignee":{"login":"vobencha","id":2466173,"avatar_url":"https://avatars.githubusercontent.com/u/2466173?v=3","gravatar_id":"","url":"https://api.github.com/users/vobencha","html_url":"https://github.com/vobencha","followers_url":"https://api.github.com/users/vobencha/followers","following_url":"https://api.github.com/users/vobencha/following{/other_user}","gists_url":"https://api.github.com/users/vobencha/gists{/gist_id}","starred_url":"https://api.github.com/users/vobencha/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vobencha/subscriptions","organizations_url":"https://api.github.com/users/vobencha/orgs","repos_url":"https://api.github.com/users/vobencha/repos","events_url":"https://api.github.com/users/vobencha/events{/privacy}","received_events_url":"https://api.github.com/users/vobencha/received_events","type":"User","site_admin":false},"assignees":[{"login":"vobencha","id":2466173,"avatar_url":"https://avatars.githubusercontent.com/u/2466173?v=3","gravatar_id":"","url":"https://api.github.com/users/vobencha","html_url":"https://github.com/vobencha","followers_url":"https://api.github.com/users/vobencha/followers","following_url":"https://api.github.com/users/vobencha/following{/other_user}","gists_url":"https://api.github.com/users/vobencha/gists{/gist_id}","starred_url":"https://api.github.com/users/vobencha/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/vobencha/subscriptions","organizations_url":"https://api.github.com/users/vobencha/orgs","repos_url":"https://api.github.com/users/vobencha/repos","events_url":"https://api.github.com/users/vobencha/events{/privacy}","received_events_url":"https://api.github.com/users/vobencha/received_events","type":"User","site_admin":false}],"milestone":null,"comments":10,"created_at":"2016-09-20T16:27:24Z","updated_at":"2016-09-22T15:27:21Z","closed_at":null,"body":"Update the following URL to point to the GitHub repository of\r\nthe package you wish to submit to _Bioconductor_\r\n\r\n- Repository: https://github.com/CuppenResearch/MutationalPatterns\r\n\r\nConfirm the following by editing each check box to '[x]'\r\n\r\n- [x] I understand that by submitting my package to _Bioconductor_,\r\n  the package source and all review commentary are visible to the\r\n  general public.\r\n\r\n- [x] I have read the _Bioconductor_ [Package Submission][2]\r\n  instructions. My package is consistent with the _Bioconductor_\r\n  [Package Guidelines][1].\r\n\r\n- [x] My package addresses statistical or bioinformatic issues related\r\n  to the analysis and comprehension of high throughput genomic data.\r\n\r\n- [x] I am committed to the long-term maintenance of my package. This\r\n  includes monitoring the [support site][3] for issues that users may\r\n  have, subscribing to the [bioc-devel][4] mailing list to stay aware\r\n  of developments in the _Bioconductor_ community, responding promptly\r\n  to requests for updates from the Core team in response to changes in\r\n  _R_ or underlying software.\r\n\r\nI am familiar with the essential aspects of _Bioconductor_ software\r\nmanagement, including:\r\n\r\n- [x] The 'devel' branch for new packages and features.\r\n- [x] The stable 'release' branch, made available every six\r\n      months, for bug fixes.\r\n- [x] _Bioconductor_ version control using [Subversion][5]\r\n  (optionally [via GitHub][6]).\r\n\r\nFor help with submitting your package, please subscribe and post questions\r\nto the [bioc-devel][4] mailing list.