{"action":"created","issue":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/2246","repository_url":"https://api.github.com/repos/CellProfiler/CellProfiler","labels_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/2246/labels{/name}","comments_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/2246/comments","events_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/2246/events","html_url":"https://github.com/CellProfiler/CellProfiler/issues/2246","id":172443165,"number":2246,"title":"Enable multi-stack images to be reduced to one within a pipeline","user":{"login":"AnneCarpenter","id":1213811,"avatar_url":"https://avatars.githubusercontent.com/u/1213811?v=3","gravatar_id":"","url":"https://api.github.com/users/AnneCarpenter","html_url":"https://github.com/AnneCarpenter","followers_url":"https://api.github.com/users/AnneCarpenter/followers","following_url":"https://api.github.com/users/AnneCarpenter/following{/other_user}","gists_url":"https://api.github.com/users/AnneCarpenter/gists{/gist_id}","starred_url":"https://api.github.com/users/AnneCarpenter/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/AnneCarpenter/subscriptions","organizations_url":"https://api.github.com/users/AnneCarpenter/orgs","repos_url":"https://api.github.com/users/AnneCarpenter/repos","events_url":"https://api.github.com/users/AnneCarpenter/events{/privacy}","received_events_url":"https://api.github.com/users/AnneCarpenter/received_events","type":"User","site_admin":false},"labels":[{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/labels/Discussion","name":"Discussion","color":"5319e7"}],"state":"open","locked":false,"assignee":null,"assignees":[],"milestone":null,"comments":1,"created_at":"2016-08-22T12:45:03Z","updated_at":"2016-08-22T14:20:18Z","closed_at":null,"body":"See related forum post here:\r\nhttp://forum.cellprofiler.org/t/retrieving-best-focused-slice/3858\r\n\r\nI believe this is a common type of limitation. And if we are soon able to handle 3D images as a single unit passing through CellProfiler (rather than a set of slices as has been the case in the past) then it is at least a possibility that this kind of situation (user's part (1)) could be handled more gracefully.\r\n\r\nHow exactly to do this requires some discussion; is the solution a very generic module that selects a particular slice from a multi-stack entity (based on some prior measurement made by CP like focus metrics, or alternately first, middle, last) and passes the single slice along the pipeline? Or is it a modification of MakeProjection (which already turns a stack into a single image)? or MeasureImageQC (which makes focus measurements)? \r\n\r\n\r\n"},"comment":{"url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/comments/241427814","html_url":"https://github.com/CellProfiler/CellProfiler/issues/2246#issuecomment-241427814","issue_url":"https://api.github.com/repos/CellProfiler/CellProfiler/issues/2246","id":241427814,"user":{"login":"0x00B1","id":315821,"avatar_url":"https://avatars.githubusercontent.com/u/315821?v=3","gravatar_id":"","url":"https://api.github.com/users/0x00B1","html_url":"https://github.com/0x00B1","followers_url":"https://api.github.com/users/0x00B1/followers","following_url":"https://api.github.com/users/0x00B1/following{/other_user}","gists_url":"https://api.github.com/users/0x00B1/gists{/gist_id}","starred_url":"https://api.github.com/users/0x00B1/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/0x00B1/subscriptions","organizations_url":"https://api.github.com/users/0x00B1/orgs","repos_url":"https://api.github.com/users/0x00B1/repos","events_url":"https://api.github.com/users/0x00B1/events{/privacy}","received_events_url":"https://api.github.com/users/0x00B1/received_events","type":"User","site_admin":false},"created_at":"2016-08-22T14:20:18Z","updated_at":"2016-08-22T14:20:18Z","body":"@AnneCarpenter please copy the relevant information inside your message.\r\n"}}
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