\r\n\r\n[1]: https://bioconductor.org/developers/package-guidelines/\r\n[2]: https://bioconductor.org/developers/package-submission/\r\n[3]: https://support.bioconductor.org\r\n[4]: https://stat.ethz.ch/mailman/listinfo/bioc-devel\r\n[5]: http://bioconductor.org/developers/how-to/source-control/\r\n[6]: http://bioconductor.org/developers/how-to/git-mirrors/\r\n"},"comment":{"url":"https://api.github.com/repos/Bioconductor/Contributions/issues/comments/248937412","html_url":"https://github.com/Bioconductor/Contributions/issues/122#issuecomment-248937412","issue_url":"https://api.github.com/repos/Bioconductor/Contributions/issues/122","id":248937412,"user":{"login":"bioc-issue-bot","id":17282096,"avatar_url":"https://avatars.githubusercontent.com/u/17282096?v=3","gravatar_id":"","url":"https://api.github.com/users/bioc-issue-bot","html_url":"https://github.com/bioc-issue-bot","followers_url":"https://api.github.com/users/bioc-issue-bot/followers","following_url":"https://api.github.com/users/bioc-issue-bot/following{/other_user}","gists_url":"https://api.github.com/users/bioc-issue-bot/gists{/gist_id}","starred_url":"https://api.github.com/users/bioc-issue-bot/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/bioc-issue-bot/subscriptions","organizations_url":"https://api.github.com/users/bioc-issue-bot/orgs","repos_url":"https://api.github.com/users/bioc-issue-bot/repos","events_url":"https://api.github.com/users/bioc-issue-bot/events{/privacy}","received_events_url":"https://api.github.com/users/bioc-issue-bot/received_events","type":"User","site_admin":false},"created_at":"2016-09-22T15:27:21Z","updated_at":"2016-09-22T15:27:21Z","body":"Received a valid push; starting a build. Commits are:\n\n[ae28fe3](https://github.com/CuppenResearch/MutationalPatterns/commit/ae28fe3f4da5f7dc2a9c4149cb05916638cb566a) remove reference genome from function, is redundan...\n[defbb8e](https://github.com/CuppenResearch/MutationalPatterns/commit/defbb8e5b0f934458113b5ca7186fcdd98269a35) Merge branch 'master' into bioconductor\n[994a851](https://github.com/CuppenResearch/MutationalPatterns/commit/994a851e09ed67a9340dae5dc6bc75f1804b8e50) Rewritten 'read_vcf' to 'vcf_to_granges'.\n[8f34ec0](https://github.com/CuppenResearch/MutationalPatterns/commit/8f34ec06a5ee02aa86123e69188fba8ab28e5cbe) Removed 'rename_chrom'.\n[815760f](https://github.com/CuppenResearch/MutationalPatterns/commit/815760ff834fb74c4b97dd22be5b392578ff314b) Use the proper file extension for RDS data.\n[28d8f6f](https://github.com/CuppenResearch/MutationalPatterns/commit/28d8f6f70f52c940790ac66bbc274e8b75c50f0a) Use the renamed 'vcf_to_granges_output.rds' file i...\n[dc72f77](https://github.com/CuppenResearch/MutationalPatterns/commit/dc72f7730d3d097a26839568ea5c847207080dde) Removed 'estimate_rank'.\n[a9a6ea9](https://github.com/CuppenResearch/MutationalPatterns/commit/a9a6ea94d8720b10ab066312286e8f005d3f03bd) Update 'genomic_distribution' examples, and apply ...\n[c86b732](https://github.com/CuppenResearch/MutationalPatterns/commit/c86b732705e065f8f9ebc8bd370b83ef2661aadc) Adhere to the 4-spaces indentation rules of Biocon...\n[8c3655e](https://github.com/CuppenResearch/MutationalPatterns/commit/8c3655e5435437d4099051f2e947bc9c95fc5dc9) Fix the examples after removing 'ref_genome'.\n[9315c4d](https://github.com/CuppenResearch/MutationalPatterns/commit/9315c4dfce90a513ea371c4c30bf75dc9531f9ac) Bugfix for Issue #5: error when not all types pres...\n[2653210](https://github.com/CuppenResearch/MutationalPatterns/commit/2653210bc976a26629f6d665958344cdaa62e303) Bump release.\n"}}
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